![]() |
OpenMS
|
Performs a peptide/protein identification with the CompNovo engine.
pot. predecessor tools | → CompNovo → | pot. successor tools |
---|---|---|
any signal-/preprocessing tool (in mzML format) | IDFilter or any protein/peptide processing tool |
The CompNovo engine can operate in CID/ETD mode where the ETD spectra of the same precursor are used to support the de novo identification. In CID mode all spectra are assumed to be CID spectra only.
The details are described in the publication:
Andreas Bertsch, Andreas Leinenbach, Anton Pervukhin, Markus Lubeck, Ralf Hartmer, Carsten Baessmann, Yasser A Elnakady, Rolf Müller, Sebastian Böcker, Christian G Huber and Oliver Kohlbacher (2009) "De novo peptide sequencing by tandem MS using complementary CID and electron transfer dissociation" Electrophoresis, 30(21):3736-3747. (PubMed ID: 19862751)
The command line parameters of this tool are:
INI file documentation of this tool: