OpenMS
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FeatureFinderMRM

The feature detection application for quantitation.

pot. predecessor tools → FeatureFinderMRM → pot. successor tools
FeatureLinkerUnlabeled
(or another feature grouping tool)
MapAlignerPoseClustering
(or another alignment tool)

This module identifies "features" in a LC/MS map. By feature, we understand a peptide in a MS sample that reveals a characteristic isotope distribution. The algorithm computes positions in rt and m/z dimension and a charge estimate of each peptide.

How to find suitable parameters and details of the different algorithms implemented are described in the TOPP tutorial.

Specialized tools are available for some experimental techniques: IsobaricAnalyzer.

The command line parameters of this tool are:

INI file documentation of this tool:

For the parameters of the algorithm section see the algorithms documentation:
OpenMS::FeatureFinderAlgorithmMRM FeatureFinderAlgorithmMRM