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LuciphorAdapter

Adapter for the LuciPHOr2: a site localisation tool of generic post-translational modifications from tandem mass spectrometry data.

pot. predecessor tools → LuciphorAdapter → pot. successor tools
IDFileConverter IDFilter or
any protein/peptide processing tool

LuciPHOr2 must be installed before this wrapper can be used. Please make sure that Java and LuciPHOr2 are working.
The following LuciPHOr2 version is required: luciphor2 (JAVA-based version of Luciphor) (1.2014Oct10). At the time of writing, it could be downloaded from http://luciphor2.sourceforge.net.

Input spectra for LuciPHOr2 have to be in pepXML file format. The input mzML file must be the same as the one used to create the pepXML input file.

The command line parameters of this tool are:

INI file documentation of this tool: