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OpenMS
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This is the complete list of members for NucleicAcidSearchEngine, including all inherited members.
ambiguous_mods_ | NucleicAcidSearchEngine | protected |
calculateAndFilterFDR_(IdentificationData &id_data, bool only_top_hits) | NucleicAcidSearchEngine | inlineprotected |
calculatePrecursorMass_(double mz, Int charge, Int isotope, double adduct_mass, bool negative_mode) | NucleicAcidSearchEngine | inlineprotected |
ConstRibonucleotidePtr typedef | NucleicAcidSearchEngine | private |
deisotopeAndSingleChargeMSSpectrum_(MSSpectrum &in, Int min_charge, Int max_charge, double fragment_tolerance, bool fragment_unit_ppm, bool keep_only_deisotoped=false, Size min_isopeaks=3, Size max_isopeaks=10, bool make_single_charged=true) | NucleicAcidSearchEngine | inlineprotected |
fragment_ion_codes_ | NucleicAcidSearchEngine | protected |
generateLFQInput_(IdentificationData &id_data, const String &out_file) | NucleicAcidSearchEngine | inlineprotected |
getModifications_(const set< String > &mod_names) | NucleicAcidSearchEngine | inlineprotected |
HitsByScore typedef | NucleicAcidSearchEngine | protected |
main_(int, const char **) override | NucleicAcidSearchEngine | inlineprotected |
NucleicAcidSearchEngine() | NucleicAcidSearchEngine | inline |
parseAdduct_(const String &adduct) | NucleicAcidSearchEngine | inlineprotected |
postProcessHits_(const PeakMap &exp, vector< HitsByScore > &annotated_hits, IdentificationData &id_data, bool negative_mode) | NucleicAcidSearchEngine | inlineprotected |
preprocessSpectra_(PeakMap &exp, double fragment_mass_tolerance, bool fragment_mass_tolerance_unit_ppm, bool single_charge_spectra, bool negative_mode, Int min_charge, Int max_charge, bool include_unknown_charge) | NucleicAcidSearchEngine | inlineprotected |
registerOptionsAndFlags_() override | NucleicAcidSearchEngine | inlineprotected |
resolve_ambiguous_mods_ | NucleicAcidSearchEngine | protected |
resolveAmbiguousMods_(HitsByScore &hits) | NucleicAcidSearchEngine | inlineprotected |