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OpenMS
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Performs a peptide/protein identification with the CompNovo engine.
pot. predecessor tools | → CompNovoCID → | pot. successor tools |
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any signal-/preprocessing tool (in mzML format) | IDFilter or any protein/peptide processing tool |
All spectra are assumed to be CID spectra only.
The details are described in the publication:
Andreas Bertsch, Andreas Leinenbach, Anton Pervukhin, Markus Lubeck, Ralf Hartmer, Carsten Baessmann, Yasser A Elnakady, Rolf Müller, Sebastian Böcker, Christian G Huber and Oliver Kohlbacher (2009) "De novo peptide sequencing by tandem MS using complementary CID and electron transfer dissociation" Electrophoresis, 30(21):3736-3747. (PubMed ID: 19862751)
The command line parameters of this tool are:
INI file documentation of this tool: