Mock Version: 5.0 Mock Version: 5.0 Mock Version: 5.0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target noarch --nodeps /builddir/build/SPECS/python-pynwb.spec'], chrootPath='/var/lib/mock/f40-build-2079529-49659/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=864000uid=996gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target noarch --nodeps /builddir/build/SPECS/python-pynwb.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: noarch Building for target noarch setting SOURCE_DATE_EPOCH=1703030400 Wrote: /builddir/build/SRPMS/python-pynwb-2.5.0-1.fc40.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target noarch --nodeps /builddir/build/SPECS/python-pynwb.spec'], chrootPath='/var/lib/mock/f40-build-2079529-49659/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=864000uid=996gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueraiseExc=FalseprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target noarch --nodeps /builddir/build/SPECS/python-pynwb.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: noarch Building for target noarch setting SOURCE_DATE_EPOCH=1702944000 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.J1197Y + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf pynwb-2.5.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pynwb-2.5.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd pynwb-2.5.0 + rm -rf /builddir/build/BUILD/pynwb-2.5.0-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/pynwb-2.5.0-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-Fix-warnings-from-tests-1778.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + sed -r -i 's@"coverage", "run", "-p"@"/usr/bin/python3"@' tests/validation/test_validate.py + sed -r -i 's/==.*//' requirements.txt + tee requirements-unpinned.txt + sed -r -i '1{s/^/from unittest import skip\n/}' tests/validation/test_validate.py + for n in test_validate_file_cached test_validate_file_cached_extension test_validate_file_cached_extension_pass_ns test_validate_file_cached_ignore test_validate_file_list_namespaces_core test_validate_file_list_namespaces_extension + sed -r -i 's/^([[:blank:]]*)(def test_validate_file_cached\()/\1@skip('\''Re-import issues'\'')\n\1\2/' tests/validation/test_validate.py + for n in test_validate_file_cached test_validate_file_cached_extension test_validate_file_cached_extension_pass_ns test_validate_file_cached_ignore test_validate_file_list_namespaces_core test_validate_file_list_namespaces_extension + sed -r -i 's/^([[:blank:]]*)(def test_validate_file_cached_extension\()/\1@skip('\''Re-import issues'\'')\n\1\2/' tests/validation/test_validate.py + for n in test_validate_file_cached test_validate_file_cached_extension test_validate_file_cached_extension_pass_ns test_validate_file_cached_ignore test_validate_file_list_namespaces_core test_validate_file_list_namespaces_extension + sed -r -i 's/^([[:blank:]]*)(def test_validate_file_cached_extension_pass_ns\()/\1@skip('\''Re-import issues'\'')\n\1\2/' tests/validation/test_validate.py + for n in test_validate_file_cached test_validate_file_cached_extension test_validate_file_cached_extension_pass_ns test_validate_file_cached_ignore test_validate_file_list_namespaces_core test_validate_file_list_namespaces_extension + sed -r -i 's/^([[:blank:]]*)(def test_validate_file_cached_ignore\()/\1@skip('\''Re-import issues'\'')\n\1\2/' tests/validation/test_validate.py + for n in test_validate_file_cached test_validate_file_cached_extension test_validate_file_cached_extension_pass_ns test_validate_file_cached_ignore test_validate_file_list_namespaces_core test_validate_file_list_namespaces_extension + sed -r -i 's/^([[:blank:]]*)(def test_validate_file_list_namespaces_core\()/\1@skip('\''Re-import issues'\'')\n\1\2/' tests/validation/test_validate.py + for n in test_validate_file_cached test_validate_file_cached_extension test_validate_file_cached_extension_pass_ns test_validate_file_cached_ignore test_validate_file_list_namespaces_core test_validate_file_list_namespaces_extension + sed -r -i 's/^([[:blank:]]*)(def test_validate_file_list_namespaces_extension\()/\1@skip('\''Re-import issues'\'')\n\1\2/' tests/validation/test_validate.py + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.booQxp + umask 022 + cd /builddir/build/BUILD + cd pynwb-2.5.0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/pynwb-2.5.0/pyproject-wheeldir --output /builddir/build/BUILD/python-pynwb-2.5.0-1.fc40.noarch-pyproject-buildrequires requirements-unpinned.txt Handling setuptools >= 40.8 from default build backend Requirement not satisfied: setuptools >= 40.8 Handling wheel from default build backend Requirement not satisfied: wheel Exiting dependency generation pass: build backend + cat /builddir/build/BUILD/python-pynwb-2.5.0-1.fc40.noarch-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-pynwb-2.5.0-1.fc40.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target noarch --nodeps /builddir/build/SPECS/python-pynwb.spec'], chrootPath='/var/lib/mock/f40-build-2079529-49659/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=864000uid=996gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueraiseExc=FalseprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target noarch --nodeps /builddir/build/SPECS/python-pynwb.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: noarch Building for target noarch setting SOURCE_DATE_EPOCH=1702944000 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.p5kkwS + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf pynwb-2.5.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pynwb-2.5.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd pynwb-2.5.0 + rm -rf /builddir/build/BUILD/pynwb-2.5.0-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/pynwb-2.5.0-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-Fix-warnings-from-tests-1778.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + sed -r -i 's@"coverage", "run", "-p"@"/usr/bin/python3"@' tests/validation/test_validate.py + sed -r -i 's/==.*//' requirements.txt + tee requirements-unpinned.txt + sed -r -i '1{s/^/from unittest import skip\n/}' tests/validation/test_validate.py + for n in test_validate_file_cached test_validate_file_cached_extension test_validate_file_cached_extension_pass_ns test_validate_file_cached_ignore test_validate_file_list_namespaces_core test_validate_file_list_namespaces_extension + sed -r -i 's/^([[:blank:]]*)(def test_validate_file_cached\()/\1@skip('\''Re-import issues'\'')\n\1\2/' tests/validation/test_validate.py + for n in test_validate_file_cached test_validate_file_cached_extension test_validate_file_cached_extension_pass_ns test_validate_file_cached_ignore test_validate_file_list_namespaces_core test_validate_file_list_namespaces_extension + sed -r -i 's/^([[:blank:]]*)(def test_validate_file_cached_extension\()/\1@skip('\''Re-import issues'\'')\n\1\2/' tests/validation/test_validate.py + for n in test_validate_file_cached test_validate_file_cached_extension test_validate_file_cached_extension_pass_ns test_validate_file_cached_ignore test_validate_file_list_namespaces_core test_validate_file_list_namespaces_extension + sed -r -i 's/^([[:blank:]]*)(def test_validate_file_cached_extension_pass_ns\()/\1@skip('\''Re-import issues'\'')\n\1\2/' tests/validation/test_validate.py + for n in test_validate_file_cached test_validate_file_cached_extension test_validate_file_cached_extension_pass_ns test_validate_file_cached_ignore test_validate_file_list_namespaces_core test_validate_file_list_namespaces_extension + sed -r -i 's/^([[:blank:]]*)(def test_validate_file_cached_ignore\()/\1@skip('\''Re-import issues'\'')\n\1\2/' tests/validation/test_validate.py + for n in test_validate_file_cached test_validate_file_cached_extension test_validate_file_cached_extension_pass_ns test_validate_file_cached_ignore test_validate_file_list_namespaces_core test_validate_file_list_namespaces_extension + sed -r -i 's/^([[:blank:]]*)(def test_validate_file_list_namespaces_core\()/\1@skip('\''Re-import issues'\'')\n\1\2/' tests/validation/test_validate.py + for n in test_validate_file_cached test_validate_file_cached_extension test_validate_file_cached_extension_pass_ns test_validate_file_cached_ignore test_validate_file_list_namespaces_core test_validate_file_list_namespaces_extension + sed -r -i 's/^([[:blank:]]*)(def test_validate_file_list_namespaces_extension\()/\1@skip('\''Re-import issues'\'')\n\1\2/' tests/validation/test_validate.py + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.oZBhTZ + umask 022 + cd /builddir/build/BUILD + cd pynwb-2.5.0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/pynwb-2.5.0/pyproject-wheeldir --output /builddir/build/BUILD/python-pynwb-2.5.0-1.fc40.noarch-pyproject-buildrequires requirements-unpinned.txt Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 68.2.2) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.41.2) found these packages: ['pynwb', 'pynwb.io', 'pynwb.testing', 'pynwb.legacy', 'pynwb.testing.mock', 'pynwb.legacy.io'] ['h5py>=2.10', 'hdmf>=3.9.0', 'numpy>=1.16', 'pandas>=1.1.5', 'python-dateutil>=2.7.3', 'setuptools'] running egg_info writing src/pynwb.egg-info/PKG-INFO writing dependency_links to src/pynwb.egg-info/dependency_links.txt writing requirements to src/pynwb.egg-info/requires.txt writing top-level names to src/pynwb.egg-info/top_level.txt reading manifest file 'src/pynwb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'src/pynwb.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.41.2) found these packages: ['pynwb', 'pynwb.io', 'pynwb.testing', 'pynwb.legacy', 'pynwb.testing.mock', 'pynwb.legacy.io'] ['h5py>=2.10', 'hdmf>=3.9.0', 'numpy>=1.16', 'pandas>=1.1.5', 'python-dateutil>=2.7.3', 'setuptools'] running dist_info creating pynwb.egg-info writing pynwb.egg-info/PKG-INFO writing dependency_links to pynwb.egg-info/dependency_links.txt writing requirements to pynwb.egg-info/requires.txt writing top-level names to pynwb.egg-info/top_level.txt writing manifest file 'pynwb.egg-info/SOURCES.txt' reading manifest file 'pynwb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pynwb.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/pynwb-2.5.0/pynwb-2.5.0.dist-info' Handling h5py >=2.10 from hook generated metadata: Requires-Dist (pynwb) Requirement not satisfied: h5py >=2.10 Handling hdmf >=3.9.0 from hook generated metadata: Requires-Dist (pynwb) Requirement not satisfied: hdmf >=3.9.0 Handling numpy >=1.16 from hook generated metadata: Requires-Dist (pynwb) Requirement not satisfied: numpy >=1.16 Handling pandas >=1.1.5 from hook generated metadata: Requires-Dist (pynwb) Requirement not satisfied: pandas >=1.1.5 Handling python-dateutil >=2.7.3 from hook generated metadata: Requires-Dist (pynwb) Requirement not satisfied: python-dateutil >=2.7.3 Handling setuptools from hook generated metadata: Requires-Dist (pynwb) Requirement satisfied: setuptools (installed: setuptools 68.2.2) + cat /builddir/build/BUILD/python-pynwb-2.5.0-1.fc40.noarch-pyproject-buildrequires + rm -rfv pynwb-2.5.0.dist-info/ removed 'pynwb-2.5.0.dist-info/METADATA' removed 'pynwb-2.5.0.dist-info/top_level.txt' removed directory 'pynwb-2.5.0.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-pynwb-2.5.0-1.fc40.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target noarch --nodeps /builddir/build/SPECS/python-pynwb.spec'], chrootPath='/var/lib/mock/f40-build-2079529-49659/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=864000uid=996gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueraiseExc=FalseprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target noarch --nodeps /builddir/build/SPECS/python-pynwb.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: noarch Building for target noarch setting SOURCE_DATE_EPOCH=1702944000 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.UBnyiD + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf pynwb-2.5.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pynwb-2.5.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd pynwb-2.5.0 + rm -rf /builddir/build/BUILD/pynwb-2.5.0-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/pynwb-2.5.0-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-Fix-warnings-from-tests-1778.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + sed -r -i 's@"coverage", "run", "-p"@"/usr/bin/python3"@' tests/validation/test_validate.py + sed -r -i 's/==.*//' requirements.txt + tee requirements-unpinned.txt + sed -r -i '1{s/^/from unittest import skip\n/}' tests/validation/test_validate.py + for n in test_validate_file_cached test_validate_file_cached_extension test_validate_file_cached_extension_pass_ns test_validate_file_cached_ignore test_validate_file_list_namespaces_core test_validate_file_list_namespaces_extension + sed -r -i 's/^([[:blank:]]*)(def test_validate_file_cached\()/\1@skip('\''Re-import issues'\'')\n\1\2/' tests/validation/test_validate.py + for n in test_validate_file_cached test_validate_file_cached_extension test_validate_file_cached_extension_pass_ns test_validate_file_cached_ignore test_validate_file_list_namespaces_core test_validate_file_list_namespaces_extension + sed -r -i 's/^([[:blank:]]*)(def test_validate_file_cached_extension\()/\1@skip('\''Re-import issues'\'')\n\1\2/' tests/validation/test_validate.py + for n in test_validate_file_cached test_validate_file_cached_extension test_validate_file_cached_extension_pass_ns test_validate_file_cached_ignore test_validate_file_list_namespaces_core test_validate_file_list_namespaces_extension + sed -r -i 's/^([[:blank:]]*)(def test_validate_file_cached_extension_pass_ns\()/\1@skip('\''Re-import issues'\'')\n\1\2/' tests/validation/test_validate.py + for n in test_validate_file_cached test_validate_file_cached_extension test_validate_file_cached_extension_pass_ns test_validate_file_cached_ignore test_validate_file_list_namespaces_core test_validate_file_list_namespaces_extension + sed -r -i 's/^([[:blank:]]*)(def test_validate_file_cached_ignore\()/\1@skip('\''Re-import issues'\'')\n\1\2/' tests/validation/test_validate.py + for n in test_validate_file_cached test_validate_file_cached_extension test_validate_file_cached_extension_pass_ns test_validate_file_cached_ignore test_validate_file_list_namespaces_core test_validate_file_list_namespaces_extension + sed -r -i 's/^([[:blank:]]*)(def test_validate_file_list_namespaces_core\()/\1@skip('\''Re-import issues'\'')\n\1\2/' tests/validation/test_validate.py + for n in test_validate_file_cached test_validate_file_cached_extension test_validate_file_cached_extension_pass_ns test_validate_file_cached_ignore test_validate_file_list_namespaces_core test_validate_file_list_namespaces_extension + sed -r -i 's/^([[:blank:]]*)(def test_validate_file_list_namespaces_extension\()/\1@skip('\''Re-import issues'\'')\n\1\2/' tests/validation/test_validate.py + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.cYHXs8 + umask 022 + cd /builddir/build/BUILD + cd pynwb-2.5.0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/pynwb-2.5.0/pyproject-wheeldir --output /builddir/build/BUILD/python-pynwb-2.5.0-1.fc40.noarch-pyproject-buildrequires requirements-unpinned.txt Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 68.2.2) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.41.2) found these packages: ['pynwb', 'pynwb.io', 'pynwb.testing', 'pynwb.legacy', 'pynwb.testing.mock', 'pynwb.legacy.io'] ['h5py>=2.10', 'hdmf>=3.9.0', 'numpy>=1.16', 'pandas>=1.1.5', 'python-dateutil>=2.7.3', 'setuptools'] running egg_info writing src/pynwb.egg-info/PKG-INFO writing dependency_links to src/pynwb.egg-info/dependency_links.txt writing requirements to src/pynwb.egg-info/requires.txt writing top-level names to src/pynwb.egg-info/top_level.txt reading manifest file 'src/pynwb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'src/pynwb.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.41.2) found these packages: ['pynwb', 'pynwb.io', 'pynwb.testing', 'pynwb.legacy', 'pynwb.testing.mock', 'pynwb.legacy.io'] ['h5py>=2.10', 'hdmf>=3.9.0', 'numpy>=1.16', 'pandas>=1.1.5', 'python-dateutil>=2.7.3', 'setuptools'] running dist_info creating pynwb.egg-info writing pynwb.egg-info/PKG-INFO writing dependency_links to pynwb.egg-info/dependency_links.txt writing requirements to pynwb.egg-info/requires.txt writing top-level names to pynwb.egg-info/top_level.txt writing manifest file 'pynwb.egg-info/SOURCES.txt' reading manifest file 'pynwb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pynwb.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/pynwb-2.5.0/pynwb-2.5.0.dist-info' Handling h5py >=2.10 from hook generated metadata: Requires-Dist (pynwb) Requirement satisfied: h5py >=2.10 (installed: h5py 3.10.0) Handling hdmf >=3.9.0 from hook generated metadata: Requires-Dist (pynwb) Requirement satisfied: hdmf >=3.9.0 (installed: hdmf 3.11.0) Handling numpy >=1.16 from hook generated metadata: Requires-Dist (pynwb) Requirement satisfied: numpy >=1.16 (installed: numpy 1.26.0) Handling pandas >=1.1.5 from hook generated metadata: Requires-Dist (pynwb) Requirement satisfied: pandas >=1.1.5 (installed: pandas 1.5.3) Handling python-dateutil >=2.7.3 from hook generated metadata: Requires-Dist (pynwb) Requirement satisfied: python-dateutil >=2.7.3 (installed: python-dateutil 2.8.2) Handling setuptools from hook generated metadata: Requires-Dist (pynwb) Requirement satisfied: setuptools (installed: setuptools 68.2.2) + cat /builddir/build/BUILD/python-pynwb-2.5.0-1.fc40.noarch-pyproject-buildrequires + rm -rfv pynwb-2.5.0.dist-info/ removed 'pynwb-2.5.0.dist-info/METADATA' removed 'pynwb-2.5.0.dist-info/top_level.txt' removed directory 'pynwb-2.5.0.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-pynwb-2.5.0-1.fc40.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --noclean --target noarch --nodeps /builddir/build/SPECS/python-pynwb.spec'], chrootPath='/var/lib/mock/f40-build-2079529-49659/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=864000uid=996gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --noclean --target noarch --nodeps /builddir/build/SPECS/python-pynwb.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: noarch Building for target noarch setting SOURCE_DATE_EPOCH=1702944000 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.LvtXC8 + umask 022 + cd /builddir/build/BUILD + cd pynwb-2.5.0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/pynwb-2.5.0/pyproject-wheeldir --output /builddir/build/BUILD/python-pynwb-2.5.0-1.fc40.noarch-pyproject-buildrequires requirements-unpinned.txt Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 68.2.2) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.41.2) found these packages: ['pynwb', 'pynwb.io', 'pynwb.testing', 'pynwb.legacy', 'pynwb.testing.mock', 'pynwb.legacy.io'] ['h5py>=2.10', 'hdmf>=3.9.0', 'numpy>=1.16', 'pandas>=1.1.5', 'python-dateutil>=2.7.3', 'setuptools'] running egg_info writing src/pynwb.egg-info/PKG-INFO writing dependency_links to src/pynwb.egg-info/dependency_links.txt writing requirements to src/pynwb.egg-info/requires.txt writing top-level names to src/pynwb.egg-info/top_level.txt reading manifest file 'src/pynwb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'src/pynwb.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.41.2) found these packages: ['pynwb', 'pynwb.io', 'pynwb.testing', 'pynwb.legacy', 'pynwb.testing.mock', 'pynwb.legacy.io'] ['h5py>=2.10', 'hdmf>=3.9.0', 'numpy>=1.16', 'pandas>=1.1.5', 'python-dateutil>=2.7.3', 'setuptools'] running dist_info writing pynwb.egg-info/PKG-INFO writing dependency_links to pynwb.egg-info/dependency_links.txt writing requirements to pynwb.egg-info/requires.txt writing top-level names to pynwb.egg-info/top_level.txt reading manifest file 'pynwb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pynwb.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/pynwb-2.5.0/pynwb-2.5.0.dist-info' Handling h5py >=2.10 from hook generated metadata: Requires-Dist (pynwb) Requirement satisfied: h5py >=2.10 (installed: h5py 3.10.0) Handling hdmf >=3.9.0 from hook generated metadata: Requires-Dist (pynwb) Requirement satisfied: hdmf >=3.9.0 (installed: hdmf 3.11.0) Handling numpy >=1.16 from hook generated metadata: Requires-Dist (pynwb) Requirement satisfied: numpy >=1.16 (installed: numpy 1.26.0) Handling pandas >=1.1.5 from hook generated metadata: Requires-Dist (pynwb) Requirement satisfied: pandas >=1.1.5 (installed: pandas 1.5.3) Handling python-dateutil >=2.7.3 from hook generated metadata: Requires-Dist (pynwb) Requirement satisfied: python-dateutil >=2.7.3 (installed: python-dateutil 2.8.2) Handling setuptools from hook generated metadata: Requires-Dist (pynwb) Requirement satisfied: setuptools (installed: setuptools 68.2.2) + cat /builddir/build/BUILD/python-pynwb-2.5.0-1.fc40.noarch-pyproject-buildrequires + rm -rfv pynwb-2.5.0.dist-info/ removed 'pynwb-2.5.0.dist-info/METADATA' removed 'pynwb-2.5.0.dist-info/top_level.txt' removed directory 'pynwb-2.5.0.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.lgfBya + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pynwb-2.5.0 + mkdir -p /builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/pynwb-2.5.0/pyproject-wheeldir Processing /builddir/build/BUILD/pynwb-2.5.0 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) found these packages: ['pynwb', 'pynwb.io', 'pynwb.testing', 'pynwb.legacy', 'pynwb.testing.mock', 'pynwb.legacy.io'] ['h5py>=2.10', 'hdmf>=3.9.0', 'numpy>=1.16', 'pandas>=1.1.5', 'python-dateutil>=2.7.3', 'setuptools'] running dist_info creating /builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir/pip-modern-metadata-olu7ebu3/pynwb.egg-info writing /builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir/pip-modern-metadata-olu7ebu3/pynwb.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir/pip-modern-metadata-olu7ebu3/pynwb.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir/pip-modern-metadata-olu7ebu3/pynwb.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir/pip-modern-metadata-olu7ebu3/pynwb.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir/pip-modern-metadata-olu7ebu3/pynwb.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir/pip-modern-metadata-olu7ebu3/pynwb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file '/builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir/pip-modern-metadata-olu7ebu3/pynwb.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir/pip-modern-metadata-olu7ebu3/pynwb-2.5.0.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: pynwb Building wheel for pynwb (pyproject.toml): started Running command Building wheel for pynwb (pyproject.toml) found these packages: ['pynwb', 'pynwb.io', 'pynwb.testing', 'pynwb.legacy', 'pynwb.testing.mock', 'pynwb.legacy.io'] ['h5py>=2.10', 'hdmf>=3.9.0', 'numpy>=1.16', 'pandas>=1.1.5', 'python-dateutil>=2.7.3', 'setuptools'] running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/pynwb copying src/pynwb/validate.py -> build/lib/pynwb copying src/pynwb/image.py -> build/lib/pynwb copying src/pynwb/base.py -> build/lib/pynwb copying src/pynwb/__init__.py -> build/lib/pynwb copying src/pynwb/resources.py -> build/lib/pynwb copying src/pynwb/ecephys.py -> build/lib/pynwb copying src/pynwb/icephys.py -> build/lib/pynwb copying src/pynwb/file.py -> build/lib/pynwb copying src/pynwb/core.py -> build/lib/pynwb copying src/pynwb/_due.py -> build/lib/pynwb copying src/pynwb/epoch.py -> build/lib/pynwb copying src/pynwb/_version.py -> build/lib/pynwb copying src/pynwb/device.py -> build/lib/pynwb copying src/pynwb/ogen.py -> build/lib/pynwb copying src/pynwb/ophys.py -> build/lib/pynwb copying src/pynwb/retinotopy.py -> build/lib/pynwb copying src/pynwb/behavior.py -> build/lib/pynwb copying src/pynwb/spec.py -> build/lib/pynwb copying src/pynwb/misc.py -> build/lib/pynwb creating build/lib/pynwb/io copying src/pynwb/io/image.py -> build/lib/pynwb/io copying src/pynwb/io/base.py -> build/lib/pynwb/io copying src/pynwb/io/__init__.py -> build/lib/pynwb/io copying src/pynwb/io/ecephys.py -> build/lib/pynwb/io copying src/pynwb/io/icephys.py -> build/lib/pynwb/io copying src/pynwb/io/file.py -> build/lib/pynwb/io copying src/pynwb/io/core.py -> build/lib/pynwb/io copying src/pynwb/io/utils.py -> build/lib/pynwb/io copying src/pynwb/io/epoch.py -> build/lib/pynwb/io copying src/pynwb/io/ogen.py -> build/lib/pynwb/io copying src/pynwb/io/ophys.py -> build/lib/pynwb/io copying src/pynwb/io/retinotopy.py -> build/lib/pynwb/io copying src/pynwb/io/behavior.py -> build/lib/pynwb/io copying src/pynwb/io/misc.py -> build/lib/pynwb/io creating build/lib/pynwb/testing copying src/pynwb/testing/make_test_files.py -> build/lib/pynwb/testing copying src/pynwb/testing/__init__.py -> build/lib/pynwb/testing copying src/pynwb/testing/icephys_testutils.py -> build/lib/pynwb/testing copying src/pynwb/testing/testh5io.py -> build/lib/pynwb/testing copying src/pynwb/testing/utils.py -> build/lib/pynwb/testing creating build/lib/pynwb/legacy copying src/pynwb/legacy/__init__.py -> build/lib/pynwb/legacy copying src/pynwb/legacy/map.py -> build/lib/pynwb/legacy creating build/lib/pynwb/testing/mock copying src/pynwb/testing/mock/base.py -> build/lib/pynwb/testing/mock copying src/pynwb/testing/mock/__init__.py -> build/lib/pynwb/testing/mock copying src/pynwb/testing/mock/ecephys.py -> build/lib/pynwb/testing/mock copying src/pynwb/testing/mock/icephys.py -> build/lib/pynwb/testing/mock copying src/pynwb/testing/mock/file.py -> build/lib/pynwb/testing/mock copying src/pynwb/testing/mock/utils.py -> build/lib/pynwb/testing/mock copying src/pynwb/testing/mock/device.py -> build/lib/pynwb/testing/mock copying src/pynwb/testing/mock/ogen.py -> build/lib/pynwb/testing/mock copying src/pynwb/testing/mock/ophys.py -> build/lib/pynwb/testing/mock copying src/pynwb/testing/mock/behavior.py -> build/lib/pynwb/testing/mock creating build/lib/pynwb/legacy/io copying src/pynwb/legacy/io/image.py -> build/lib/pynwb/legacy/io copying src/pynwb/legacy/io/base.py -> build/lib/pynwb/legacy/io copying src/pynwb/legacy/io/__init__.py -> build/lib/pynwb/legacy/io copying src/pynwb/legacy/io/ecephys.py -> build/lib/pynwb/legacy/io copying src/pynwb/legacy/io/icephys.py -> build/lib/pynwb/legacy/io copying src/pynwb/legacy/io/file.py -> build/lib/pynwb/legacy/io copying src/pynwb/legacy/io/epoch.py -> build/lib/pynwb/legacy/io copying src/pynwb/legacy/io/ogen.py -> build/lib/pynwb/legacy/io copying src/pynwb/legacy/io/ophys.py -> build/lib/pynwb/legacy/io copying src/pynwb/legacy/io/retinotopy.py -> build/lib/pynwb/legacy/io copying src/pynwb/legacy/io/behavior.py -> build/lib/pynwb/legacy/io copying src/pynwb/legacy/io/misc.py -> build/lib/pynwb/legacy/io creating build/lib/pynwb/nwb-schema creating build/lib/pynwb/nwb-schema/core copying src/pynwb/nwb-schema/core/nwb.ogen.yaml -> build/lib/pynwb/nwb-schema/core copying src/pynwb/nwb-schema/core/nwb.retinotopy.yaml -> build/lib/pynwb/nwb-schema/core copying src/pynwb/nwb-schema/core/nwb.device.yaml -> build/lib/pynwb/nwb-schema/core copying src/pynwb/nwb-schema/core/nwb.ophys.yaml -> build/lib/pynwb/nwb-schema/core copying src/pynwb/nwb-schema/core/nwb.icephys.yaml -> build/lib/pynwb/nwb-schema/core copying src/pynwb/nwb-schema/core/nwb.behavior.yaml -> build/lib/pynwb/nwb-schema/core copying src/pynwb/nwb-schema/core/nwb.file.yaml -> build/lib/pynwb/nwb-schema/core copying src/pynwb/nwb-schema/core/nwb.ecephys.yaml -> build/lib/pynwb/nwb-schema/core copying src/pynwb/nwb-schema/core/nwb.base.yaml -> build/lib/pynwb/nwb-schema/core copying src/pynwb/nwb-schema/core/nwb.misc.yaml -> build/lib/pynwb/nwb-schema/core copying src/pynwb/nwb-schema/core/nwb.namespace.yaml -> build/lib/pynwb/nwb-schema/core copying src/pynwb/nwb-schema/core/nwb.image.yaml -> build/lib/pynwb/nwb-schema/core copying src/pynwb/nwb-schema/core/nwb.epoch.yaml -> build/lib/pynwb/nwb-schema/core UPDATING build/lib/pynwb/_version.py set build/lib/pynwb/_version.py to '2.5.0' installing to build/bdist.linux-riscv64/wheel running install running install_lib creating build/bdist.linux-riscv64 creating build/bdist.linux-riscv64/wheel creating build/bdist.linux-riscv64/wheel/pynwb copying build/lib/pynwb/validate.py -> build/bdist.linux-riscv64/wheel/pynwb copying build/lib/pynwb/image.py -> build/bdist.linux-riscv64/wheel/pynwb copying build/lib/pynwb/base.py -> build/bdist.linux-riscv64/wheel/pynwb copying build/lib/pynwb/__init__.py -> build/bdist.linux-riscv64/wheel/pynwb copying build/lib/pynwb/resources.py -> build/bdist.linux-riscv64/wheel/pynwb copying build/lib/pynwb/ecephys.py -> build/bdist.linux-riscv64/wheel/pynwb copying build/lib/pynwb/icephys.py -> build/bdist.linux-riscv64/wheel/pynwb creating build/bdist.linux-riscv64/wheel/pynwb/io copying build/lib/pynwb/io/image.py -> build/bdist.linux-riscv64/wheel/pynwb/io copying build/lib/pynwb/io/base.py -> build/bdist.linux-riscv64/wheel/pynwb/io copying build/lib/pynwb/io/__init__.py -> build/bdist.linux-riscv64/wheel/pynwb/io copying build/lib/pynwb/io/ecephys.py -> build/bdist.linux-riscv64/wheel/pynwb/io copying build/lib/pynwb/io/icephys.py -> build/bdist.linux-riscv64/wheel/pynwb/io copying build/lib/pynwb/io/file.py -> build/bdist.linux-riscv64/wheel/pynwb/io copying build/lib/pynwb/io/core.py -> build/bdist.linux-riscv64/wheel/pynwb/io copying build/lib/pynwb/io/utils.py -> build/bdist.linux-riscv64/wheel/pynwb/io copying build/lib/pynwb/io/epoch.py -> build/bdist.linux-riscv64/wheel/pynwb/io copying build/lib/pynwb/io/ogen.py -> build/bdist.linux-riscv64/wheel/pynwb/io copying build/lib/pynwb/io/ophys.py -> build/bdist.linux-riscv64/wheel/pynwb/io copying build/lib/pynwb/io/retinotopy.py -> build/bdist.linux-riscv64/wheel/pynwb/io copying build/lib/pynwb/io/behavior.py -> build/bdist.linux-riscv64/wheel/pynwb/io copying build/lib/pynwb/io/misc.py -> build/bdist.linux-riscv64/wheel/pynwb/io creating build/bdist.linux-riscv64/wheel/pynwb/testing copying build/lib/pynwb/testing/make_test_files.py -> build/bdist.linux-riscv64/wheel/pynwb/testing copying build/lib/pynwb/testing/__init__.py -> build/bdist.linux-riscv64/wheel/pynwb/testing creating build/bdist.linux-riscv64/wheel/pynwb/testing/mock copying build/lib/pynwb/testing/mock/base.py -> build/bdist.linux-riscv64/wheel/pynwb/testing/mock copying build/lib/pynwb/testing/mock/__init__.py -> build/bdist.linux-riscv64/wheel/pynwb/testing/mock copying build/lib/pynwb/testing/mock/ecephys.py -> build/bdist.linux-riscv64/wheel/pynwb/testing/mock copying build/lib/pynwb/testing/mock/icephys.py -> build/bdist.linux-riscv64/wheel/pynwb/testing/mock copying build/lib/pynwb/testing/mock/file.py -> build/bdist.linux-riscv64/wheel/pynwb/testing/mock copying build/lib/pynwb/testing/mock/utils.py -> build/bdist.linux-riscv64/wheel/pynwb/testing/mock copying build/lib/pynwb/testing/mock/device.py -> build/bdist.linux-riscv64/wheel/pynwb/testing/mock copying build/lib/pynwb/testing/mock/ogen.py -> build/bdist.linux-riscv64/wheel/pynwb/testing/mock copying build/lib/pynwb/testing/mock/ophys.py -> build/bdist.linux-riscv64/wheel/pynwb/testing/mock copying build/lib/pynwb/testing/mock/behavior.py -> build/bdist.linux-riscv64/wheel/pynwb/testing/mock copying build/lib/pynwb/testing/icephys_testutils.py -> build/bdist.linux-riscv64/wheel/pynwb/testing copying build/lib/pynwb/testing/testh5io.py -> build/bdist.linux-riscv64/wheel/pynwb/testing copying build/lib/pynwb/testing/utils.py -> build/bdist.linux-riscv64/wheel/pynwb/testing copying build/lib/pynwb/file.py -> build/bdist.linux-riscv64/wheel/pynwb creating build/bdist.linux-riscv64/wheel/pynwb/legacy copying build/lib/pynwb/legacy/__init__.py -> build/bdist.linux-riscv64/wheel/pynwb/legacy creating build/bdist.linux-riscv64/wheel/pynwb/legacy/io copying build/lib/pynwb/legacy/io/image.py -> build/bdist.linux-riscv64/wheel/pynwb/legacy/io copying build/lib/pynwb/legacy/io/base.py -> build/bdist.linux-riscv64/wheel/pynwb/legacy/io copying build/lib/pynwb/legacy/io/__init__.py -> build/bdist.linux-riscv64/wheel/pynwb/legacy/io copying build/lib/pynwb/legacy/io/ecephys.py -> build/bdist.linux-riscv64/wheel/pynwb/legacy/io copying build/lib/pynwb/legacy/io/icephys.py -> build/bdist.linux-riscv64/wheel/pynwb/legacy/io copying build/lib/pynwb/legacy/io/file.py -> build/bdist.linux-riscv64/wheel/pynwb/legacy/io copying build/lib/pynwb/legacy/io/epoch.py -> build/bdist.linux-riscv64/wheel/pynwb/legacy/io copying build/lib/pynwb/legacy/io/ogen.py -> build/bdist.linux-riscv64/wheel/pynwb/legacy/io copying build/lib/pynwb/legacy/io/ophys.py -> build/bdist.linux-riscv64/wheel/pynwb/legacy/io copying build/lib/pynwb/legacy/io/retinotopy.py -> build/bdist.linux-riscv64/wheel/pynwb/legacy/io copying build/lib/pynwb/legacy/io/behavior.py -> build/bdist.linux-riscv64/wheel/pynwb/legacy/io copying build/lib/pynwb/legacy/io/misc.py -> build/bdist.linux-riscv64/wheel/pynwb/legacy/io copying build/lib/pynwb/legacy/map.py -> build/bdist.linux-riscv64/wheel/pynwb/legacy copying build/lib/pynwb/core.py -> build/bdist.linux-riscv64/wheel/pynwb copying build/lib/pynwb/_due.py -> build/bdist.linux-riscv64/wheel/pynwb copying build/lib/pynwb/epoch.py -> build/bdist.linux-riscv64/wheel/pynwb copying build/lib/pynwb/_version.py -> build/bdist.linux-riscv64/wheel/pynwb copying build/lib/pynwb/device.py -> build/bdist.linux-riscv64/wheel/pynwb copying build/lib/pynwb/ogen.py -> build/bdist.linux-riscv64/wheel/pynwb creating build/bdist.linux-riscv64/wheel/pynwb/nwb-schema creating build/bdist.linux-riscv64/wheel/pynwb/nwb-schema/core copying build/lib/pynwb/nwb-schema/core/nwb.ogen.yaml -> build/bdist.linux-riscv64/wheel/pynwb/nwb-schema/core copying build/lib/pynwb/nwb-schema/core/nwb.retinotopy.yaml -> build/bdist.linux-riscv64/wheel/pynwb/nwb-schema/core copying build/lib/pynwb/nwb-schema/core/nwb.device.yaml -> build/bdist.linux-riscv64/wheel/pynwb/nwb-schema/core copying build/lib/pynwb/nwb-schema/core/nwb.ophys.yaml -> build/bdist.linux-riscv64/wheel/pynwb/nwb-schema/core copying build/lib/pynwb/nwb-schema/core/nwb.icephys.yaml -> build/bdist.linux-riscv64/wheel/pynwb/nwb-schema/core copying build/lib/pynwb/nwb-schema/core/nwb.behavior.yaml -> build/bdist.linux-riscv64/wheel/pynwb/nwb-schema/core copying build/lib/pynwb/nwb-schema/core/nwb.file.yaml -> build/bdist.linux-riscv64/wheel/pynwb/nwb-schema/core copying build/lib/pynwb/nwb-schema/core/nwb.ecephys.yaml -> build/bdist.linux-riscv64/wheel/pynwb/nwb-schema/core copying build/lib/pynwb/nwb-schema/core/nwb.base.yaml -> build/bdist.linux-riscv64/wheel/pynwb/nwb-schema/core copying build/lib/pynwb/nwb-schema/core/nwb.misc.yaml -> build/bdist.linux-riscv64/wheel/pynwb/nwb-schema/core copying build/lib/pynwb/nwb-schema/core/nwb.namespace.yaml -> build/bdist.linux-riscv64/wheel/pynwb/nwb-schema/core copying build/lib/pynwb/nwb-schema/core/nwb.image.yaml -> build/bdist.linux-riscv64/wheel/pynwb/nwb-schema/core copying build/lib/pynwb/nwb-schema/core/nwb.epoch.yaml -> build/bdist.linux-riscv64/wheel/pynwb/nwb-schema/core copying build/lib/pynwb/ophys.py -> build/bdist.linux-riscv64/wheel/pynwb copying build/lib/pynwb/retinotopy.py -> build/bdist.linux-riscv64/wheel/pynwb copying build/lib/pynwb/behavior.py -> build/bdist.linux-riscv64/wheel/pynwb copying build/lib/pynwb/spec.py -> build/bdist.linux-riscv64/wheel/pynwb copying build/lib/pynwb/misc.py -> build/bdist.linux-riscv64/wheel/pynwb running install_egg_info running egg_info writing src/pynwb.egg-info/PKG-INFO writing dependency_links to src/pynwb.egg-info/dependency_links.txt writing requirements to src/pynwb.egg-info/requires.txt writing top-level names to src/pynwb.egg-info/top_level.txt reading manifest file 'src/pynwb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'src/pynwb.egg-info/SOURCES.txt' Copying src/pynwb.egg-info to build/bdist.linux-riscv64/wheel/pynwb-2.5.0-py3.12.egg-info running install_scripts creating build/bdist.linux-riscv64/wheel/pynwb-2.5.0.dist-info/WHEEL creating '/builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir/pip-wheel-_gp2silu/.tmp-i0joa0hv/pynwb-2.5.0-py3-none-any.whl' and adding 'build/bdist.linux-riscv64/wheel' to it adding 'pynwb/__init__.py' adding 'pynwb/_due.py' adding 'pynwb/_version.py' adding 'pynwb/base.py' adding 'pynwb/behavior.py' adding 'pynwb/core.py' adding 'pynwb/device.py' adding 'pynwb/ecephys.py' adding 'pynwb/epoch.py' adding 'pynwb/file.py' adding 'pynwb/icephys.py' adding 'pynwb/image.py' adding 'pynwb/misc.py' adding 'pynwb/ogen.py' adding 'pynwb/ophys.py' adding 'pynwb/resources.py' adding 'pynwb/retinotopy.py' adding 'pynwb/spec.py' adding 'pynwb/validate.py' adding 'pynwb/io/__init__.py' adding 'pynwb/io/base.py' adding 'pynwb/io/behavior.py' adding 'pynwb/io/core.py' adding 'pynwb/io/ecephys.py' adding 'pynwb/io/epoch.py' adding 'pynwb/io/file.py' adding 'pynwb/io/icephys.py' adding 'pynwb/io/image.py' adding 'pynwb/io/misc.py' adding 'pynwb/io/ogen.py' adding 'pynwb/io/ophys.py' adding 'pynwb/io/retinotopy.py' adding 'pynwb/io/utils.py' adding 'pynwb/legacy/__init__.py' adding 'pynwb/legacy/map.py' adding 'pynwb/legacy/io/__init__.py' adding 'pynwb/legacy/io/base.py' adding 'pynwb/legacy/io/behavior.py' adding 'pynwb/legacy/io/ecephys.py' adding 'pynwb/legacy/io/epoch.py' adding 'pynwb/legacy/io/file.py' adding 'pynwb/legacy/io/icephys.py' adding 'pynwb/legacy/io/image.py' adding 'pynwb/legacy/io/misc.py' adding 'pynwb/legacy/io/ogen.py' adding 'pynwb/legacy/io/ophys.py' adding 'pynwb/legacy/io/retinotopy.py' adding 'pynwb/nwb-schema/core/nwb.base.yaml' adding 'pynwb/nwb-schema/core/nwb.behavior.yaml' adding 'pynwb/nwb-schema/core/nwb.device.yaml' adding 'pynwb/nwb-schema/core/nwb.ecephys.yaml' adding 'pynwb/nwb-schema/core/nwb.epoch.yaml' adding 'pynwb/nwb-schema/core/nwb.file.yaml' adding 'pynwb/nwb-schema/core/nwb.icephys.yaml' adding 'pynwb/nwb-schema/core/nwb.image.yaml' adding 'pynwb/nwb-schema/core/nwb.misc.yaml' adding 'pynwb/nwb-schema/core/nwb.namespace.yaml' adding 'pynwb/nwb-schema/core/nwb.ogen.yaml' adding 'pynwb/nwb-schema/core/nwb.ophys.yaml' adding 'pynwb/nwb-schema/core/nwb.retinotopy.yaml' adding 'pynwb/testing/__init__.py' adding 'pynwb/testing/icephys_testutils.py' adding 'pynwb/testing/make_test_files.py' adding 'pynwb/testing/testh5io.py' adding 'pynwb/testing/utils.py' adding 'pynwb/testing/mock/__init__.py' adding 'pynwb/testing/mock/base.py' adding 'pynwb/testing/mock/behavior.py' adding 'pynwb/testing/mock/device.py' adding 'pynwb/testing/mock/ecephys.py' adding 'pynwb/testing/mock/file.py' adding 'pynwb/testing/mock/icephys.py' adding 'pynwb/testing/mock/ogen.py' adding 'pynwb/testing/mock/ophys.py' adding 'pynwb/testing/mock/utils.py' adding 'pynwb-2.5.0.dist-info/METADATA' adding 'pynwb-2.5.0.dist-info/WHEEL' adding 'pynwb-2.5.0.dist-info/top_level.txt' adding 'pynwb-2.5.0.dist-info/RECORD' removing build/bdist.linux-riscv64/wheel Building wheel for pynwb (pyproject.toml): finished with status 'done' Created wheel for pynwb: filename=pynwb-2.5.0-py3-none-any.whl size=134111 sha256=7b978e44990c8cf58f9d6f3ff5e4ef456e3d746a7ff3a1508967ae2e7d0c6ed2 Stored in directory: /builddir/.cache/pip/wheels/58/ec/5f/a7ab6a9780ebfe545ee4d04d88fcf2bfb2887fe86920c88f4b Successfully built pynwb + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.y0lPqw + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch '!=' / ']' + rm -rf /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch ++ dirname /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pynwb-2.5.0 ++ xargs basename --multiple ++ ls /builddir/build/BUILD/pynwb-2.5.0/pyproject-wheeldir/pynwb-2.5.0-py3-none-any.whl ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=pynwb==2.5.0 + '[' -z pynwb==2.5.0 ']' + TMPDIR=/builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/pynwb-2.5.0/pyproject-wheeldir pynwb==2.5.0 Using pip 23.2.1 from /usr/lib/python3.12/site-packages/pip (python 3.12) Looking in links: /builddir/build/BUILD/pynwb-2.5.0/pyproject-wheeldir Processing ./pyproject-wheeldir/pynwb-2.5.0-py3-none-any.whl Installing collected packages: pynwb Successfully installed pynwb-2.5.0 + '[' -d /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/bin ']' + rm -f /builddir/build/BUILD/python-pynwb-2.5.0-1.fc40.noarch-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages ']' + site_dirs+=("/usr/lib/python3.12/site-packages") + '[' /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib64/python3.12/site-packages '!=' /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages ']' + '[' -d /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib64/python3.12/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.12/site-packages/pynwb-2.5.0.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb-2.5.0.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch --record /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb-2.5.0.dist-info/RECORD --output /builddir/build/BUILD/python-pynwb-2.5.0-1.fc40.noarch-pyproject-record + rm -fv /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb-2.5.0.dist-info/RECORD removed '/builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb-2.5.0.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb-2.5.0.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb-2.5.0.