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PepNovoAdapter

Identifies peptides in MS/MS spectra via PepNovo.

pot. predecessor tools → PepNovoAdapter → pot. successor tools
any signal-/preprocessing tool
(in mzML format)
IDFilter or
any protein/peptide processing tool

This wrapper application serves for getting peptide identifications for MS/MS spectra.

The whole process of identification via PepNovo is executed. Input file is one mzML file containing the MS/MS spectra for which the identifications are to be found. The results are written as an idXML output file.

The resulting idXML file can then be directly mapped to the spectra using the IDMapper class.

Consult your PepNovo reference manual for further details about parameter meanings.

Note
Currently mzIdentML (mzid) is not directly supported as an input/output format of this tool. Convert mzid files to/from idXML using IDFileConverter if necessary.

The command line parameters of this tool are:

INI file documentation of this tool: