Mock Version: 5.0
Mock Version: 5.0
Mock Version: 5.0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target noarch --nodeps /builddir/build/SPECS/python-hdmf.spec'], chrootPath='/var/lib/mock/f39-build-2069785-49305/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffffffa0dbf890>timeout=864000uid=996gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target noarch --nodeps /builddir/build/SPECS/python-hdmf.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False
Building target platforms: noarch
Building for target noarch
setting SOURCE_DATE_EPOCH=1702857600
Wrote: /builddir/build/SRPMS/python-hdmf-3.11.0-1.fc39.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target noarch --nodeps /builddir/build/SPECS/python-hdmf.spec'], chrootPath='/var/lib/mock/f39-build-2069785-49305/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffffffa0dbf890>timeout=864000uid=996gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueraiseExc=FalseprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target noarch --nodeps /builddir/build/SPECS/python-hdmf.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False
Building target platforms: noarch
Building for target noarch
setting SOURCE_DATE_EPOCH=1702857600
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Qp8OU2
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf hdmf-3.11.0
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/hdmf-3.11.0.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd hdmf-3.11.0
+ rm -rf /builddir/build/BUILD/hdmf-3.11.0-SPECPARTS
+ /usr/bin/mkdir -p /builddir/build/BUILD/hdmf-3.11.0-SPECPARTS
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-Patch-out-coverage-from-pytest-invocation.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ rm -vrf src/hdmf/common/hdmf-common-schema/
removed 'src/hdmf/common/hdmf-common-schema/requirements-doc.txt'
removed 'src/hdmf/common/hdmf-common-schema/README.md'
removed 'src/hdmf/common/hdmf-common-schema/license.txt'
removed 'src/hdmf/common/hdmf-common-schema/.git'
removed 'src/hdmf/common/hdmf-common-schema/.codespellrc'
removed 'src/hdmf/common/hdmf-common-schema/setup.cfg'
removed 'src/hdmf/common/hdmf-common-schema/docs/make.bat'
removed 'src/hdmf/common/hdmf-common-schema/docs/Makefile'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/hdmf_experimental_release_notes.rst'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/format.rst'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/conf_doc_autogen.py'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/index.rst'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/figures/ragged-array-goal.png'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/figures/ragged-array.png'
removed directory 'src/hdmf/common/hdmf-common-schema/docs/source/figures'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/hdmf_common_release_notes.rst'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/credits.rst'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/format_description.rst'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/_static/theme_overrides.css'
removed directory 'src/hdmf/common/hdmf-common-schema/docs/source/_static'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/conf.py'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/software_process.rst'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/format_release_notes.rst'
removed directory 'src/hdmf/common/hdmf-common-schema/docs/source'
removed 'src/hdmf/common/hdmf-common-schema/docs/Readme.md'
removed directory 'src/hdmf/common/hdmf-common-schema/docs'
removed 'src/hdmf/common/hdmf-common-schema/Legal.txt'
removed 'src/hdmf/common/hdmf-common-schema/.gitignore'
removed 'src/hdmf/common/hdmf-common-schema/.github/PULL_REQUEST_TEMPLATE.md'
removed 'src/hdmf/common/hdmf-common-schema/.github/PULL_REQUEST_TEMPLATE/release.md'
removed directory 'src/hdmf/common/hdmf-common-schema/.github/PULL_REQUEST_TEMPLATE'
removed 'src/hdmf/common/hdmf-common-schema/.github/workflows/codespell.yml'
removed 'src/hdmf/common/hdmf-common-schema/.github/workflows/project_action.yml'
removed directory 'src/hdmf/common/hdmf-common-schema/.github/workflows'
removed directory 'src/hdmf/common/hdmf-common-schema/.github'
removed 'src/hdmf/common/hdmf-common-schema/common/sparse.yaml'
removed 'src/hdmf/common/hdmf-common-schema/common/namespace.yaml'
removed 'src/hdmf/common/hdmf-common-schema/common/table.yaml'
removed 'src/hdmf/common/hdmf-common-schema/common/resources.yaml'
removed 'src/hdmf/common/hdmf-common-schema/common/base.yaml'
removed 'src/hdmf/common/hdmf-common-schema/common/experimental.yaml'
removed directory 'src/hdmf/common/hdmf-common-schema/common'
removed directory 'src/hdmf/common/hdmf-common-schema/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.JDNUSE
+ umask 022
+ cd /builddir/build/BUILD
+ cd hdmf-3.11.0
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/hdmf-3.11.0/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ TMPDIR=/builddir/build/BUILD/hdmf-3.11.0/.pyproject-builddir
+ RPM_TOXENV=py312
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/hdmf-3.11.0/pyproject-wheeldir --output /builddir/build/BUILD/python-hdmf-3.11.0-1.fc39.noarch-pyproject-buildrequires -x zarr,tqdm
Handling hatchling from build-system.requires
Requirement not satisfied: hatchling
Handling hatch-vcs from build-system.requires
Requirement not satisfied: hatch-vcs
Exiting dependency generation pass: build backend
+ cat /builddir/build/BUILD/python-hdmf-3.11.0-1.fc39.noarch-pyproject-buildrequires
+ rm -rfv '*.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/python-hdmf-3.11.0-1.fc39.buildreqs.nosrc.rpm
Child return code was: 11
Dynamic buildrequires detected
Going to install missing buildrequires. See root.log for details.
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target noarch --nodeps /builddir/build/SPECS/python-hdmf.spec'], chrootPath='/var/lib/mock/f39-build-2069785-49305/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffffffa0dbf890>timeout=864000uid=996gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueraiseExc=FalseprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target noarch --nodeps /builddir/build/SPECS/python-hdmf.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False
Building target platforms: noarch
Building for target noarch
setting SOURCE_DATE_EPOCH=1702857600
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.RHJp29
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf hdmf-3.11.0
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/hdmf-3.11.0.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd hdmf-3.11.0
+ rm -rf /builddir/build/BUILD/hdmf-3.11.0-SPECPARTS
+ /usr/bin/mkdir -p /builddir/build/BUILD/hdmf-3.11.0-SPECPARTS
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-Patch-out-coverage-from-pytest-invocation.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ rm -vrf src/hdmf/common/hdmf-common-schema/
removed 'src/hdmf/common/hdmf-common-schema/requirements-doc.txt'
removed 'src/hdmf/common/hdmf-common-schema/README.md'
removed 'src/hdmf/common/hdmf-common-schema/license.txt'
removed 'src/hdmf/common/hdmf-common-schema/.git'
removed 'src/hdmf/common/hdmf-common-schema/.codespellrc'
removed 'src/hdmf/common/hdmf-common-schema/setup.cfg'
removed 'src/hdmf/common/hdmf-common-schema/docs/make.bat'
removed 'src/hdmf/common/hdmf-common-schema/docs/Makefile'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/hdmf_experimental_release_notes.rst'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/format.rst'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/conf_doc_autogen.py'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/index.rst'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/figures/ragged-array-goal.png'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/figures/ragged-array.png'
removed directory 'src/hdmf/common/hdmf-common-schema/docs/source/figures'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/hdmf_common_release_notes.rst'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/credits.rst'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/format_description.rst'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/_static/theme_overrides.css'
removed directory 'src/hdmf/common/hdmf-common-schema/docs/source/_static'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/conf.py'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/software_process.rst'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/format_release_notes.rst'
removed directory 'src/hdmf/common/hdmf-common-schema/docs/source'
removed 'src/hdmf/common/hdmf-common-schema/docs/Readme.md'
removed directory 'src/hdmf/common/hdmf-common-schema/docs'
removed 'src/hdmf/common/hdmf-common-schema/Legal.txt'
removed 'src/hdmf/common/hdmf-common-schema/.gitignore'
removed 'src/hdmf/common/hdmf-common-schema/.github/PULL_REQUEST_TEMPLATE.md'
removed 'src/hdmf/common/hdmf-common-schema/.github/PULL_REQUEST_TEMPLATE/release.md'
removed directory 'src/hdmf/common/hdmf-common-schema/.github/PULL_REQUEST_TEMPLATE'
removed 'src/hdmf/common/hdmf-common-schema/.github/workflows/codespell.yml'
removed 'src/hdmf/common/hdmf-common-schema/.github/workflows/project_action.yml'
removed directory 'src/hdmf/common/hdmf-common-schema/.github/workflows'
removed directory 'src/hdmf/common/hdmf-common-schema/.github'
removed 'src/hdmf/common/hdmf-common-schema/common/sparse.yaml'
removed 'src/hdmf/common/hdmf-common-schema/common/namespace.yaml'
removed 'src/hdmf/common/hdmf-common-schema/common/table.yaml'
removed 'src/hdmf/common/hdmf-common-schema/common/resources.yaml'
removed 'src/hdmf/common/hdmf-common-schema/common/base.yaml'
removed 'src/hdmf/common/hdmf-common-schema/common/experimental.yaml'
removed directory 'src/hdmf/common/hdmf-common-schema/common'
removed directory 'src/hdmf/common/hdmf-common-schema/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.eq8hPI
+ umask 022
+ cd /builddir/build/BUILD
+ cd hdmf-3.11.0
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/hdmf-3.11.0/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ TMPDIR=/builddir/build/BUILD/hdmf-3.11.0/.pyproject-builddir
+ RPM_TOXENV=py312
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/hdmf-3.11.0/pyproject-wheeldir --output /builddir/build/BUILD/python-hdmf-3.11.0-1.fc39.noarch-pyproject-buildrequires -x zarr,tqdm
Handling hatchling from build-system.requires
Requirement satisfied: hatchling
   (installed: hatchling 1.20.0)
Handling hatch-vcs from build-system.requires
Requirement satisfied: hatch-vcs
   (installed: hatch-vcs 0.4.0)
Handling h5py>=2.10 from hook generated metadata: Requires-Dist (hdmf)
Requirement not satisfied: h5py>=2.10
Handling importlib-resources; python_version < '3.9' from hook generated metadata: Requires-Dist (hdmf)
Ignoring alien requirement: importlib-resources; python_version < '3.9'
Handling jsonschema>=2.6.0 from hook generated metadata: Requires-Dist (hdmf)
Requirement not satisfied: jsonschema>=2.6.0
Handling numpy>=1.18 from hook generated metadata: Requires-Dist (hdmf)
Requirement not satisfied: numpy>=1.18
Handling pandas>=1.0.5 from hook generated metadata: Requires-Dist (hdmf)
Requirement not satisfied: pandas>=1.0.5
Handling ruamel-yaml>=0.16 from hook generated metadata: Requires-Dist (hdmf)
Requirement not satisfied: ruamel-yaml>=0.16
Handling scipy>=1.4 from hook generated metadata: Requires-Dist (hdmf)
Requirement not satisfied: scipy>=1.4
Handling linkml-runtime>=1.5.5; (python_version >= '3.9') and extra == 'termset' from hook generated metadata: Requires-Dist (hdmf)
Ignoring alien requirement: linkml-runtime>=1.5.5; (python_version >= '3.9') and extra == 'termset'
Handling oaklib>=0.5.12; (python_version >= '3.9') and extra == 'termset' from hook generated metadata: Requires-Dist (hdmf)
Ignoring alien requirement: oaklib>=0.5.12; (python_version >= '3.9') and extra == 'termset'
Handling pyyaml>=6.0.1; (python_version >= '3.9') and extra == 'termset' from hook generated metadata: Requires-Dist (hdmf)
Ignoring alien requirement: pyyaml>=6.0.1; (python_version >= '3.9') and extra == 'termset'
Handling schemasheets>=0.1.23; (python_version >= '3.9') and extra == 'termset' from hook generated metadata: Requires-Dist (hdmf)
Ignoring alien requirement: schemasheets>=0.1.23; (python_version >= '3.9') and extra == 'termset'
Handling tqdm>=4.41.0; extra == 'tqdm' from hook generated metadata: Requires-Dist (hdmf)
Requirement satisfied: tqdm>=4.41.0; extra == 'tqdm'
   (installed: tqdm 4.66.1)
Handling zarr>=2.12.0; extra == 'zarr' from hook generated metadata: Requires-Dist (hdmf)
Requirement not satisfied: zarr>=2.12.0; extra == 'zarr'
+ cat /builddir/build/BUILD/python-hdmf-3.11.0-1.fc39.noarch-pyproject-buildrequires
+ rm -rfv hdmf-3.11.0.dist-info/
removed 'hdmf-3.11.0.dist-info/METADATA'
removed directory 'hdmf-3.11.0.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/python-hdmf-3.11.0-1.fc39.buildreqs.nosrc.rpm
Child return code was: 11
Dynamic buildrequires detected
Going to install missing buildrequires. See root.log for details.
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target noarch --nodeps /builddir/build/SPECS/python-hdmf.spec'], chrootPath='/var/lib/mock/f39-build-2069785-49305/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffffffa0dbf890>timeout=864000uid=996gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueraiseExc=FalseprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target noarch --nodeps /builddir/build/SPECS/python-hdmf.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False
Building target platforms: noarch
Building for target noarch
setting SOURCE_DATE_EPOCH=1702857600
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.uN3Zsw
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf hdmf-3.11.0
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/hdmf-3.11.0.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd hdmf-3.11.0
+ rm -rf /builddir/build/BUILD/hdmf-3.11.0-SPECPARTS
+ /usr/bin/mkdir -p /builddir/build/BUILD/hdmf-3.11.0-SPECPARTS
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-Patch-out-coverage-from-pytest-invocation.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ rm -vrf src/hdmf/common/hdmf-common-schema/
removed 'src/hdmf/common/hdmf-common-schema/requirements-doc.txt'
removed 'src/hdmf/common/hdmf-common-schema/README.md'
removed 'src/hdmf/common/hdmf-common-schema/license.txt'
removed 'src/hdmf/common/hdmf-common-schema/.git'
removed 'src/hdmf/common/hdmf-common-schema/.codespellrc'
removed 'src/hdmf/common/hdmf-common-schema/setup.cfg'
removed 'src/hdmf/common/hdmf-common-schema/docs/make.bat'
removed 'src/hdmf/common/hdmf-common-schema/docs/Makefile'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/hdmf_experimental_release_notes.rst'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/format.rst'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/conf_doc_autogen.py'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/index.rst'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/figures/ragged-array-goal.png'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/figures/ragged-array.png'
removed directory 'src/hdmf/common/hdmf-common-schema/docs/source/figures'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/hdmf_common_release_notes.rst'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/credits.rst'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/format_description.rst'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/_static/theme_overrides.css'
removed directory 'src/hdmf/common/hdmf-common-schema/docs/source/_static'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/conf.py'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/software_process.rst'
removed 'src/hdmf/common/hdmf-common-schema/docs/source/format_release_notes.rst'
removed directory 'src/hdmf/common/hdmf-common-schema/docs/source'
removed 'src/hdmf/common/hdmf-common-schema/docs/Readme.md'
removed directory 'src/hdmf/common/hdmf-common-schema/docs'
removed 'src/hdmf/common/hdmf-common-schema/Legal.txt'
removed 'src/hdmf/common/hdmf-common-schema/.gitignore'
removed 'src/hdmf/common/hdmf-common-schema/.github/PULL_REQUEST_TEMPLATE.md'
removed 'src/hdmf/common/hdmf-common-schema/.github/PULL_REQUEST_TEMPLATE/release.md'
removed directory 'src/hdmf/common/hdmf-common-schema/.github/PULL_REQUEST_TEMPLATE'
removed 'src/hdmf/common/hdmf-common-schema/.github/workflows/codespell.yml'
removed 'src/hdmf/common/hdmf-common-schema/.github/workflows/project_action.yml'
removed directory 'src/hdmf/common/hdmf-common-schema/.github/workflows'
removed directory 'src/hdmf/common/hdmf-common-schema/.github'
removed 'src/hdmf/common/hdmf-common-schema/common/sparse.yaml'
removed 'src/hdmf/common/hdmf-common-schema/common/namespace.yaml'
removed 'src/hdmf/common/hdmf-common-schema/common/table.yaml'
removed 'src/hdmf/common/hdmf-common-schema/common/resources.yaml'
removed 'src/hdmf/common/hdmf-common-schema/common/base.yaml'
removed 'src/hdmf/common/hdmf-common-schema/common/experimental.yaml'
removed directory 'src/hdmf/common/hdmf-common-schema/common'
removed directory 'src/hdmf/common/hdmf-common-schema/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.9UU2Gd
+ umask 022
+ cd /builddir/build/BUILD
+ cd hdmf-3.11.0
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/hdmf-3.11.0/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ TMPDIR=/builddir/build/BUILD/hdmf-3.11.0/.pyproject-builddir
+ RPM_TOXENV=py312
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/hdmf-3.11.0/pyproject-wheeldir --output /builddir/build/BUILD/python-hdmf-3.11.0-1.fc39.noarch-pyproject-buildrequires -x zarr,tqdm
Handling hatchling from build-system.requires
Requirement satisfied: hatchling
   (installed: hatchling 1.20.0)
Handling hatch-vcs from build-system.requires
Requirement satisfied: hatch-vcs
   (installed: hatch-vcs 0.4.0)
Handling h5py>=2.10 from hook generated metadata: Requires-Dist (hdmf)
Requirement satisfied: h5py>=2.10
   (installed: h5py 3.10.0)
Handling importlib-resources; python_version < '3.9' from hook generated metadata: Requires-Dist (hdmf)
Ignoring alien requirement: importlib-resources; python_version < '3.9'
Handling jsonschema>=2.6.0 from hook generated metadata: Requires-Dist (hdmf)
Requirement satisfied: jsonschema>=2.6.0
   (installed: jsonschema 4.19.1)
Handling numpy>=1.18 from hook generated metadata: Requires-Dist (hdmf)
Requirement satisfied: numpy>=1.18
   (installed: numpy 1.26.0)
Handling pandas>=1.0.5 from hook generated metadata: Requires-Dist (hdmf)
Requirement satisfied: pandas>=1.0.5
   (installed: pandas 1.5.3)
Handling ruamel-yaml>=0.16 from hook generated metadata: Requires-Dist (hdmf)
Requirement satisfied: ruamel-yaml>=0.16
   (installed: ruamel-yaml 0.18.2)
Handling scipy>=1.4 from hook generated metadata: Requires-Dist (hdmf)
Requirement satisfied: scipy>=1.4
   (installed: scipy 1.11.3)
Handling linkml-runtime>=1.5.5; (python_version >= '3.9') and extra == 'termset' from hook generated metadata: Requires-Dist (hdmf)
Ignoring alien requirement: linkml-runtime>=1.5.5; (python_version >= '3.9') and extra == 'termset'
Handling oaklib>=0.5.12; (python_version >= '3.9') and extra == 'termset' from hook generated metadata: Requires-Dist (hdmf)
Ignoring alien requirement: oaklib>=0.5.12; (python_version >= '3.9') and extra == 'termset'
Handling pyyaml>=6.0.1; (python_version >= '3.9') and extra == 'termset' from hook generated metadata: Requires-Dist (hdmf)
Ignoring alien requirement: pyyaml>=6.0.1; (python_version >= '3.9') and extra == 'termset'
Handling schemasheets>=0.1.23; (python_version >= '3.9') and extra == 'termset' from hook generated metadata: Requires-Dist (hdmf)
Ignoring alien requirement: schemasheets>=0.1.23; (python_version >= '3.9') and extra == 'termset'
Handling tqdm>=4.41.0; extra == 'tqdm' from hook generated metadata: Requires-Dist (hdmf)
Requirement satisfied: tqdm>=4.41.0; extra == 'tqdm'
   (installed: tqdm 4.66.1)
Handling zarr>=2.12.0; extra == 'zarr' from hook generated metadata: Requires-Dist (hdmf)
Requirement satisfied: zarr>=2.12.0; extra == 'zarr'
   (installed: zarr 2.16.1)
+ cat /builddir/build/BUILD/python-hdmf-3.11.0-1.fc39.noarch-pyproject-buildrequires
+ rm -rfv hdmf-3.11.0.dist-info/
removed 'hdmf-3.11.0.dist-info/METADATA'
removed directory 'hdmf-3.11.0.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/python-hdmf-3.11.0-1.fc39.buildreqs.nosrc.rpm
Child return code was: 11
Dynamic buildrequires detected
Going to install missing buildrequires. See root.log for details.
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --noclean --target noarch --nodeps /builddir/build/SPECS/python-hdmf.spec'], chrootPath='/var/lib/mock/f39-build-2069785-49305/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffffffa0dbf890>timeout=864000uid=996gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --noclean --target noarch --nodeps /builddir/build/SPECS/python-hdmf.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False
Building target platforms: noarch
Building for target noarch
setting SOURCE_DATE_EPOCH=1702857600
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.0UGVDS
+ umask 022
+ cd /builddir/build/BUILD
+ cd hdmf-3.11.0
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/hdmf-3.11.0/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ TMPDIR=/builddir/build/BUILD/hdmf-3.11.0/.pyproject-builddir
+ RPM_TOXENV=py312
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/hdmf-3.11.0/pyproject-wheeldir --output /builddir/build/BUILD/python-hdmf-3.11.0-1.fc39.noarch-pyproject-buildrequires -x zarr,tqdm
Handling hatchling from build-system.requires
Requirement satisfied: hatchling
   (installed: hatchling 1.20.0)
Handling hatch-vcs from build-system.requires
Requirement satisfied: hatch-vcs
   (installed: hatch-vcs 0.4.0)
Handling h5py>=2.10 from hook generated metadata: Requires-Dist (hdmf)
Requirement satisfied: h5py>=2.10
   (installed: h5py 3.10.0)
Handling importlib-resources; python_version < '3.9' from hook generated metadata: Requires-Dist (hdmf)
Ignoring alien requirement: importlib-resources; python_version < '3.9'
Handling jsonschema>=2.6.0 from hook generated metadata: Requires-Dist (hdmf)
Requirement satisfied: jsonschema>=2.6.0
   (installed: jsonschema 4.19.1)
Handling numpy>=1.18 from hook generated metadata: Requires-Dist (hdmf)
Requirement satisfied: numpy>=1.18
   (installed: numpy 1.26.0)
Handling pandas>=1.0.5 from hook generated metadata: Requires-Dist (hdmf)
Requirement satisfied: pandas>=1.0.5
   (installed: pandas 1.5.3)
Handling ruamel-yaml>=0.16 from hook generated metadata: Requires-Dist (hdmf)
Requirement satisfied: ruamel-yaml>=0.16
   (installed: ruamel-yaml 0.18.2)
Handling scipy>=1.4 from hook generated metadata: Requires-Dist (hdmf)
Requirement satisfied: scipy>=1.4
   (installed: scipy 1.11.3)
Handling linkml-runtime>=1.5.5; (python_version >= '3.9') and extra == 'termset' from hook generated metadata: Requires-Dist (hdmf)
Ignoring alien requirement: linkml-runtime>=1.5.5; (python_version >= '3.9') and extra == 'termset'
Handling oaklib>=0.5.12; (python_version >= '3.9') and extra == 'termset' from hook generated metadata: Requires-Dist (hdmf)
Ignoring alien requirement: oaklib>=0.5.12; (python_version >= '3.9') and extra == 'termset'
Handling pyyaml>=6.0.1; (python_version >= '3.9') and extra == 'termset' from hook generated metadata: Requires-Dist (hdmf)
Ignoring alien requirement: pyyaml>=6.0.1; (python_version >= '3.9') and extra == 'termset'
Handling schemasheets>=0.1.23; (python_version >= '3.9') and extra == 'termset' from hook generated metadata: Requires-Dist (hdmf)
Ignoring alien requirement: schemasheets>=0.1.23; (python_version >= '3.9') and extra == 'termset'
Handling tqdm>=4.41.0; extra == 'tqdm' from hook generated metadata: Requires-Dist (hdmf)
Requirement satisfied: tqdm>=4.41.0; extra == 'tqdm'
   (installed: tqdm 4.66.1)
Handling zarr>=2.12.0; extra == 'zarr' from hook generated metadata: Requires-Dist (hdmf)
Requirement satisfied: zarr>=2.12.0; extra == 'zarr'
   (installed: zarr 2.16.1)
+ cat /builddir/build/BUILD/python-hdmf-3.11.0-1.fc39.noarch-pyproject-buildrequires
+ rm -rfv hdmf-3.11.0.dist-info/
removed 'hdmf-3.11.0.dist-info/METADATA'
removed directory 'hdmf-3.11.0.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.5abWlR
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd hdmf-3.11.0
+ mkdir -p /builddir/build/BUILD/hdmf-3.11.0/.pyproject-builddir
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ TMPDIR=/builddir/build/BUILD/hdmf-3.11.0/.pyproject-builddir
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/hdmf-3.11.0/pyproject-wheeldir
Processing /builddir/build/BUILD/hdmf-3.11.0
  Preparing metadata (pyproject.toml): started
  Running command Preparing metadata (pyproject.toml)
  Preparing metadata (pyproject.toml): finished with status 'done'
Building wheels for collected packages: hdmf
  Building wheel for hdmf (pyproject.toml): started
  Running command Building wheel for hdmf (pyproject.toml)
  Building wheel for hdmf (pyproject.toml): finished with status 'done'
  Created wheel for hdmf: filename=hdmf-3.11.0-py3-none-any.whl size=192936 sha256=1aab3c9dd78d4579c91da68e463b51b6c51f72eddb334efa450cfa35d8690ddf
  Stored in directory: /builddir/.cache/pip/wheels/fc/63/9d/06dd227f9be05a4f7598c1634a586816c7807ce2610a18307f
Successfully built hdmf
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.cBi1uD
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch
++ dirname /builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd hdmf-3.11.0
++ xargs basename --multiple
++ ls /builddir/build/BUILD/hdmf-3.11.0/pyproject-wheeldir/hdmf-3.11.0-py3-none-any.whl
++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/'
+ specifier=hdmf==3.11.0
+ '[' -z hdmf==3.11.0 ']'
+ TMPDIR=/builddir/build/BUILD/hdmf-3.11.0/.pyproject-builddir
+ /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/hdmf-3.11.0/pyproject-wheeldir hdmf==3.11.0
Using pip 23.2.1 from /usr/lib/python3.12/site-packages/pip (python 3.12)
Looking in links: /builddir/build/BUILD/hdmf-3.11.0/pyproject-wheeldir
Processing ./pyproject-wheeldir/hdmf-3.11.0-py3-none-any.whl
Installing collected packages: hdmf
  Creating /builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch/usr/bin
  changing mode of /builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch/usr/bin/validate_hdmf_spec to 755
Successfully installed hdmf-3.11.0
+ '[' -d /builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch/usr/bin ']'
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP /builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch/usr/bin/validate_hdmf_spec
/builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch/usr/bin/validate_hdmf_spec: updating
+ rm -rfv /builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch/usr/bin/__pycache__
+ rm -f /builddir/build/BUILD/python-hdmf-3.11.0-1.fc39.noarch-pyproject-ghost-distinfo
+ site_dirs=()
+ '[' -d /builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch/usr/lib/python3.12/site-packages ']'
+ site_dirs+=("/usr/lib/python3.12/site-packages")
+ '[' /builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch/usr/lib64/python3.12/site-packages '!=' /builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch/usr/lib/python3.12/site-packages ']'
+ '[' -d /builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch/usr/lib64/python3.12/site-packages ']'
+ for site_dir in ${site_dirs[@]}
+ for distinfo in /builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch$site_dir/*.dist-info
+ echo '%ghost /usr/lib/python3.12/site-packages/hdmf-3.11.0.dist-info'
+ sed -i s/pip/rpm/ /builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch/usr/lib/python3.12/site-packages/hdmf-3.11.0.dist-info/INSTALLER
+ PYTHONPATH=/usr/lib/rpm/redhat
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch --record /builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch/usr/lib/python3.12/site-packages/hdmf-3.11.0.dist-info/RECORD --output /builddir/build/BUILD/python-hdmf-3.11.0-1.fc39.noarch-pyproject-record
+ rm -fv /builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch/usr/lib/python3.12/site-packages/hdmf-3.11.0.dist-info/RECORD
removed '/builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch/usr/lib/python3.12/site-packages/hdmf-3.11.0.dist-info/RECORD'
+ rm -fv /builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch/usr/lib/python3.12/site-packages/hdmf-3.11.0.dist-info/REQUESTED
removed '/builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch/usr/lib/python3.12/site-packages/hdmf-3.11.0.dist-info/REQUESTED'
++ wc -l /builddir/build/BUILD/python-hdmf-3.11.0-1.fc39.noarch-pyproject-ghost-distinfo
++ cut -f1 '-d '
+ lines=1
+ '[' 1 -ne 1 ']'
+ RPM_PERCENTAGES_COUNT=2
+ /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-hdmf-3.11.0-1.fc39.noarch-pyproject-files --output-modules /builddir/build/BUILD/python-hdmf-3.11.0-1.fc39.noarch-pyproject-modules --buildroot /builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch --sitelib /usr/lib/python3.12/site-packages --sitearch /usr/lib64/python3.12/site-packages --python-version 3.12 --pyproject-record /builddir/build/BUILD/python-hdmf-3.11.0-1.fc39.noarch-pyproject-record --prefix /usr hdmf
+ ln -s /usr/share/hdmf-common-schema/ /builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch/usr/lib/python3.12/site-packages/hdmf/common/hdmf-common-schema
+ install -t /builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch/usr/share/man/man1 -D -p -m 0644 /builddir/build/SOURCES/validate_hdmf_spec.1
+ /usr/bin/find-debuginfo -j8 --strict-build-id -m -i --build-id-seed 3.11.0-1.fc39 --unique-debug-suffix -3.11.0-1.fc39.noarch --unique-debug-src-base python-hdmf-3.11.0-1.fc39.noarch --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/hdmf-3.11.0
find-debuginfo: starting
Extracting debug info from 0 files
Creating .debug symlinks for symlinks to ELF files
find: ‘debug’: No such file or directory
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
*** WARNING: ./usr/lib/python3.12/site-packages/hdmf/testing/validate_spec.py is executable but has no shebang, removing executable bit
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j8
Bytecompiling .py files below /builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch/usr/lib/python3.12 using python3.12
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.hxdyZ3
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd hdmf-3.11.0
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ PATH=/builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
+ PYTHONPATH=/builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch/usr/lib/python3.12/site-packages
+ PYTHONDONTWRITEBYTECODE=1
+ PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/hdmf-3.11.0/.pyproject-builddir'
+ PYTEST_XDIST_AUTO_NUM_WORKERS=8
+ /usr/bin/pytest
============================= test session starts ==============================
platform linux -- Python 3.12.0, pytest-7.3.2, pluggy-1.2.0
rootdir: /builddir/build/BUILD/hdmf-3.11.0
configfile: pyproject.toml
collected 1475 items
tests/unit/test_container.py ........................................... [  2%]
............                                                             [  3%]
tests/unit/test_io_hdf5.py ......                                        [  4%]
tests/unit/test_io_hdf5_h5tools.py .......................s............. [  6%]
.........ss...............sss........................................... [ 11%]
...................................................................      [ 16%]
tests/unit/test_io_hdf5_streaming.py s                                   [ 16%]
tests/unit/test_multicontainerinterface.py ............................. [ 18%]
.................                                                        [ 19%]
tests/unit/test_query.py ..................                              [ 20%]
tests/unit/test_table.py ..........                                      [ 21%]
tests/unit/test_term_set.py ssssssssssssssssssssssss                     [ 22%]
tests/unit/back_compat_tests/test_1_1_0.py ..                            [ 22%]
tests/unit/build_tests/test_builder.py ................................. [ 25%]
...................                                                      [ 26%]
tests/unit/build_tests/test_classgenerator.py .......................... [ 28%]
.......................                                                  [ 29%]
tests/unit/build_tests/test_convert_dtype.py .....................       [ 31%]
tests/unit/build_tests/test_io_manager.py ................               [ 32%]
tests/unit/build_tests/test_io_map.py ............................x..... [ 34%]
..............                                                           [ 35%]
tests/unit/build_tests/test_io_map_data.py .............                 [ 36%]
tests/unit/build_tests/mapper_tests/test_build.py ......                 [ 36%]
tests/unit/build_tests/mapper_tests/test_build_datetime.py ....          [ 37%]
tests/unit/build_tests/mapper_tests/test_build_quantity.py ............. [ 37%]
....................................................                     [ 41%]
tests/unit/common/test_alignedtable.py ..........................        [ 43%]
tests/unit/common/test_common.py .                                       [ 43%]
tests/unit/common/test_common_io.py .....                                [ 43%]
tests/unit/common/test_generate_table.py ..........                      [ 44%]
tests/unit/common/test_linkedtables.py ...........................       [ 46%]
tests/unit/common/test_multi.py ..                                       [ 46%]
tests/unit/common/test_resources.py ..........ss......s................. [ 48%]
.............................                                            [ 50%]
tests/unit/common/test_sparse.py ...................                     [ 52%]
tests/unit/common/test_table.py ss...........sss........................ [ 54%]
..............................................s......................... [ 59%]
.................................................s...................... [ 64%]
........................................................................ [ 69%]
.............                                                            [ 70%]
tests/unit/spec_tests/test_attribute_spec.py ..........                  [ 70%]
tests/unit/spec_tests/test_dataset_spec.py .................             [ 72%]
tests/unit/spec_tests/test_dtype_spec.py .............                   [ 72%]
tests/unit/spec_tests/test_group_spec.py ............................... [ 75%]
................                                                         [ 76%]
tests/unit/spec_tests/test_link_spec.py .....                            [ 76%]
tests/unit/spec_tests/test_load_namespace.py ..............              [ 77%]
tests/unit/spec_tests/test_ref_spec.py ...                               [ 77%]
tests/unit/spec_tests/test_spec_catalog.py ............                  [ 78%]
tests/unit/spec_tests/test_spec_write.py ..........                      [ 79%]
tests/unit/utils_test/test_core_DataChunk.py ...                         [ 79%]
tests/unit/utils_test/test_core_DataChunkIterator.py ................... [ 80%]
............                                                             [ 81%]
tests/unit/utils_test/test_core_DataIO.py ......                         [ 81%]
tests/unit/utils_test/test_core_GenericDataChunkIterator.py ............ [ 82%]
..................s                                                      [ 83%]
tests/unit/utils_test/test_core_ShapeValidator.py ...............        [ 84%]
tests/unit/utils_test/test_docval.py ................................... [ 87%]
......................................................................   [ 92%]
tests/unit/utils_test/test_labelleddict.py ............................. [ 94%]
..                                                                       [ 94%]
tests/unit/utils_test/test_utils.py ..................                   [ 95%]
tests/unit/validator_tests/test_errors.py ........                       [ 95%]
tests/unit/validator_tests/test_validate.py ............................ [ 97%]
........................s.......                                         [100%]
=============================== warnings summary ===============================
tests/unit/test_container.py: 1 warning
tests/unit/test_io_hdf5_h5tools.py: 4 warnings
tests/unit/common/test_resources.py: 63 warnings
  /builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch/usr/lib/python3.12/site-packages/hdmf/container.py:212: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility
    warn(_exp_warn_msg(cls))
tests/unit/test_io_hdf5_h5tools.py: 3 warnings
tests/unit/test_table.py: 1 warning
tests/unit/common/test_linkedtables.py: 16 warnings
tests/unit/common/test_resources.py: 18 warnings
tests/unit/common/test_table.py: 275 warnings
  /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated.  Please use `np.result_type` or `np.promote_types`.
  See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information.  (Deprecated NumPy 1.25)
    return np.find_common_type(types, [])
tests/unit/common/test_table.py: 20 warnings
  /builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch/usr/lib/python3.12/site-packages/hdmf/container.py:212: UserWarning: EnumData is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility
    warn(_exp_warn_msg(cls))
tests/unit/utils_test/test_core_GenericDataChunkIterator.py::GenericDataChunkIteratorTests::test_progress_bar
tests/unit/utils_test/test_core_GenericDataChunkIterator.py::GenericDataChunkIteratorTests::test_progress_bar
tests/unit/utils_test/test_core_GenericDataChunkIterator.py::GenericDataChunkIteratorTests::test_progress_bar_assertion
tests/unit/utils_test/test_core_GenericDataChunkIterator.py::GenericDataChunkIteratorTests::test_progress_bar_no_options
tests/unit/utils_test/test_core_GenericDataChunkIterator.py::GenericDataChunkIteratorTests::test_progress_bar_no_options
  /usr/lib/python3.12/site-packages/tqdm/std.py:580: DeprecationWarning: datetime.datetime.utcfromtimestamp() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.fromtimestamp(timestamp, datetime.UTC).
    if rate and total else datetime.utcfromtimestamp(0))
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
==== 1431 passed, 43 skipped, 1 xfailed, 406 warnings in 675.04s (0:11:15) =====
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: python3-hdmf-3.11.0-1.fc39.noarch
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.ZHZp9v
+ umask 022
+ cd /builddir/build/BUILD
+ cd hdmf-3.11.0
+ DOCDIR=/builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch/usr/share/doc/python3-hdmf
+ export LC_ALL=
+ LC_ALL=
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch/usr/share/doc/python3-hdmf
+ cp -pr /builddir/build/BUILD/hdmf-3.11.0/README.rst /builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch/usr/share/doc/python3-hdmf
+ cp -pr /builddir/build/BUILD/hdmf-3.11.0/Legal.txt /builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch/usr/share/doc/python3-hdmf
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.L4oc9i
+ umask 022
+ cd /builddir/build/BUILD
+ cd hdmf-3.11.0
+ LICENSEDIR=/builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch/usr/share/licenses/python3-hdmf
+ export LC_ALL=
+ LC_ALL=
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch/usr/share/licenses/python3-hdmf
+ cp -pr /builddir/build/BUILD/hdmf-3.11.0/license.txt /builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch/usr/share/licenses/python3-hdmf
+ RPM_EC=0
++ jobs -p
+ exit 0
warning: absolute symlink: /usr/lib/python3.12/site-packages/hdmf/common/hdmf-common-schema -> /usr/share/hdmf-common-schema/
Provides: python-hdmf = 3.11.0-1.fc39 python3-hdmf = 3.11.0-1.fc39 python3.12-hdmf = 3.11.0-1.fc39 python3.12dist(hdmf) = 3.11 python3dist(hdmf) = 3.11
Requires(rpmlib): rpmlib(BuiltinLuaScripts) <= 4.2.2-1 rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/python3 python(abi) = 3.12 python3.12dist(h5py) >= 2.10 python3.12dist(jsonschema) >= 2.6 python3.12dist(numpy) >= 1.18 python3.12dist(pandas) >= 1.0.5 python3.12dist(ruamel-yaml) >= 0.16 python3.12dist(scipy) >= 1.4
Processing files: python3-hdmf+zarr-3.11.0-1.fc39.noarch
Provides: python-hdmf+zarr = 3.11.0-1.fc39 python3-hdmf+zarr = 3.11.0-1.fc39 python3.12-hdmf+zarr = 3.11.0-1.fc39 python3.12dist(hdmf[zarr]) = 3.11 python3dist(hdmf[zarr]) = 3.11
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: python(abi) = 3.12 python3.12dist(zarr) >= 2.12
Processing files: python3-hdmf+tqdm-3.11.0-1.fc39.noarch
Provides: python-hdmf+tqdm = 3.11.0-1.fc39 python3-hdmf+tqdm = 3.11.0-1.fc39 python3.12-hdmf+tqdm = 3.11.0-1.fc39 python3.12dist(hdmf[tqdm]) = 3.11 python3dist(hdmf[tqdm]) = 3.11
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: python(abi) = 3.12 python3.12dist(tqdm) >= 4.41
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-hdmf-3.11.0-1.fc39.noarch
Wrote: /builddir/build/SRPMS/python-hdmf-3.11.0-1.fc39.src.rpm
Wrote: /builddir/build/RPMS/python3-hdmf+tqdm-3.11.0-1.fc39.noarch.rpm
Wrote: /builddir/build/RPMS/python3-hdmf+zarr-3.11.0-1.fc39.noarch.rpm
Wrote: /builddir/build/RPMS/python3-hdmf-3.11.0-1.fc39.noarch.rpm
RPM build warnings:
    absolute symlink: /usr/lib/python3.12/site-packages/hdmf/common/hdmf-common-schema -> /usr/share/hdmf-common-schema/
Child return code was: 0