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/python-pynwb-2.5.0-1.fc40.noarch-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_PERCENTAGES_COUNT=2 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-pynwb-2.5.0-1.fc40.noarch-pyproject-files --output-modules /builddir/build/BUILD/python-pynwb-2.5.0-1.fc40.noarch-pyproject-modules --buildroot /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch --sitelib /usr/lib/python3.12/site-packages --sitearch /usr/lib64/python3.12/site-packages --python-version 3.12 --pyproject-record /builddir/build/BUILD/python-pynwb-2.5.0-1.fc40.noarch-pyproject-record --prefix /usr pynwb + /usr/bin/find-debuginfo -j8 --strict-build-id -m -i --build-id-seed 2.5.0-1.fc40 --unique-debug-suffix -2.5.0-1.fc40.noarch --unique-debug-src-base python-pynwb-2.5.0-1.fc40.noarch --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/pynwb-2.5.0 find-debuginfo: starting Extracting debug info from 0 files Creating .debug symlinks for symlinks to ELF files find: ‘debug’: No such file or directory find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j8 Bytecompiling .py files below /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12 using python3.12 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.KaT7Q0 + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pynwb-2.5.0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + PATH=/builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=8 + /usr/bin/python3 ./test.py --backwards --example --integration --pynwb --validation-module --verbose ====================================================================== 2023-12-19 22:23:38,027 - INFO - running pynwb unit tests test_init (unit.test_base.TestImage.test_init) ... test_images (unit.test_base.TestImages.test_images) ... test_add_data_interface (unit.test_base.TestProcessingModule.test_add_data_interface) Test adding a data interface to a ProcessingModule using add(...) and retrieving it. ... test_deprecated_add_container (unit.test_base.TestProcessingModule.test_deprecated_add_container) ... test_deprecated_add_data_interface (unit.test_base.TestProcessingModule.test_deprecated_add_data_interface) ... test_deprecated_get_container (unit.test_base.TestProcessingModule.test_deprecated_get_container) ... test_deprecated_get_data_interface (unit.test_base.TestProcessingModule.test_deprecated_get_data_interface) ... test_get_data_interface (unit.test_base.TestProcessingModule.test_get_data_interface) Test adding a data interface to a ProcessingModule and retrieving it using get(...). ... test_getitem (unit.test_base.TestProcessingModule.test_getitem) Test adding a data interface to a ProcessingModule and retrieving it using __getitem__(...). ... test_init (unit.test_base.TestProcessingModule.test_init) Test creating a ProcessingModule. ... test_bad_continuity_timeseries (unit.test_base.TestTimeSeries.test_bad_continuity_timeseries) ... test_conflicting_time_args (unit.test_base.TestTimeSeries.test_conflicting_time_args) ... test_data_timeseries (unit.test_base.TestTimeSeries.test_data_timeseries) Test that setting a TimeSeries.data to another TimeSeries links the data correctly. ... test_dataio_dci_data (unit.test_base.TestTimeSeries.test_dataio_dci_data) ... test_dataio_dci_timestamps (unit.test_base.TestTimeSeries.test_dataio_dci_timestamps) ... test_dataio_list_data (unit.test_base.TestTimeSeries.test_dataio_list_data) ... test_dataio_list_timestamps (unit.test_base.TestTimeSeries.test_dataio_list_timestamps) ... test_dci_data (unit.test_base.TestTimeSeries.test_dci_data) ... test_dci_data_arr (unit.test_base.TestTimeSeries.test_dci_data_arr) ... test_dci_timestamps (unit.test_base.TestTimeSeries.test_dci_timestamps) ... test_dci_timestamps_arr (unit.test_base.TestTimeSeries.test_dci_timestamps_arr) ... test_dimension_warning (unit.test_base.TestTimeSeries.test_dimension_warning) ... test_get_data_in_units (unit.test_base.TestTimeSeries.test_get_data_in_units) ... test_get_timestamps (unit.test_base.TestTimeSeries.test_get_timestamps) ... test_good_continuity_timeseries (unit.test_base.TestTimeSeries.test_good_continuity_timeseries) ... test_init_conversion_offset (unit.test_base.TestTimeSeries.test_init_conversion_offset) ... test_init_data_timestamps (unit.test_base.TestTimeSeries.test_init_data_timestamps) ... test_init_datalink_set (unit.test_base.TestTimeSeries.test_init_datalink_set) Test creating a TimeSeries and that data_link is an empty set. ... test_init_no_parent (unit.test_base.TestTimeSeries.test_init_no_parent) Test creating an empty TimeSeries and that it has no parent. ... test_init_rate (unit.test_base.TestTimeSeries.test_init_rate) ... test_init_timestampslink_set (unit.test_base.TestTimeSeries.test_init_timestampslink_set) Test creating a TimeSeries and that timestamps_link is an empty set. ... test_no_starting_time (unit.test_base.TestTimeSeries.test_no_starting_time) Test that if no starting_time is given, 0.0 is assumed. ... test_no_time (unit.test_base.TestTimeSeries.test_no_time) ... test_timestamps_timeseries (unit.test_base.TestTimeSeries.test_timestamps_timeseries) Test that setting a TimeSeries.timestamps to another TimeSeries links the timestamps correctly. ... test_check_types (unit.test_base.TestTimeSeriesReference.test_check_types) ... test_data_property (unit.test_base.TestTimeSeriesReference.test_data_property) ... test_data_property_bad_reference (unit.test_base.TestTimeSeriesReference.test_data_property_bad_reference) ... test_data_property_invalid_reference (unit.test_base.TestTimeSeriesReference.test_data_property_invalid_reference) ... test_is_invalid (unit.test_base.TestTimeSeriesReference.test_is_invalid) ... test_is_valid (unit.test_base.TestTimeSeriesReference.test_is_valid) ... test_is_valid_bad_index (unit.test_base.TestTimeSeriesReference.test_is_valid_bad_index) ... test_is_valid_no_num_samples (unit.test_base.TestTimeSeriesReference.test_is_valid_no_num_samples) ... test_timestamps_property (unit.test_base.TestTimeSeriesReference.test_timestamps_property) ... test_timestamps_property_bad_reference (unit.test_base.TestTimeSeriesReference.test_timestamps_property_bad_reference) ... test_timestamps_property_invalid_reference (unit.test_base.TestTimeSeriesReference.test_timestamps_property_invalid_reference) ... test_add_row (unit.test_base.TestTimeSeriesReferenceVectorData.test_add_row) ... test_add_row_get_length1_valid_data (unit.test_base.TestTimeSeriesReferenceVectorData.test_add_row_get_length1_valid_data) Get data from a TimeSeriesReferenceVectorData with one element and valid data ... test_add_row_restricted_type (unit.test_base.TestTimeSeriesReferenceVectorData.test_add_row_restricted_type) ... test_add_row_with_bad_tuple (unit.test_base.TestTimeSeriesReferenceVectorData.test_add_row_with_bad_tuple) ... test_add_row_with_plain_tuple (unit.test_base.TestTimeSeriesReferenceVectorData.test_add_row_with_plain_tuple) ... test_append (unit.test_base.TestTimeSeriesReferenceVectorData.test_append) ... test_append_get_length1_valid_data (unit.test_base.TestTimeSeriesReferenceVectorData.test_append_get_length1_valid_data) Get data from a TimeSeriesReferenceVectorData with one element and valid data ... test_append_restricted_type (unit.test_base.TestTimeSeriesReferenceVectorData.test_append_restricted_type) ... test_append_with_bad_tuple (unit.test_base.TestTimeSeriesReferenceVectorData.test_append_with_bad_tuple) ... test_append_with_plain_tuple (unit.test_base.TestTimeSeriesReferenceVectorData.test_append_with_plain_tuple) ... test_get_empty (unit.test_base.TestTimeSeriesReferenceVectorData.test_get_empty) Get data from an empty TimeSeriesReferenceVectorData ... test_get_length1_invalid_data (unit.test_base.TestTimeSeriesReferenceVectorData.test_get_length1_invalid_data) Get data from a TimeSeriesReferenceVectorData with one element and invalid data ... test_get_length5_valid_data (unit.test_base.TestTimeSeriesReferenceVectorData.test_get_length5_valid_data) Get data from a TimeSeriesReferenceVectorData with 5 elements ... test_get_length5_with_invalid_data (unit.test_base.TestTimeSeriesReferenceVectorData.test_get_length5_with_invalid_data) Get data from a TimeSeriesReferenceVectorData with 5 elements ... test_init (unit.test_base.TestTimeSeriesReferenceVectorData.test_init) ... test_init (unit.test_behavior.BehavioralEpochsConstructor.test_init) ... test_init (unit.test_behavior.BehavioralEventsConstructor.test_init) ... test_init (unit.test_behavior.BehavioralTimeSeriesConstructor.test_init) ... test_init (unit.test_behavior.CompassDirectionConstructor.test_init) ... test_init (unit.test_behavior.EyeTrackingConstructor.test_init) ... test_init (unit.test_behavior.PositionConstructor.test_init) ... test_init (unit.test_behavior.PupilTrackingConstructor.test_init) ... test_gt_3_cols (unit.test_behavior.SpatialSeriesConstructor.test_gt_3_cols) ... test_init (unit.test_behavior.SpatialSeriesConstructor.test_init) ... test_set_unit (unit.test_behavior.SpatialSeriesConstructor.test_set_unit) ... test_available_namespaces (unit.test_core.TestAvailableNamespaces.test_available_namespaces) ... test_constructor (unit.test_core.TestNWBContainer.test_constructor) Test constructor ... test_nwbfields (unit.test_core.TestNWBContainer.test_nwbfields) Test that getters and setters work for nwbfields ... test_append_list (unit.test_core.TestNWBData.test_append_list) ... test_append_ndarray_2d (unit.test_core.TestNWBData.test_append_ndarray_2d) ... test_constructor (unit.test_core.TestNWBData.test_constructor) Test constructor ... test_extend_list (unit.test_core.TestNWBData.test_extend_list) ... test_extend_ndarray_1d (unit.test_core.TestNWBData.test_extend_ndarray_1d) ... test_extend_ndarray_2d (unit.test_core.TestNWBData.test_extend_ndarray_2d) ... test_print_file (unit.test_core.TestPrint.test_print_file) ... test_constructor (unit.test_core_NWBContainer.TestNWBContainer.test_constructor) Test constructor ... test_nwbfields (unit.test_core_NWBContainer.TestNWBContainer.test_nwbfields) Test that getters and setters work for nwbfields ... test_init (unit.test_device.TestDevice.test_init) ... test_init (unit.test_ecephys.ClusterWaveformsConstructor.test_init) ... test_init (unit.test_ecephys.ClusteringConstructor.test_init) ... test_dimensions_warning (unit.test_ecephys.ElectricalSeriesConstructor.test_dimensions_warning) ... test_init (unit.test_ecephys.ElectricalSeriesConstructor.test_init) ... test_invalid_data_shape (unit.test_ecephys.ElectricalSeriesConstructor.test_invalid_data_shape) ... test_link (unit.test_ecephys.ElectricalSeriesConstructor.test_link) ... test_init (unit.test_ecephys.ElectrodeGroupConstructor.test_init) ... test_init_position_bad (unit.test_ecephys.ElectrodeGroupConstructor.test_init_position_bad) ... test_init_position_none (unit.test_ecephys.ElectrodeGroupConstructor.test_init_position_none) ... test_init (unit.test_ecephys.EventDetectionConstructor.test_init) ... test_init (unit.test_ecephys.EventWaveformConstructor.test_init) ... test_init (unit.test_ecephys.FeatureExtractionConstructor.test_init) ... test_invalid_init_mismatched_description (unit.test_ecephys.FeatureExtractionConstructor.test_invalid_init_mismatched_description) ... test_invalid_init_mismatched_description2 (unit.test_ecephys.FeatureExtractionConstructor.test_invalid_init_mismatched_description2) ... test_invalid_init_mismatched_electrodes (unit.test_ecephys.FeatureExtractionConstructor.test_invalid_init_mismatched_electrodes) ... test_invalid_init_mismatched_event_times (unit.test_ecephys.FeatureExtractionConstructor.test_invalid_init_mismatched_event_times) ... test_add_electrical_series (unit.test_ecephys.FilteredEphysTest.test_add_electrical_series) ... test_init (unit.test_ecephys.FilteredEphysTest.test_init) ... test_add_electrical_series (unit.test_ecephys.LFPTest.test_add_electrical_series) ... test_init (unit.test_ecephys.LFPTest.test_init) ... test_incorrect_timestamps (unit.test_ecephys.SpikeEventSeriesConstructor.test_incorrect_timestamps) ... test_init (unit.test_ecephys.SpikeEventSeriesConstructor.test_init) ... test_no_rate (unit.test_ecephys.SpikeEventSeriesConstructor.test_no_rate) ... test_dataframe_roundtrip (unit.test_epoch.TimeIntervalsTest.test_dataframe_roundtrip) ... test_dataframe_roundtrip_drop_ts (unit.test_epoch.TimeIntervalsTest.test_dataframe_roundtrip_drop_ts) ... test_from_dataframe (unit.test_epoch.TimeIntervalsTest.test_from_dataframe) ... test_from_dataframe_missing_required_cols (unit.test_epoch.TimeIntervalsTest.test_from_dataframe_missing_required_cols) ... test_from_dataframe_missing_supplied_col (unit.test_epoch.TimeIntervalsTest.test_from_dataframe_missing_supplied_col) ... test_init (unit.test_epoch.TimeIntervalsTest.test_init) ... /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) test_no_tags (unit.test_epoch.TimeIntervalsTest.test_no_tags) ... /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) test_legacy_format (unit.test_epoch_legacy.TestTimeIntervalsIO.test_legacy_format) ... test_roundtrip (unit.test_epoch_legacy.TestTimeIntervalsIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (unit.test_epoch_legacy.TestTimeIntervalsIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_catch_dup_name (unit.test_extension.TestCatchDupNS.test_catch_dup_name) ... test_export (unit.test_extension.TestExtension.test_export) ... test_get_class (unit.test_extension.TestExtension.test_get_class) ... test_lab_meta (unit.test_extension.TestExtension.test_lab_meta) ... test_lab_meta_auto (unit.test_extension.TestExtension.test_lab_meta_auto) ... test_load_namespace (unit.test_extension.TestExtension.test_load_namespace) ... test_load_namespace_with_reftype_attribute (unit.test_extension.TestExtension.test_load_namespace_with_reftype_attribute) ... test_load_namespace_with_reftype_attribute_check_autoclass_const (unit.test_extension.TestExtension.test_load_namespace_with_reftype_attribute_check_autoclass_const) ... test_access_group_after_io (unit.test_file.NWBFileTest.test_access_group_after_io) Motivated by #739 ... test_access_processing (unit.test_file.NWBFileTest.test_access_processing) ... test_add_acquisition (unit.test_file.NWBFileTest.test_add_acquisition) ... test_add_acquisition_check_dups (unit.test_file.NWBFileTest.test_add_acquisition_check_dups) ... test_add_acquisition_invalid_name (unit.test_file.NWBFileTest.test_add_acquisition_invalid_name) ... test_add_analysis (unit.test_file.NWBFileTest.test_add_analysis) ... test_add_electrode (unit.test_file.NWBFileTest.test_add_electrode) ... /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) test_add_electrode_missing_group (unit.test_file.NWBFileTest.test_add_electrode_missing_group) Test the case where the user creates an electrode table region with ... test_add_electrode_missing_location (unit.test_file.NWBFileTest.test_add_electrode_missing_location) Test the case where the user creates an electrode table region with ... test_add_electrode_some_opt (unit.test_file.NWBFileTest.test_add_electrode_some_opt) ... /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) test_add_invalid_time_interval (unit.test_file.NWBFileTest.test_add_invalid_time_interval) ... test_add_invalid_time_w_ts (unit.test_file.NWBFileTest.test_add_invalid_time_w_ts) ... test_add_invalid_times_column (unit.test_file.NWBFileTest.test_add_invalid_times_column) ... test_add_stimulus (unit.test_file.NWBFileTest.test_add_stimulus) ... test_add_stimulus_template (unit.test_file.NWBFileTest.test_add_stimulus_template) ... test_add_stimulus_template_images (unit.test_file.NWBFileTest.test_add_stimulus_template_images) ... test_add_trial (unit.test_file.NWBFileTest.test_add_trial) ... test_add_trial_column (unit.test_file.NWBFileTest.test_add_trial_column) ... test_add_unit (unit.test_file.NWBFileTest.test_add_unit) ... test_add_unit_column (unit.test_file.NWBFileTest.test_add_unit_column) ... test_all_children (unit.test_file.NWBFileTest.test_all_children) ... test_constructor (unit.test_file.NWBFileTest.test_constructor) ... test_copy (unit.test_file.NWBFileTest.test_copy) ... test_create_custom_intervals (unit.test_file.NWBFileTest.test_create_custom_intervals) ... test_create_electrode_group (unit.test_file.NWBFileTest.test_create_electrode_group) ... test_create_electrode_group_invalid_index (unit.test_file.NWBFileTest.test_create_electrode_group_invalid_index) Test the case where the user creates an electrode table region with ... test_epoch_tags (unit.test_file.NWBFileTest.test_epoch_tags) ... test_fail_if_source_script_file_name_without_source_script (unit.test_file.NWBFileTest.test_fail_if_source_script_file_name_without_source_script) ... test_get_acquisition_empty (unit.test_file.NWBFileTest.test_get_acquisition_empty) ... test_get_acquisition_multiple_elements (unit.test_file.NWBFileTest.test_get_acquisition_multiple_elements) ... test_get_neurodata_type (unit.test_file.NWBFileTest.test_get_neurodata_type) ... test_multi_experimenters (unit.test_file.NWBFileTest.test_multi_experimenters) ... test_multi_publications (unit.test_file.NWBFileTest.test_multi_publications) ... test_print_units (unit.test_file.NWBFileTest.test_print_units) ... test_set_electrode_table (unit.test_file.NWBFileTest.test_set_electrode_table) ... test_age_reference_arg_check (unit.test_file.SubjectTest.test_age_reference_arg_check) ... test_age_regression_1 (unit.test_file.SubjectTest.test_age_regression_1) ... test_age_regression_2 (unit.test_file.SubjectTest.test_age_regression_2) ... test_constructor (unit.test_file.SubjectTest.test_constructor) ... test_nwbfile_constructor (unit.test_file.SubjectTest.test_nwbfile_constructor) ... test_subject_age_duration (unit.test_file.SubjectTest.test_subject_age_duration) ... test_weight_float (unit.test_file.SubjectTest.test_weight_float) ... test_simple (unit.test_file.TestCacheSpec.test_simple) ... test_simple (unit.test_file.TestNoCacheSpec.test_simple) ... test_reftime_tzaware (unit.test_file.TestTimestampsRefAware.test_reftime_tzaware) ... test_reftime_default (unit.test_file.TestTimestampsRefDefault.test_reftime_default) ... test_raise_warning__add_missing_timezone (unit.test_file.TestTimezone.test_raise_warning__add_missing_timezone) ... test_init (unit.test_icephys.CurrentClampSeriesConstructor.test_init) ... test_unit_warning (unit.test_icephys.CurrentClampSeriesConstructor.test_unit_warning) ... test_init (unit.test_icephys.CurrentClampStimulusSeriesConstructor.test_init) ... test_unit_warning (unit.test_icephys.CurrentClampStimulusSeriesConstructor.test_unit_warning) ... test_init (unit.test_icephys.IZeroClampSeriesConstructor.test_init) ... test_stim_desc_warning (unit.test_icephys.IZeroClampSeriesConstructor.test_stim_desc_warning) ... test_unit_warning (unit.test_icephys.IZeroClampSeriesConstructor.test_unit_warning) ... test_constructor (unit.test_icephys.IntracellularElectrodeConstructor.test_constructor) ... test_add_ic_electrode_deprecation (unit.test_icephys.NWBFileICEphys.test_add_ic_electrode_deprecation) ... test_create_ic_electrode_deprecation (unit.test_icephys.NWBFileICEphys.test_create_ic_electrode_deprecation) ... test_ic_electrodes_attribute_deprecation (unit.test_icephys.NWBFileICEphys.test_ic_electrodes_attribute_deprecation) ... test_ic_electrodes_parameter_deprecation (unit.test_icephys.NWBFileICEphys.test_ic_electrodes_parameter_deprecation) ... test_icephys_electrodes_parameter (unit.test_icephys.NWBFileICEphys.test_icephys_electrodes_parameter) ... test_sweep_table_depractation_warn (unit.test_icephys.NWBFileICEphys.test_sweep_table_depractation_warn) ... test_data_shape (unit.test_icephys.PatchClampSeriesConstructor.test_data_shape) ... test_default (unit.test_icephys.PatchClampSeriesConstructor.test_default) ... test_sweepNumber_large_and_valid (unit.test_icephys.PatchClampSeriesConstructor.test_sweepNumber_large_and_valid) ... test_sweepNumber_throws_with_Float (unit.test_icephys.PatchClampSeriesConstructor.test_sweepNumber_throws_with_Float) ... test_sweepNumber_throws_with_NaN (unit.test_icephys.PatchClampSeriesConstructor.test_sweepNumber_throws_with_NaN) ... test_sweepNumber_throws_with_negative (unit.test_icephys.PatchClampSeriesConstructor.test_sweepNumber_throws_with_negative) ... test_sweepNumber_valid (unit.test_icephys.PatchClampSeriesConstructor.test_sweepNumber_valid) ... test_sweepNumber_valid_np (unit.test_icephys.PatchClampSeriesConstructor.test_sweepNumber_valid_np) ... test_init (unit.test_icephys.VoltageClampSeriesConstructor.test_init) ... test_unit_warning (unit.test_icephys.VoltageClampSeriesConstructor.test_unit_warning) ... test_init (unit.test_icephys.VoltageClampStimulusSeriesConstructor.test_init) ... test_unit_warning (unit.test_icephys.VoltageClampStimulusSeriesConstructor.test_unit_warning) ... test_basic_write (unit.test_icephys_metadata_tables.ExperimentalConditionsTableTests.test_basic_write) Populate, write, and read the ExperimentalConditionsTable container and other required containers ... test_enforce_unique_id (unit.test_icephys_metadata_tables.ExperimentalConditionsTableTests.test_enforce_unique_id) Test to ensure that unique ids are enforced on RepetitionsTable table ... test_init (unit.test_icephys_metadata_tables.ExperimentalConditionsTableTests.test_init) Test __init__ to make sure we can instantiate the ExperimentalConditionsTable container ... test_missing_repetitions_on_init (unit.test_icephys_metadata_tables.ExperimentalConditionsTableTests.test_missing_repetitions_on_init) Test that ValueError is raised when repetitions is missing. This is ... test_add_column (unit.test_icephys_metadata_tables.IntracellularRecordingsTableTests.test_add_column) ... test_add_row (unit.test_icephys_metadata_tables.IntracellularRecordingsTableTests.test_add_row) ... test_add_row_check_start_index_and_index_count_are_fixed (unit.test_icephys_metadata_tables.IntracellularRecordingsTableTests.test_add_row_check_start_index_and_index_count_are_fixed) ... test_add_row_incompatible_types (unit.test_icephys_metadata_tables.IntracellularRecordingsTableTests.test_add_row_incompatible_types) ... test_add_row_index_out_of_range (unit.test_icephys_metadata_tables.IntracellularRecordingsTableTests.test_add_row_index_out_of_range) ... test_add_row_no_response (unit.test_icephys_metadata_tables.IntracellularRecordingsTableTests.test_add_row_no_response) ... test_add_row_no_stimulus (unit.test_icephys_metadata_tables.IntracellularRecordingsTableTests.test_add_row_no_stimulus) ... test_add_row_no_stimulus_and_response (unit.test_icephys_metadata_tables.IntracellularRecordingsTableTests.test_add_row_no_stimulus_and_response) ... test_basic_write (unit.test_icephys_metadata_tables.IntracellularRecordingsTableTests.test_basic_write) Populate, write, and read the SimultaneousRecordingsTable container and other required containers ... test_enforce_unique_id (unit.test_icephys_metadata_tables.IntracellularRecordingsTableTests.test_enforce_unique_id) Test to ensure that unique ids are enforced on RepetitionsTable table ... test_error_if_IZeroClampSeries_with_stimulus (unit.test_icephys_metadata_tables.IntracellularRecordingsTableTests.test_error_if_IZeroClampSeries_with_stimulus) ... test_inconsistent_PatchClampSeries (unit.test_icephys_metadata_tables.IntracellularRecordingsTableTests.test_inconsistent_PatchClampSeries) ... test_init (unit.test_icephys_metadata_tables.IntracellularRecordingsTableTests.test_init) ... test_no_electrode (unit.test_icephys_metadata_tables.IntracellularRecordingsTableTests.test_no_electrode) ... test_noerror_if_IZeroClampSeries (unit.test_icephys_metadata_tables.IntracellularRecordingsTableTests.test_noerror_if_IZeroClampSeries) ... test_round_trip_container_no_data (unit.test_icephys_metadata_tables.IntracellularRecordingsTableTests.test_round_trip_container_no_data) Test read and write the container by itself ... test_to_dataframe (unit.test_icephys_metadata_tables.IntracellularRecordingsTableTests.test_to_dataframe) ... test_write_with_stimulus_template (unit.test_icephys_metadata_tables.IntracellularRecordingsTableTests.test_write_with_stimulus_template) Populate, write, and read the SimultaneousRecordingsTable container and other required containers ... test_add_icephys_meta_full_roundtrip (unit.test_icephys_metadata_tables.NWBFileTests.test_add_icephys_meta_full_roundtrip) This test adds all data and then constructs step-by-step the full table structure ... test_deprecate_simultaneous_recordings_on_add_stimulus (unit.test_icephys_metadata_tables.NWBFileTests.test_deprecate_simultaneous_recordings_on_add_stimulus) Test that warnings are raised if the user tries to use a simultaneous_recordings table ... test_deprecate_sweepstable_on_add_acquistion (unit.test_icephys_metadata_tables.NWBFileTests.test_deprecate_sweepstable_on_add_acquistion) Test that warnings are raised if the user tries to use a sweeps table ... test_deprecate_sweepstable_on_init (unit.test_icephys_metadata_tables.NWBFileTests.test_deprecate_sweepstable_on_init) Test that warnings are raised if the user tries to use a sweeps table ... test_deprecate_sweeptable_on_add_stimulus_template (unit.test_icephys_metadata_tables.NWBFileTests.test_deprecate_sweeptable_on_add_stimulus_template) Make sure we warn when using the sweep-table ... test_deprectation_icephys_filtering_on_init (unit.test_icephys_metadata_tables.NWBFileTests.test_deprectation_icephys_filtering_on_init) ... test_get_icephys_meta_parent_table (unit.test_icephys_metadata_tables.NWBFileTests.test_get_icephys_meta_parent_table) Create the table hierarchy step-by-step and check that as we add tables the get_icephys_meta_parent_table ... test_icephys_filtering_roundtrip (unit.test_icephys_metadata_tables.NWBFileTests.test_icephys_filtering_roundtrip) ... test_basic_write (unit.test_icephys_metadata_tables.RepetitionsTableTests.test_basic_write) Populate, write, and read the RepetitionsTable container and other required containers ... test_enforce_unique_id (unit.test_icephys_metadata_tables.RepetitionsTableTests.test_enforce_unique_id) Test to ensure that unique ids are enforced on RepetitionsTable table ... test_init (unit.test_icephys_metadata_tables.RepetitionsTableTests.test_init) Test __init__ to make sure we can instantiate the RepetitionsTable container ... test_missing_sequential_recordings_on_init (unit.test_icephys_metadata_tables.RepetitionsTableTests.test_missing_sequential_recordings_on_init) Test that ValueError is raised when sequential_recordings is missing. This is ... test_basic_write (unit.test_icephys_metadata_tables.SequentialRecordingsTableTests.test_basic_write) Populate, write, and read the SequentialRecordingsTable container and other required containers ... test_enforce_unique_id (unit.test_icephys_metadata_tables.SequentialRecordingsTableTests.test_enforce_unique_id) Test to ensure that unique ids are enforced on RepetitionsTable table ... test_init (unit.test_icephys_metadata_tables.SequentialRecordingsTableTests.test_init) Test __init__ to make sure we can instantiate the SequentialRecordingsTable container ... test_missing_simultaneous_recordings_on_init (unit.test_icephys_metadata_tables.SequentialRecordingsTableTests.test_missing_simultaneous_recordings_on_init) Test that ValueError is raised when simultaneous_recordings is missing. This is ... test_add_simultaneous_recording (unit.test_icephys_metadata_tables.SimultaneousRecordingsTableTests.test_add_simultaneous_recording) Populate, write, and read the SimultaneousRecordingsTable container and other required containers ... test_basic_write (unit.test_icephys_metadata_tables.SimultaneousRecordingsTableTests.test_basic_write) Populate, write, and read the SimultaneousRecordingsTable container and other required containers ... test_enforce_unique_id (unit.test_icephys_metadata_tables.SimultaneousRecordingsTableTests.test_enforce_unique_id) Test to ensure that unique ids are enforced on RepetitionsTable table ... test_init (unit.test_icephys_metadata_tables.SimultaneousRecordingsTableTests.test_init) Test __init__ to make sure we can instantiate the SimultaneousRecordingsTable container ... test_missing_intracellular_recordings_on_init (unit.test_icephys_metadata_tables.SimultaneousRecordingsTableTests.test_missing_intracellular_recordings_on_init) Test that ValueError is raised when intracellular_recordings is missing. This is ... test_init (unit.test_image.ImageMaskSeriesConstructor.test_init) ... test_data_no_frame (unit.test_image.ImageSeriesConstructor.test_data_no_frame) ... test_data_no_unit (unit.test_image.ImageSeriesConstructor.test_data_no_unit) ... test_dimension_warning (unit.test_image.ImageSeriesConstructor.test_dimension_warning) Test that a warning is raised when the dimensions of the data are not the ... test_dimension_warning_external_file_with_rate (unit.test_image.ImageSeriesConstructor.test_dimension_warning_external_file_with_rate) Test that a warning is not raised when external file is used with rate. ... test_dimension_warning_external_file_with_timestamps (unit.test_image.ImageSeriesConstructor.test_dimension_warning_external_file_with_timestamps) Test that a warning is not raised when external file is used with timestamps. ... test_external_file_default_format (unit.test_image.ImageSeriesConstructor.test_external_file_default_format) Test that format is set to 'external' if not provided, when external_file is provided. ... test_external_file_no_frame (unit.test_image.ImageSeriesConstructor.test_external_file_no_frame) ... test_external_file_no_unit (unit.test_image.ImageSeriesConstructor.test_external_file_no_unit) ... test_external_file_with_correct_format (unit.test_image.ImageSeriesConstructor.test_external_file_with_correct_format) Test that warning is not raised when external_file is provided and format ... test_external_file_with_correct_starting_frame (unit.test_image.ImageSeriesConstructor.test_external_file_with_correct_starting_frame) Test that ValueError is not raised when the length of starting_frame ... test_external_file_with_data (unit.test_image.ImageSeriesConstructor.test_external_file_with_data) Test that ValueError is raised when external_file is provided and ... test_external_file_with_data_construct_mode (unit.test_image.ImageSeriesConstructor.test_external_file_with_data_construct_mode) Test that UserWarning is raised when external_file is provided and ... test_external_file_with_default_starting_frame (unit.test_image.ImageSeriesConstructor.test_external_file_with_default_starting_frame) Test that starting_frame is set to [0] if not provided, when external_file is has length 1. ... test_external_file_with_incorrect_format (unit.test_image.ImageSeriesConstructor.test_external_file_with_incorrect_format) Test that ValueError is raised when external_file is provided but ... test_external_file_with_incorrect_format_construct_mode (unit.test_image.ImageSeriesConstructor.test_external_file_with_incorrect_format_construct_mode) Test that UserWarning is raised when external_file is provided but ... test_external_file_with_incorrect_starting_frame (unit.test_image.ImageSeriesConstructor.test_external_file_with_incorrect_starting_frame) Test that ValueError is raised when the length of starting_frame ... test_external_file_with_incorrect_starting_frame_construct_mode (unit.test_image.ImageSeriesConstructor.test_external_file_with_incorrect_starting_frame_construct_mode) Test that warning is raised when the length of starting_frame ... test_init (unit.test_image.ImageSeriesConstructor.test_init) ... test_no_data_no_file (unit.test_image.ImageSeriesConstructor.test_no_data_no_file) ... test_init (unit.test_image.IndexSeriesConstructor.test_init) ... test_init_bad_unit (unit.test_image.IndexSeriesConstructor.test_init_bad_unit) ... test_init_indexed_ts (unit.test_image.IndexSeriesConstructor.test_init_indexed_ts) ... test_init (unit.test_image.OpticalSeriesConstructor.test_init) ... test_grayscale_image (unit.test_image.TestImageSubtypes.test_grayscale_image) ... test_rgb_image (unit.test_image.TestImageSubtypes.test_rgb_image) ... test_rgba_image (unit.test_image.TestImageSubtypes.test_rgba_image) ... test_init (unit.test_misc.AbstractFeatureSeriesConstructor.test_init) ... test_init (unit.test_misc.AnnotationSeriesConstructor.test_init) ... test_init (unit.test_misc.DecompositionSeriesConstructor.test_init) ... test_init_delayed_bands (unit.test_misc.DecompositionSeriesConstructor.test_init_delayed_bands) ... test_init_with_source_channels (unit.test_misc.DecompositionSeriesConstructor.test_init_with_source_channels) ... test_add_interval (unit.test_misc.IntervalSeriesConstructor.test_add_interval) ... test_init (unit.test_misc.IntervalSeriesConstructor.test_init) ... test_add_spike_times (unit.test_misc.UnitsTests.test_add_spike_times) ... test_add_waveforms (unit.test_misc.UnitsTests.test_add_waveforms) ... test_electrode_group (unit.test_misc.UnitsTests.test_electrode_group) ... test_get_obs_intervals (unit.test_misc.UnitsTests.test_get_obs_intervals) ... test_get_spike_times (unit.test_misc.UnitsTests.test_get_spike_times) ... test_get_spike_times_interval (unit.test_misc.UnitsTests.test_get_spike_times_interval) ... test_get_spike_times_multi (unit.test_misc.UnitsTests.test_get_spike_times_multi) ... test_get_spike_times_multi_interval (unit.test_misc.UnitsTests.test_get_spike_times_multi_interval) ... test_init (unit.test_misc.UnitsTests.test_init) ... test_obs_intervals (unit.test_misc.UnitsTests.test_obs_intervals) ... test_times (unit.test_misc.UnitsTests.test_times) ... test_times_and_intervals (unit.test_misc.UnitsTests.test_times_and_intervals) ... test_waveform_attrs (unit.test_misc.UnitsTests.test_waveform_attrs) ... test_init (unit.test_ogen.OptogeneticSeriesConstructor.test_init) ... test_init (unit.test_ophys.CorrectedImageStackConstructor.test_init) ... test_init (unit.test_ophys.DfOverFConstructor.test_init) ... test_init (unit.test_ophys.FluorescenceConstructor.test_init) ... test_init (unit.test_ophys.ImageSegmentationConstructor.test_init) ... test_conversion_deprecated (unit.test_ophys.ImagingPlaneConstructor.test_conversion_deprecated) ... test_init (unit.test_ophys.ImagingPlaneConstructor.test_init) ... test_manifold_deprecated (unit.test_ophys.ImagingPlaneConstructor.test_manifold_deprecated) ... test_unit_deprecated (unit.test_ophys.ImagingPlaneConstructor.test_unit_deprecated) ... test_init (unit.test_ophys.MotionCorrectionConstructor.test_init) ... test_init (unit.test_ophys.OnePhotonSeriesConstructor.test_init) ... test_negative_binning_assertion (unit.test_ophys.OnePhotonSeriesConstructor.test_negative_binning_assertion) ... test_init (unit.test_ophys.OpticalChannelConstructor.test_init) ... test_conversion_of_2d_image_mask_to_pixel_mask (unit.test_ophys.PlaneSegmentationConstructor.test_conversion_of_2d_image_mask_to_pixel_mask) ... test_conversion_of_2d_pixel_mask_to_image_mask (unit.test_ophys.PlaneSegmentationConstructor.test_conversion_of_2d_pixel_mask_to_image_mask) ... test_init (unit.test_ophys.PlaneSegmentationConstructor.test_init) ... test_init_3d_image_mask (unit.test_ophys.PlaneSegmentationConstructor.test_init_3d_image_mask) ... test_init_image_mask (unit.test_ophys.PlaneSegmentationConstructor.test_init_image_mask) ... test_init_pixel_mask (unit.test_ophys.PlaneSegmentationConstructor.test_init_pixel_mask) ... test_init_voxel_mask (unit.test_ophys.PlaneSegmentationConstructor.test_init_voxel_mask) ... test_init (unit.test_ophys.RoiResponseSeriesConstructor.test_init) ... test_warnings (unit.test_ophys.RoiResponseSeriesConstructor.test_warnings) ... test_init (unit.test_ophys.TwoPhotonSeriesConstructor.test_init) ... test_constructor (unit.test_resources.TestNWBContainer.test_constructor) Test constructor ... test_init (unit.test_retinotopy.AxisMapConstructor.test_init) Test that AxisMap constructor sets properties correctly. ... test_init_dimension_wrong_shape (unit.test_retinotopy.AxisMapConstructor.test_init_dimension_wrong_shape) Test that creating an AxisMap with a dimension argument that is not 2 elements raises an error. ... test_init_fov_wrong_shape (unit.test_retinotopy.AxisMapConstructor.test_init_fov_wrong_shape) Test that creating an AxisMap with a dimension argument that is not 2 elements raises an error. ... test_init (unit.test_retinotopy.FocalDepthImageConstructor.test_init) Test that FocalDepthImage constructor sets properties correctly. ... test_init (unit.test_retinotopy.ImageRetinotopyConstructor.test_init) Test that ImagingRetinotopy constructor sets properties correctly. ... test_init_axis_descriptions_wrong_shape (unit.test_retinotopy.ImageRetinotopyConstructor.test_init_axis_descriptions_wrong_shape) Test that creating a ImagingRetinotopy with a axis descriptions argument that is not 2 elements raises an ... test_init (unit.test_retinotopy.RetinotopyImageConstructor.test_init) Test that RetinotopyImage constructor sets properties correctly. ... test_init_dimension_wrong_shape (unit.test_retinotopy.RetinotopyImageConstructor.test_init_dimension_wrong_shape) Test that creating a RetinotopyImage with a dimension argument that is not 2 elements raises an error. ... test_init_fov_wrong_shape (unit.test_retinotopy.RetinotopyImageConstructor.test_init_fov_wrong_shape) Test that creating a RetinotopyImage with a field of view argument that is not 2 elements raises an error. ... test_init (unit.test_retinotopy.RetinotopyMapConstructor.test_init) Test that RetinotopyMap constructor sets properties correctly. ... test_add_scratch_container (unit.test_scratch.TestScratchData.test_add_scratch_container) ... test_add_scratch_container_description (unit.test_scratch.TestScratchData.test_add_scratch_container_description) ... test_add_scratch_container_name (unit.test_scratch.TestScratchData.test_add_scratch_container_name) ... test_add_scratch_dataframe (unit.test_scratch.TestScratchData.test_add_scratch_dataframe) ... /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) test_add_scratch_dataframe_no_description (unit.test_scratch.TestScratchData.test_add_scratch_dataframe_no_description) ... test_add_scratch_dynamictable (unit.test_scratch.TestScratchData.test_add_scratch_dynamictable) ... test_add_scratch_int (unit.test_scratch.TestScratchData.test_add_scratch_int) ... test_add_scratch_list (unit.test_scratch.TestScratchData.test_add_scratch_list) ... test_add_scratch_list_no_name (unit.test_scratch.TestScratchData.test_add_scratch_list_no_name) ... test_add_scratch_ndarray (unit.test_scratch.TestScratchData.test_add_scratch_ndarray) ... test_add_scratch_ndarray_no_description (unit.test_scratch.TestScratchData.test_add_scratch_ndarray_no_description) ... test_add_scratch_scratchdata (unit.test_scratch.TestScratchData.test_add_scratch_scratchdata) ... test_constructor_list (unit.test_scratch.TestScratchData.test_constructor_list) ... test_get_scratch_df_convert_false (unit.test_scratch.TestScratchData.test_get_scratch_df_convert_false) ... test_get_scratch_list_convert_false (unit.test_scratch.TestScratchData.test_get_scratch_list_convert_false) ... test_constructor (unit.test_spec.NWBNamespaceTest.test_constructor) ... test_constructor (unit.test_spec.NWBRefSpecTests.test_constructor) ... test_wrong_reference_type (unit.test_spec.NWBRefSpecTests.test_wrong_reference_type) ... ---------------------------------------------------------------------- Ran 339 tests in 681.854s OK ====================================================================== 2023-12-19 22:35:31,711 - INFO - running example tests ====================================================================== 2023-12-19 22:35:31,714 - INFO - running integration tests test_roundtrip (integration.hdf5.test_base.TestImagesIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_base.TestImagesIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_base.TestTimeSeriesIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_base.TestTimeSeriesIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_timestamps_linking (integration.hdf5.test_base.TestTimeSeriesLinking.test_timestamps_linking) Test that timestamps get linked to in TimeSeries ... test_roundtrip (integration.hdf5.test_device.TestDeviceIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_device.TestDeviceIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ecephys.ClusterWaveformsConstructor.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ecephys.ClusterWaveformsConstructor.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ecephys.EventDetectionConstructor.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ecephys.EventDetectionConstructor.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ecephys.EventWaveformConstructor.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ecephys.EventWaveformConstructor.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ecephys.FeatureExtractionConstructor.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ecephys.FeatureExtractionConstructor.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ecephys.TestClusteringIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ecephys.TestClusteringIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_eg_ref (integration.hdf5.test_ecephys.TestElectricalSeriesIO.test_eg_ref) Test that the electrode DynamicTableRegion references of the read ElectricalSeries have a group that ... test_roundtrip (integration.hdf5.test_ecephys.TestElectricalSeriesIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ecephys.TestElectricalSeriesIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ecephys.TestElectrodeGroupIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ecephys.TestElectrodeGroupIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ecephys.TestFilteredEphysIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ecephys.TestFilteredEphysIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ecephys.TestLFPIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ecephys.TestLFPIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_icephys.TestCurrentClampSeries.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_icephys.TestCurrentClampSeries.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_icephys.TestCurrentClampStimulusSeries.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_icephys.TestCurrentClampStimulusSeries.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_icephys.TestIZeroClampSeries.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_icephys.TestIZeroClampSeries.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_icephys.TestIntracellularElectrode.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_icephys.TestIntracellularElectrode.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_icephys.TestPatchClampSeries.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_icephys.TestPatchClampSeries.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_container (integration.hdf5.test_icephys.TestSweepTableRoundTripComplicated.test_container) Test properties of the SweepTable read from file ... test_roundtrip (integration.hdf5.test_icephys.TestSweepTableRoundTripComplicated.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_icephys.TestSweepTableRoundTripComplicated.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_container (integration.hdf5.test_icephys.TestSweepTableRoundTripEasy.test_container) Test properties of the SweepTable read from file ... test_roundtrip (integration.hdf5.test_icephys.TestSweepTableRoundTripEasy.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_icephys.TestSweepTableRoundTripEasy.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_icephys.TestVoltageClampSeries.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_icephys.TestVoltageClampSeries.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_icephys.TestVoltageClampStimulusSeries.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_icephys.TestVoltageClampStimulusSeries.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_image.TestImageSeriesIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_image.TestImageSeriesIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_image.TestOpticalSeriesIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_image.TestOpticalSeriesIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_append (integration.hdf5.test_io.TestAppend.test_append) ... test_electrode_id_uniqueness (integration.hdf5.test_io.TestAppend.test_electrode_id_uniqueness) ... test_gzip_timestamps (integration.hdf5.test_io.TestH5DataIO.test_gzip_timestamps) ... test_write_dataset_custom_chunks (integration.hdf5.test_io.TestH5DataIO.test_write_dataset_custom_chunks) ... test_write_dataset_custom_compress (integration.hdf5.test_io.TestH5DataIO.test_write_dataset_custom_compress) ... test_write_dataset_custom_fillvalue (integration.hdf5.test_io.TestH5DataIO.test_write_dataset_custom_fillvalue) ... test_write_dataset_datachunkiterator_data_and_time (integration.hdf5.test_io.TestH5DataIO.test_write_dataset_datachunkiterator_data_and_time) ... test_write_dataset_datachunkiterator_data_only (integration.hdf5.test_io.TestH5DataIO.test_write_dataset_datachunkiterator_data_only) ... test_write_dataset_datachunkiterator_with_compression (integration.hdf5.test_io.TestH5DataIO.test_write_dataset_datachunkiterator_with_compression) ... test_nwbio (integration.hdf5.test_io.TestHDF5Writer.test_nwbio) ... test_write_cache_spec (integration.hdf5.test_io.TestHDF5Writer.test_write_cache_spec) Round-trip test for writing spec and reading it back in ... test_write_clobber (integration.hdf5.test_io.TestHDF5Writer.test_write_clobber) ... test_write_no_cache_spec (integration.hdf5.test_io.TestHDF5Writer.test_write_no_cache_spec) Round-trip test for not writing spec ... test_nwbio (integration.hdf5.test_io.TestHDF5WriterWithInjectedFile.test_nwbio) ... test_write_cache_spec (integration.hdf5.test_io.TestHDF5WriterWithInjectedFile.test_write_cache_spec) Round-trip test for writing spec and reading it back in ... test_write_clobber (integration.hdf5.test_io.TestHDF5WriterWithInjectedFile.test_write_clobber) ... test_check_nwb_version_missing_version (integration.hdf5.test_io.TestNWBHDF5IO.test_check_nwb_version_missing_version) Test reading of files with missing nwb_version ... test_check_nwb_version_ok (integration.hdf5.test_io.TestNWBHDF5IO.test_check_nwb_version_ok) Test that opening a current NWBFile passes the version check ... test_check_nwb_version_old_version (integration.hdf5.test_io.TestNWBHDF5IO.test_check_nwb_version_old_version) Test reading of files with version less than 2 ... test_nwb_version_property (integration.hdf5.test_io.TestNWBHDF5IO.test_nwb_version_property) Test reading of files with missing nwb_version ... test_round_trip_with_path_string (integration.hdf5.test_io.TestNWBHDF5IO.test_round_trip_with_path_string) Opening a NWBHDF5IO with a path string should work correctly ... test_round_trip_with_pathlib_path (integration.hdf5.test_io.TestNWBHDF5IO.test_round_trip_with_pathlib_path) Opening a NWBHDF5IO with a pathlib path should correctly ... test_roundtrip (integration.hdf5.test_misc.TestDecompositionSeriesIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_misc.TestDecompositionSeriesIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_eg_ref (integration.hdf5.test_misc.TestDecompositionSeriesWithSourceChannelsIO.test_eg_ref) Test that the electrode DynamicTableRegion references of the read ElectricalSeries have a group that ... test_roundtrip (integration.hdf5.test_misc.TestDecompositionSeriesWithSourceChannelsIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_misc.TestDecompositionSeriesWithSourceChannelsIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_misc.TestUnitsFileIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_misc.TestUnitsFileIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_to_dataframe (integration.hdf5.test_misc.TestUnitsFileIO.test_to_dataframe) ... test_get_obs_intervals (integration.hdf5.test_misc.TestUnitsIO.test_get_obs_intervals) Test whether the Units observation intervals read from file are what was written ... test_get_spike_times (integration.hdf5.test_misc.TestUnitsIO.test_get_spike_times) Test whether the Units spike times read from file are what was written ... test_roundtrip (integration.hdf5.test_misc.TestUnitsIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_misc.TestUnitsIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_link_root (integration.hdf5.test_modular_storage.TestTimeSeriesModular.test_link_root) ... test_roundtrip (integration.hdf5.test_modular_storage.TestTimeSeriesModular.test_roundtrip) ... test_roundtrip (integration.hdf5.test_nwbfile.TestAddStimulusTemplateImages.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestAddStimulusTemplateImages.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_nwbfile.TestAddStimulusTemplateTimeSeries.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestAddStimulusTemplateTimeSeries.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_nwbfile.TestDynamicTableFromDataframeIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestDynamicTableFromDataframeIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_to_dataframe (integration.hdf5.test_nwbfile.TestDynamicTableFromDataframeIO.test_to_dataframe) ... test_roundtrip (integration.hdf5.test_nwbfile.TestElectrodes.test_roundtrip) ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestElectrodes.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_nwbfile.TestElectrodesOptColumns.test_roundtrip) ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestElectrodesOptColumns.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_nwbfile.TestElectrodesRegion.test_roundtrip) ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestElectrodesRegion.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_nwbfile.TestEmptySubjectIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestEmptySubjectIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_nwbfile.TestEpochsIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestEpochsIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_df_comparison (integration.hdf5.test_nwbfile.TestEpochsIODf.test_df_comparison) Test that the epochs read from file converted to a data frame are the same as the data frame converted ... test_df_comparison_no_ts (integration.hdf5.test_nwbfile.TestEpochsIODf.test_df_comparison_no_ts) Test that the epochs read from file converted to a data frame are the same as the data frame converted ... test_roundtrip (integration.hdf5.test_nwbfile.TestEpochsIODf.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestEpochsIODf.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_nwbfile.TestExperimentersConstructorRoundtrip.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestExperimentersConstructorRoundtrip.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_nwbfile.TestExperimentersSetterRoundtrip.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestExperimentersSetterRoundtrip.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_nwbfile.TestInvalidTimes.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestInvalidTimes.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_children (integration.hdf5.test_nwbfile.TestNWBFileHDF5IO.test_children) Test that the TimeSeries and processing module are children of their respective parents ... test_read (integration.hdf5.test_nwbfile.TestNWBFileHDF5IO.test_read) Test reading the NWBFile using HDF5IO ... test_write (integration.hdf5.test_nwbfile.TestNWBFileHDF5IO.test_write) Test writing the NWBFile using HDF5IO ... test_roundtrip (integration.hdf5.test_nwbfile.TestNWBFileIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestNWBFileIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_nwbfile.TestPublicationsConstructorRoundtrip.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestPublicationsConstructorRoundtrip.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_nwbfile.TestPublicationsSetterRoundtrip.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestPublicationsSetterRoundtrip.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_nwbfile.TestSubjectAgeReferenceNotSetIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestSubjectAgeReferenceNotSetIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_nwbfile.TestSubjectIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestSubjectIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_nwbfile.TestTrials.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestTrials.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_nwbfile.TestUnits.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestUnits.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ogen.TestOptogeneticSeriesIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ogen.TestOptogeneticSeriesIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ogen.TestOptogeneticStimulusSiteIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ogen.TestOptogeneticStimulusSiteIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ophys.MaskIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ophys.MaskIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ophys.TestCorrectedImageStackIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ophys.TestCorrectedImageStackIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ophys.TestImageMaskIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ophys.TestImageMaskIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ophys.TestImagingPlaneIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ophys.TestImagingPlaneIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ophys.TestMotionCorrection.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ophys.TestMotionCorrection.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ophys.TestOnePhotonSeriesIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ophys.TestOnePhotonSeriesIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ophys.TestPixelMaskIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ophys.TestPixelMaskIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ophys.TestPlaneSegmentationIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ophys.TestPlaneSegmentationIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ophys.TestRoiResponseSeriesIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ophys.TestRoiResponseSeriesIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ophys.TestTwoPhotonSeriesIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ophys.TestTwoPhotonSeriesIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_scratch.TestScratchDataIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_scratch.TestScratchDataIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_scratch_container (integration.hdf5.test_scratch.TestScratchDataIO.test_scratch_container) ... test_scratch_convert_DataFrame_table_desc (integration.hdf5.test_scratch.TestScratchDataIO.test_scratch_convert_DataFrame_table_desc) Test round trip convert of DataFrame with a table description ... /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) test_scratch_convert_int (integration.hdf5.test_scratch.TestScratchDataIO.test_scratch_convert_int) ... test_scratch_convert_list (integration.hdf5.test_scratch.TestScratchDataIO.test_scratch_convert_list) ... test_scratch_convert_ndarray (integration.hdf5.test_scratch.TestScratchDataIO.test_scratch_convert_ndarray) ... ---------------------------------------------------------------------- Ran 161 tests in 1396.341s OK ====================================================================== 2023-12-19 22:58:49,016 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/core.py ====================================================================== 2023-12-19 22:58:49,018 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/core.py ====================================================================== 2023-12-19 22:58:49,020 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/core.py ====================================================================== 2023-12-19 22:58:49,020 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/base.py ====================================================================== 2023-12-19 22:58:49,021 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/base.py ====================================================================== 2023-12-19 22:58:49,022 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/base.py ====================================================================== 2023-12-19 22:58:49,023 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/base.py ====================================================================== 2023-12-19 22:58:49,024 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/ecephys.py ====================================================================== 2023-12-19 22:58:49,024 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/icephys.py ====================================================================== 2023-12-19 22:58:49,025 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/icephys.py ====================================================================== 2023-12-19 22:58:49,026 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/icephys.py ====================================================================== 2023-12-19 22:58:49,027 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/icephys.py ====================================================================== 2023-12-19 22:58:49,028 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/icephys.py ====================================================================== 2023-12-19 22:58:49,028 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/icephys.py ====================================================================== 2023-12-19 22:58:49,029 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/icephys.py ====================================================================== 2023-12-19 22:58:49,030 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/icephys.py ====================================================================== 2023-12-19 22:58:49,030 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/image.py ====================================================================== 2023-12-19 22:58:49,031 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/image.py ====================================================================== 2023-12-19 22:58:49,032 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/image.py ====================================================================== 2023-12-19 22:58:49,033 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/image.py ====================================================================== 2023-12-19 22:58:49,034 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/image.py ====================================================================== 2023-12-19 22:58:49,034 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/ophys.py ====================================================================== 2023-12-19 22:58:49,035 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/ophys.py ====================================================================== 2023-12-19 22:58:49,036 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/ophys.py ====================================================================== 2023-12-19 22:58:49,037 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/ophys.py ====================================================================== 2023-12-19 22:58:49,037 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/misc.py ====================================================================== 2023-12-19 22:58:49,038 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/misc.py ====================================================================== 2023-12-19 22:58:49,039 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/misc.py ====================================================================== 2023-12-19 22:58:49,040 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/file.py ====================================================================== 2023-12-19 22:58:49,040 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/behavior.py ====================================================================== 2023-12-19 22:58:49,041 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/behavior.py ====================================================================== 2023-12-19 22:58:49,042 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/behavior.py ====================================================================== 2023-12-19 22:58:49,043 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/behavior.py ====================================================================== 2023-12-19 22:58:49,043 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/behavior.py ====================================================================== 2023-12-19 22:58:49,044 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/behavior.py ====================================================================== 2023-12-19 22:58:49,045 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/behavior.py ====================================================================== 2023-12-19 22:58:49,046 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/behavior.py ====================================================================== 2023-12-19 22:58:49,047 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/lib/python3.12/site-packages/pynwb/retinotopy.py ====================================================================== 2023-12-19 22:58:49,048 - INFO - 38 classes missing integration tests in ui_write ====================================================================== 2023-12-19 22:58:49,048 - INFO - running integration utils tests test_get_nwb_version (integration.utils.test_io_utils.TestGetNWBVersion.test_get_nwb_version) Get the NWB version from a builder. ... test_get_nwb_version_20b (integration.utils.test_io_utils.TestGetNWBVersion.test_get_nwb_version_20b) Get the NWB version from a builder where version == "2.0b". ... test_get_nwb_version_missing (integration.utils.test_io_utils.TestGetNWBVersion.test_get_nwb_version_missing) Get the NWB version from a builder where the root builder does not have an nwb_version attribute. ... test_get_nwb_version_prerelease_false (integration.utils.test_io_utils.TestGetNWBVersion.test_get_nwb_version_prerelease_false) Get the NWB version from a builder. ... test_get_nwb_version_prerelease_true1 (integration.utils.test_io_utils.TestGetNWBVersion.test_get_nwb_version_prerelease_true1) Get the NWB version from a builder. ... test_get_nwb_version_prerelease_true2 (integration.utils.test_io_utils.TestGetNWBVersion.test_get_nwb_version_prerelease_true2) Get the NWB version from a builder. ... ---------------------------------------------------------------------- ====================================================================== 2023-12-19 22:58:49,113 - INFO - running validation tests Ran 6 tests in 0.030s OK test_validate_file_cached (validation.test_validate.TestValidateCLI.test_validate_file_cached) Test that validating a file with cached spec against its cached namespace succeeds. ... skipped 'Re-import issues' test_validate_file_cached_bad_ns (validation.test_validate.TestValidateCLI.test_validate_file_cached_bad_ns) Test that validating a file with cached spec against a specified, unknown namespace fails. ... test_validate_file_cached_core (validation.test_validate.TestValidateCLI.test_validate_file_cached_core) Test that validating a file with cached spec against the core namespace succeeds. ... test_validate_file_cached_extension (validation.test_validate.TestValidateCLI.test_validate_file_cached_extension) Test that validating a file with cached spec against the cached namespaces succeeds. ... skipped 'Re-import issues' test_validate_file_cached_extension_pass_ns (validation.test_validate.TestValidateCLI.test_validate_file_cached_extension_pass_ns) Test that validating a file with cached spec against the extension namespace succeeds. ... skipped 'Re-import issues' test_validate_file_cached_hdmf_common (validation.test_validate.TestValidateCLI.test_validate_file_cached_hdmf_common) Test that validating a file with cached spec against the hdmf-common namespace fails. ... test_validate_file_cached_ignore (validation.test_validate.TestValidateCLI.test_validate_file_cached_ignore) Test that validating a file with cached spec against the core namespace succeeds. ... skipped 'Re-import issues' test_validate_file_invalid (validation.test_validate.TestValidateCLI.test_validate_file_invalid) Test that validating an invalid file outputs errors. ... test_validate_file_list_namespaces_core (validation.test_validate.TestValidateCLI.test_validate_file_list_namespaces_core) Test listing namespaces from a file ... skipped 'Re-import issues' test_validate_file_list_namespaces_extension (validation.test_validate.TestValidateCLI.test_validate_file_list_namespaces_extension) Test listing namespaces from a file with an extension ... skipped 'Re-import issues' test_validate_file_no_cache (validation.test_validate.TestValidateCLI.test_validate_file_no_cache) Test that validating a file with no cached spec against the core namespace succeeds. ... test_validate_file_no_cache_bad_ns (validation.test_validate.TestValidateCLI.test_validate_file_no_cache_bad_ns) Test that validating a file with no cached spec against a specified, unknown namespace fails. ... test_validate_file_cached_core (validation.test_validate.TestValidateFunction.test_validate_file_cached_core) Test that validating a file with cached core spec with verbose=False. ... test_validate_file_cached_extension (validation.test_validate.TestValidateFunction.test_validate_file_cached_extension) Test that validating a file with cached extension spec against the core ... skipped 'Re-import issues' test_validate_file_cached_no_cache_bad_ns (validation.test_validate.TestValidateFunction.test_validate_file_cached_no_cache_bad_ns) Test that validating a file with no cached namespace, a namespace that is not found, and verbose=False. ... test_validate_io_cached (validation.test_validate.TestValidateFunction.test_validate_io_cached) Test that validating a file with cached spec against its cached namespace succeeds. ... test_validate_io_cached_bad_ns (validation.test_validate.TestValidateFunction.test_validate_io_cached_bad_ns) Test that validating a file with cached spec against a specified, unknown namespace fails. ... test_validate_io_cached_core_with_io (validation.test_validate.TestValidateFunction.test_validate_io_cached_core_with_io) For back-compatability, test that validating a file with cached extension spec against the core ... test_validate_io_cached_extension (validation.test_validate.TestValidateFunction.test_validate_io_cached_extension) Test that validating a file with cached spec against its cached namespaces succeeds. ... test_validate_io_cached_extension_pass_ns (validation.test_validate.TestValidateFunction.test_validate_io_cached_extension_pass_ns) Test that validating a file with cached extension spec against the extension namespace succeeds. ... test_validate_io_cached_hdmf_common (validation.test_validate.TestValidateFunction.test_validate_io_cached_hdmf_common) Test that validating a file with cached spec against the hdmf-common namespace fails. ... test_validate_io_no_cache (validation.test_validate.TestValidateFunction.test_validate_io_no_cache) Test that validating a file with no cached spec against the core namespace succeeds. ... test_validate_io_no_cache_bad_ns (validation.test_validate.TestValidateFunction.test_validate_io_no_cache_bad_ns) Test that validating a file with no cached spec against a specified, unknown namespace fails. ... ---------------------------------------------------------------------- Ran 23 tests in 417.402s OK (skipped=7) ====================================================================== 2023-12-19 23:05:46,906 - INFO - running pynwb backwards compatibility tests test_outer_import_structure (back_compat.test_import_structure.TestImportStructure.test_outer_import_structure) ... test_read (back_compat.test_read.TestReadOldVersions.test_read) Test reading and validating all NWB files in the same folder as this file. ... test_read_imageseries_no_data (back_compat.test_read.TestReadOldVersions.test_read_imageseries_no_data) Test that an ImageSeries written without data is read with data set to the default value. ... test_read_imageseries_no_unit (back_compat.test_read.TestReadOldVersions.test_read_imageseries_no_unit) Test that an ImageSeries written without unit is read with unit set to the default value. ... test_read_imageseries_non_external_format (back_compat.test_read.TestReadOldVersions.test_read_imageseries_non_external_format) Test that reading an ImageSeries with an inconsistent format does not change the value. ... test_read_imageseries_nonmatch_starting_frame (back_compat.test_read.TestReadOldVersions.test_read_imageseries_nonmatch_starting_frame) Test that reading an ImageSeries with an inconsistent starting_frame does not change the value. ... test_read_subject_no_age__reference (back_compat.test_read.TestReadOldVersions.test_read_subject_no_age__reference) Test that reading a Subject without an age__reference set with NWB schema 2.5.0 sets the value to None ... test_read_timeseries_no_data (back_compat.test_read.TestReadOldVersions.test_read_timeseries_no_data) Test that a TimeSeries written without data is read with data set to the default value. ... test_read_timeseries_no_unit (back_compat.test_read.TestReadOldVersions.test_read_timeseries_no_unit) Test that an ImageSeries written without unit is read with unit set to the default value. ... ---------------------------------------------------------------------- Ran 9 tests in 94.762s OK ====================================================================== 2023-12-19 23:07:21,780 - INFO - Ran 538 tests - OK + RPM_EC=0 ++ jobs -p + exit 0 Processing files: python3-pynwb-2.5.0-1.fc40.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.XS3VEY + umask 022 + cd /builddir/build/BUILD + cd pynwb-2.5.0 + DOCDIR=/builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/share/doc/python3-pynwb + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/share/doc/python3-pynwb + cp -pr /builddir/build/BUILD/pynwb-2.5.0/README.rst /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/share/doc/python3-pynwb + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.XJaNs6 + umask 022 + cd /builddir/build/BUILD + cd pynwb-2.5.0 + LICENSEDIR=/builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/share/licenses/python3-pynwb + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/share/licenses/python3-pynwb + cp -pr /builddir/build/BUILD/pynwb-2.5.0/license.txt /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch/usr/share/licenses/python3-pynwb + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-pynwb = 2.5.0-1.fc40 python3-pynwb = 2.5.0-1.fc40 python3.12-pynwb = 2.5.0-1.fc40 python3.12dist(pynwb) = 2.5 python3dist(pynwb) = 2.5 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.12 python3.12dist(h5py) >= 2.10 python3.12dist(hdmf) >= 3.9 python3.12dist(numpy) >= 1.16 python3.12dist(pandas) >= 1.1.5 python3.12dist(python-dateutil) >= 2.7.3 python3.12dist(setuptools) Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-pynwb-2.5.0-1.fc40.noarch Wrote: /builddir/build/SRPMS/python-pynwb-2.5.0-1.fc40.src.rpm Wrote: /builddir/build/RPMS/python3-pynwb-2.5.0-1.fc40.noarch.rpm Child return code was: 0