OpenMS
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IDConflictResolver

Resolves ambiguous annotations of features with peptide identifications.

potential predecessor tools → IDConflictResolver → potential successor tools
IDMapper TextExporter
FeatureLinkerUnlabeled
(or another feature grouping algorithm)
ProteinQuantifier

The peptide identifications are filtered so that only one identification with a single hit (with the best score) is associated to each feature. (If two IDs have the same best score, either one of them may be selected.)

The the filtered identifications are added to the vector of unassigned peptides and also reduced to a single best hit.

This step may be useful before applying ProteinQuantifier, because features with ambiguous annotation are not considered for the quantification.

The command line parameters of this tool are:

INI file documentation of this tool: