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OpenMS
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PSMFeatureExtractor computes extra features for each input PSM.
pot. predecessor tools | → PSMFeatureExtractor → | pot. successor tools |
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PeptideIndexer | PercolatorAdapter |
PSMFeatureExtractor is search engine sensitive, i.e. it's extra features vary, depending on the search engine. Thus, please make sure the input is compliant with TOPP SearchengineAdapter output. Also, PeptideIndexer compliant target/decoy annotation is mandatory. Currently supported search engines are Comet, X!Tandem, MSGF+. Mascot support is available but in beta development.
The command line parameters of this tool are:
INI file documentation of this tool: