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OpenMS
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Executes a peak-picking and scoring algorithm on MRM/SRM data.
potential predecessor tools | → OpenSwathAnalyzer → | potential successor tools |
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OpenSwathChromatogramExtractor | OpenSwathFeatureXMLToTSV | |
MRMMapper | OpenSwathConfidenceScoring |
The idea of the OpenSwath Analyzer is to analyze a series of chromatograms together with the associated meta information (stored in TraML format) in order to determine likely places of elution of a peptide in targeted proteomics data (derived from SWATH-MS or MRM/SRM). This tool will perform peak picking on the chromatograms and scoring in a single tool, if you only want the peak picking look at UTILS_MRMTransitionGroupPicker tool.
The command line parameters of this tool are:
INI file documentation of this tool: