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OpenMS
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Converter to input for Triqler.
This util consumes an ID-mapped consensusXML file and OpenMS experimental design in TSV format to create a CSV file which can subsequently be used as input for the python tool Triqler [1].
[1] The, M. & Käll, L. (2019). Integrated identification and quantification error probabilities for shotgun proteomics. Molecular & Cellular Proteomics, 18 (3), 561-570.
The command line parameters of this tool are:
INI file documentation of this tool: