Mock Version: 5.0
Mock Version: 5.0
Mock Version: 5.0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target riscv64 --nodeps /builddir/build/SPECS/bout++.spec'], chrootPath='/var/lib/mock/f40-build-2668503-67189/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffffff7047dc10>timeout=864000uid=996gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target riscv64 --nodeps /builddir/build/SPECS/bout++.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False
Building target platforms: riscv64
Building for target riscv64
setting SOURCE_DATE_EPOCH=1712016000
Wrote: /builddir/build/SRPMS/bout++-5.1.0-1.fc40.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --noclean --target riscv64 --nodeps /builddir/build/SPECS/bout++.spec'], chrootPath='/var/lib/mock/f40-build-2668503-67189/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffffff7047dc10>timeout=864000uid=996gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --noclean --target riscv64 --nodeps /builddir/build/SPECS/bout++.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False
Building target platforms: riscv64
Building for target riscv64
setting SOURCE_DATE_EPOCH=1711929600
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.SHqOF2
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf BOUT++-v5.1.0
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/BOUT++-v5.1.0.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd BOUT++-v5.1.0
+ rm -rf /builddir/build/BUILD/BOUT++-v5.1.0-SPECPARTS
+ /usr/bin/mkdir -p /builddir/build/BUILD/BOUT++-v5.1.0-SPECPARTS
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-fmt10.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0002-sphinx.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/test-timeout.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ sed -e 's/html_theme = "sphinx_book_theme"/html_theme = "sphinxdoc"/' -i manual/sphinx/conf.py
+ rm -rf externalpackages/mpark.variant/
+ mkdir -p externalpackages/mpark.variant/include/
+ rm -rf tools/pylib/boutdata
+ rm -rf tools/pylib/boututils
++ find -L tools/pylib/ -type f
++ grep -v _boutcore_build
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/Makefile
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/README.md
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/boutconfig/__init__.py.cin
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/boutconfig/__init__.py.in
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/post_bout/pb_draw.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/post_bout/grate2.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/post_bout/pb_nonlinear.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/post_bout/ListDict.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/post_bout/pb_present.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/post_bout/basic_info.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/post_bout/pb_corral.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/post_bout/rms.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/post_bout/__init__.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/post_bout/read_cxx.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/post_bout/read_inp.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/.gitignore
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutcpp.pxd.jinja
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/resolve_enum_inv.pyx.jinja
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/helper.cxx.jinja
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/setup.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/generate.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/scan_enums.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/Makefile
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/debug_setup.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutpp.pyx.jinja
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/helper.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/helper.h.jinja
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/GENERATION.md
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutpp_openmpi_compat.hxx
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/backend.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutexception_helper.cxx
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/CMakeLists.txt
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/.gitignore
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutexception_helper.hxx
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/resolve_enum.pxd.jinja
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/bout_options.pxd
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/debug_helper.hxx
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutpp.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/geninput.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/other_enums.hxx
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.xWdd2s
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd BOUT++-v5.1.0
+ export CC=mpicc
+ CC=mpicc
+ export CXX=mpicxx
+ CXX=mpicxx
+ for mpi in openmpi mpich
+ mkdir build_openmpi
+ for mpi in openmpi mpich
+ mkdir build_mpich
+ for mpi in openmpi mpich
+ '[' openmpi = mpich ']'
+ '[' openmpi = openmpi ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS='
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
_mlstatus=$?;
return $_mlstatus;
};
module() {
local _mlredir=0;
if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
_mlredir=0;
elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
_mlredir=1;
fi;
fi;
case " $@ " in
*'\'' --no-redirect '\''*) _mlredir=0 ;;
*'\'' --redirect '\''*) _mlredir=1 ;;
esac;
if [ $_mlredir -eq 0 ]; then
_module_raw "$@";
else
_module_raw "$@" 2>&1;
fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS='
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
_mlstatus=$?;
return $_mlstatus;
};
module() {
local _mlredir=0;
if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
_mlredir=0;
elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
_mlredir=1;
fi;
fi;
case " $@ " in
*'\'' --no-redirect '\''*) _mlredir=0 ;;
*'\'' --redirect '\''*) _mlredir=1 ;;
esac;
if [ $_mlredir -eq 0 ]; then
_module_raw "$@";
else
_module_raw "$@" 2>&1;
fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module load mpi/openmpi-riscv64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw load mpi/openmpi-riscv64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-riscv64
+ eval 'MPI_COMPILER=openmpi-riscv64; export MPI_COMPILER;
LD_LIBRARY_PATH=/usr/lib64/openmpi/lib; export LD_LIBRARY_PATH;
MPI_MAN=/usr/share/man/openmpi-riscv64; export MPI_MAN;
MANPATH=/usr/share/man/openmpi-riscv64:/usr/share/man:; export MANPATH;
MPI_INCLUDE=/usr/include/openmpi-riscv64; export MPI_INCLUDE;
_LMFILES_=/usr/share/modulefiles/mpi/openmpi-riscv64; export _LMFILES_;
LOADEDMODULES=mpi/openmpi-riscv64; export LOADEDMODULES;
CMAKE_PREFIX_PATH=/usr/lib64/openmpi; export CMAKE_PREFIX_PATH;
PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
MPI_PYTHON3_SITEARCH=/usr/lib64/python3.12/site-packages/openmpi; export MPI_PYTHON3_SITEARCH;
MPI_HOME=/usr/lib64/openmpi; export MPI_HOME;
MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi; export MPI_FORTRAN_MOD_DIR;
__MODULES_LMALTNAME=mpi/openmpi-riscv64\&as\|mpi/default\&as\|mpi/latest; export __MODULES_LMALTNAME;
__MODULES_LMCONFLICT=mpi/openmpi-riscv64\&mpi; export __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH;
MPI_SUFFIX=_openmpi; export MPI_SUFFIX;
MPI_SYSCONFIG=/etc/openmpi-riscv64; export MPI_SYSCONFIG;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
MPI_LIB=/usr/lib64/openmpi/lib; export MPI_LIB;
PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
MPI_BIN=/usr/lib64/openmpi/bin; export MPI_BIN;
test 0;'
++ MPI_COMPILER=openmpi-riscv64
++ export MPI_COMPILER
++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
++ export LD_LIBRARY_PATH
++ MPI_MAN=/usr/share/man/openmpi-riscv64
++ export MPI_MAN
++ MANPATH=/usr/share/man/openmpi-riscv64:/usr/share/man:
++ export MANPATH
++ MPI_INCLUDE=/usr/include/openmpi-riscv64
++ export MPI_INCLUDE
++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-riscv64
++ export _LMFILES_
++ LOADEDMODULES=mpi/openmpi-riscv64
++ export LOADEDMODULES
++ CMAKE_PREFIX_PATH=/usr/lib64/openmpi
++ export CMAKE_PREFIX_PATH
++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.12/site-packages/openmpi
++ export MPI_PYTHON3_SITEARCH
++ MPI_HOME=/usr/lib64/openmpi
++ export MPI_HOME
++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi
++ export MPI_FORTRAN_MOD_DIR
++ __MODULES_LMALTNAME='mpi/openmpi-riscv64&as|mpi/default&as|mpi/latest'
++ export __MODULES_LMALTNAME
++ __MODULES_LMCONFLICT='mpi/openmpi-riscv64&mpi'
++ export __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:2
++ export __MODULES_SHARE_MANPATH
++ MPI_SUFFIX=_openmpi
++ export MPI_SUFFIX
++ MPI_SYSCONFIG=/etc/openmpi-riscv64
++ export MPI_SYSCONFIG
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ MPI_LIB=/usr/lib64/openmpi/lib
++ export MPI_LIB
++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ MPI_BIN=/usr/lib64/openmpi/bin
++ export MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ export PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe
+ PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe
+ CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=mpicc
+ export CC
+ CXX=mpicxx
+ export CXX
+ /usr/bin/cmake -S . -B build_openmpi -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBOUT_USE_FFTW=ON -DBOUT_USE_NETCDF=ON -DBOUT_USE_SCOREP=OFF -DBOUT_USE_SYSTEM_MPARK_VARIANT=ON -DBOUT_USE_LAPACK=ON -DBOUT_USE_NLS=ON -DBOUT_USE_SYSTEM_FMT=ON -DBOUT_USE_UUID_SYSTEM_GENERATOR=ON -DCMAKE_INSTALL_PREFIX=/ -DCMAKE_INSTALL_LIBDIR=/usr/lib64/openmpi/lib -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin -DCMAKE_INSTALL_INCLUDEDIR=/usr/include/openmpi-riscv64/bout++/ -DCMAKE_INSTALL_DATAROOTDIR=/usr/share -DCMAKE_INSTALL_PYTHON_SITEARCH=/usr/lib64/python3.12/site-packages/openmpi -DBOUT_TEST_TIMEOUT=900 -DBOUT_BUILD_DOCS=ON -DBOUT_USE_PETSC=ON -DBOUT_USE_SUNDIALS=ON
-- Configuring BOUT++ version 5.2.0
-- The CXX compiler identification is GNU 13.2.1
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/lib64/openmpi/bin/mpicxx - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Python3: /usr/bin/python3.12 (found version "3.12.0") found components: Interpreter
-- Could NOT find ClangFormat (missing: ClangFormat_BIN)
Matplotlib is building the font cache; this may take a moment.
CMake Warning (dev) at CMakeLists.txt:391 (message):
'src/field/generated_fieldops.cxx' will not be regenerated when you make
changes to either 'src/field/gen_fieldops.py' or
'src/field/gen_fieldops.jinja'. This is because either Python3 or
clang-format is missing (see above messages for more information) or
BOUT_GENERATE_FIELDOPS is OFF (current value: OFF). This warning is only
important for BOUT++ developers and can otherwise be safely ignored.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found Python: /usr/bin/python3.12 (found suitable version "3.12.0", minimum required is "3.6") found components: Interpreter Development Development.Module Development.Embed
-- Found Numpy: /usr/include (found version "1.26.0")
-- Found Cython: TRUE (found version "3.0.6")
-- Found Bash: /usr/bin/bash (found version "5.2.26")
-- Building BOUT++ Python interface
-- Found MPI_CXX: /usr/lib64/openmpi/bin/mpicxx (found version "3.1")
-- Found MPI: TRUE (found version "3.1")
-- Enable OpenMP: OFF
-- HYPRE support: OFF
-- Found PkgConfig: /usr/bin/pkg-config (found version "1.9.5")
-- Checking for one of the modules 'PETSc>3.4.0;petsc>3.4.0'
-- Found PETSc: /usr/include/openmpi-riscv64/petsc
-- PETSc support: ON
-- Using external mpark.variant
-- Using external fmt
-- PVODE support: ON
-- Found netCDF: /usr/lib64/libnetcdf.so (found version "4.9.2")
-- Found netCDFCxx version 4.3.1
-- Found netCDFCxx: /usr/lib64/libnetcdf_c++4.so (found version "4.3.1")
-- NetCDF support: ON
-- Found FFTW: /usr/lib64/libfftw3.so
-- FFTW support: ON
-- Looking for sgemm_
-- Looking for sgemm_ - not found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- Found BLAS: /usr/lib64/libflexiblas.so
-- Looking for cheev_
-- Looking for cheev_ - found
-- Found LAPACK: /usr/lib64/libflexiblas.so;-lm;-ldl
-- LAPACK support: TRUE
-- SLEPc support: OFF
-- SUNDIALS support: ON
-- Found Gettext: /usr/bin/msgmerge (found version "0.22")
-- Found Intl: built in to C library
-- libuuid not found, using fallback UUID generator
-- UUID_SYSTEM_GENERATOR: FALSE
-- Enable coverage: OFF
-- Git revision: Unknown
-- Performing Test HAS_FLAG__Wnull_dereference
-- Performing Test HAS_FLAG__Wnull_dereference - Success
-- Warning flag is supported by compiler: -Wnull-dereference
-- Found negative flag: -Wno-cast-function-type
replaced with -Wcast-function-type
-- Performing Test HAS_FLAG__Wno_cast_function_type
-- Performing Test HAS_FLAG__Wno_cast_function_type - Success
-- Warning flag is supported by compiler: -Wno-cast-function-type
-- Runtime checking level: CHECK=2
-- Message stack: BOUT_USE_MSGSTACK=ON
-- Extra debug output: BOUT_USE_OUTPUT_DEBUG=OFF
-- Signal handling: BOUT_USE_SIGNAL=ON
-- Output coloring: BOUT_USE_COLOR=ON
-- Field name tracking: BOUT_USE_TRACK=ON
-- Signalling floating point exceptions: BOUT_USE_SIGFPE=OFF
-- Enable backtrace: BOUT_USE_BACKTRACE=ON
-- Performing Test HAS_PRETTY_FUNCTION
-- Performing Test HAS_PRETTY_FUNCTION - Success
-- Setting build type to 'RelWithDebInfo' as none was specified.
CMake Deprecation Warning at externalpackages/googletest/CMakeLists.txt:4 (cmake_minimum_required):
Compatibility with CMake < 3.5 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
-- The C compiler identification is GNU 13.2.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/lib64/openmpi/bin/mpicc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
CMake Deprecation Warning at externalpackages/googletest/googlemock/CMakeLists.txt:45 (cmake_minimum_required):
Compatibility with CMake < 3.5 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
CMake Deprecation Warning at externalpackages/googletest/googletest/CMakeLists.txt:56 (cmake_minimum_required):
Compatibility with CMake < 3.5 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
-- Found Python: /usr/bin/python3.12 (found version "3.12.0") found components: Interpreter
-- Not building test test-laplace-hypre3d, requirement not met: BOUT_HAS_HYPRE
-- Not building test test-laplacexy2-hypre, requirement not met: BOUT_HAS_HYPRE
-- Not building test test-slepc-solver, requirement not met: BOUT_HAS_SLEPC
-- Not building test MMS-advection-arakawa, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-advection-central, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-advection-upwind, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-advection-weno3, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-diffusion2, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-hw, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-laplace, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-advection, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-d2dx2, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-d2dz2, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-diffusion, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-time, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-time-petsc, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building example test_laplacexy_hypre, requirement not met: BOUT_HAS_HYPRE
-- Found Doxygen: /usr/bin/doxygen (found version "1.10.0") found components: doxygen dot
-- Found Sphinx: /usr/bin/sphinx-build
--------------------------------
BOUT++ Configuration Summary
--------------------------------
Bundled PVODE support : ON
PETSc support : ON
SLEPc support : OFF
SUNDIALS support : ON
HYPRE support : OFF
NetCDF support : ON
FFTW support : ON
LAPACK support : TRUE
OpenMP support : OFF
Natural language support : ON
ScoreP support : OFF
System UUID generator : FALSE
Extra debug output : OFF
Runtime error check level: 2
Signal handling : ON
Output coloring : ON
Field name tracking : ON
Floating point exceptions: OFF
Backtrace enabled : ON
RAJA enabled : OFF
Umpire enabled : OFF
Caliper enabled : OFF
CUDA enabled : OFF
Metric type : 2D
Python API support : ON
Sanitizers enabled : None
=== Python ===
Make sure that the tools/pylib directory is in your PYTHONPATH
e.g. by adding to your ~/.bashrc file
export PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib:/builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib:$PYTHONPATH
*** Now run `cmake --build /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi` to compile BOUT++ ***
-- Configuring done (1718.4s)
-- Generating done (146.9s)
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_CXX_FLAGS_RELEASE
CMAKE_C_FLAGS_RELEASE
CMAKE_Fortran_FLAGS_RELEASE
CMAKE_INSTALL_DO_STRIP
INCLUDE_INSTALL_DIR
LIB_INSTALL_DIR
LIB_SUFFIX
SHARE_INSTALL_PREFIX
SYSCONF_INSTALL_DIR
-- Build files have been written to: /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi
+ /usr/bin/cmake --build build_openmpi -j8 --verbose
Change Dir: '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j8
/usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi//CMakeFiles/progress.marks
/usr/bin/gmake -f CMakeFiles/Makefile2 all
gmake[1]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
/usr/bin/gmake -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/depend
/usr/bin/gmake -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/depend
/usr/bin/gmake -f CMakeFiles/mofiles.dir/build.make CMakeFiles/mofiles.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE/CMakeFiles/pvpre.dir/DependInfo.cmake "--color="
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles/mofiles.dir/DependInfo.cmake "--color="
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE/CMakeFiles/pvode.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
/usr/bin/gmake -f CMakeFiles/mofiles.dir/build.make CMakeFiles/mofiles.dir/build
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
/usr/bin/gmake -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/build
/usr/bin/gmake -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 0%] Generating locale/es/libbout.gmo, _mo_file_es
cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/locale/es/
[ 2%] Generating locale/fr/libbout.gmo, _mo_file_fr
[ 2%] Building CXX object externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/locale/fr/
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvpre_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o -MF CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o.d -o CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/precon/pvbbdpre.cpp
[ 2%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o
[ 2%] Generating locale/de/libbout.gmo, _mo_file_de
[ 2%] Generating locale/zh_CN/libbout.gmo, _mo_file_zh_CN
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o -MF CMakeFiles/pvode.dir/source/cvode.cpp.o.d -o CMakeFiles/pvode.dir/source/cvode.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp
cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/locale/zh_CN/
cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/locale/de/
[ 2%] Generating locale/zh_TW/libbout.gmo, _mo_file_zh_TW
cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/locale/zh_TW/
[ 5%] Building CXX object externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvpre_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o -MF CMakeFiles/pvpre.dir/precon/band.cpp.o.d -o CMakeFiles/pvpre.dir/precon/band.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/precon/band.cpp
cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/locale/es/libbout.gmo /builddir/build/BUILD/BOUT++-v5.1.0/locale/es/libbout.po
cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/locale/fr/libbout.gmo /builddir/build/BUILD/BOUT++-v5.1.0/locale/fr/libbout.po
cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/locale/zh_TW/libbout.gmo /builddir/build/BUILD/BOUT++-v5.1.0/locale/zh_TW/libbout.po
cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/locale/de/libbout.gmo /builddir/build/BUILD/BOUT++-v5.1.0/locale/de/libbout.po
cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/locale/zh_CN/libbout.gmo /builddir/build/BUILD/BOUT++-v5.1.0/locale/zh_CN/libbout.po
[ 5%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o -MF CMakeFiles/pvode.dir/source/nvector.cpp.o.d -o CMakeFiles/pvode.dir/source/nvector.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 8%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o -MF CMakeFiles/pvode.dir/source/llnlmath.cpp.o.d -o CMakeFiles/pvode.dir/source/llnlmath.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/llnlmath.cpp
[ 8%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o -MF CMakeFiles/pvode.dir/source/cvspgmr.cpp.o.d -o CMakeFiles/pvode.dir/source/cvspgmr.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvspgmr.cpp
[ 8%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o -MF CMakeFiles/pvode.dir/source/spgmr.cpp.o.d -o CMakeFiles/pvode.dir/source/spgmr.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp
[ 8%] Built target mofiles
[ 8%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o -MF CMakeFiles/pvode.dir/source/iterativ.cpp.o.d -o CMakeFiles/pvode.dir/source/iterativ.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/iterativ.cpp
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:429: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
429 | #pragma omp parallel for reduction(+: sum)
|
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:485: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
485 | #pragma omp parallel for reduction(+: sum)
|
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:543: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
543 | #pragma omp parallel for reduction(+: sum)
|
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:565: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
565 | #pragma omp parallel for reduction(+: sum)
|
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:583: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
583 | #pragma omp parallel for
|
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:698: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
698 | #pragma omp parallel for
|
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:714: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
714 | #pragma omp parallel for
|
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:730: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
730 | #pragma omp parallel for
|
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:745: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
745 | #pragma omp parallel for
|
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:761: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
761 | #pragma omp parallel for
|
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:777: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
777 | #pragma omp parallel for
|
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:793: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
793 | #pragma omp parallel for
|
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:809: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
809 | #pragma omp parallel for
|
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:824: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
824 | #pragma omp parallel for
|
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:831: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
831 | #pragma omp parallel for
|
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:837: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
837 | #pragma omp parallel for
|
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:850: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
850 | #pragma omp parallel for
|
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp: In function ‘void pvode::N_VLinearSum(real, N_Vector, real, N_Vector, N_Vector)’:
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:189:12: warning: unused variable ‘v’ [-Wunused-variable]
189 | N_Vector v, v1, v2;
| ^
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp: In function ‘int pvode::SpgmrSolve(SpgmrMem, void*, N_Vector, N_Vector, int, int, real, int, void*, N_Vector, N_Vector, ATimesFn, PSolveFn, real*, int*, int*)’:
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp:159:8: warning: unused variable ‘s_r0_norm’ [-Wunused-variable]
159 | real s_r0_norm, beta, rotation_product, r_norm, s_product, rho;
| ^~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp: In function ‘pvode::real pvode::N_VWL2Norm(N_Vector, N_Vector)’:
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:533:14: warning: variable ‘N_global’ set but not used [-Wunused-but-set-variable]
533 | integer N, N_global;
| ^~~~~~~~
[ 11%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o -MF CMakeFiles/pvode.dir/source/cvdiag.cpp.o.d -o CMakeFiles/pvode.dir/source/cvdiag.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvdiag.cpp
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp:328:17: warning: ‘krydim’ may be used uninitialized [-Wmaybe-uninitialized]
328 | for (i=1; i <= krydim; i++) yg[i]=ZERO;
| ~~^~~~~~~~~
[ 11%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp:161:36: note: ‘krydim’ was declared here
161 | int i, j, k, l, l_plus_1, l_max, krydim, ier, ntries;
| ^~~~~~
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o -MF CMakeFiles/pvode.dir/source/smalldense.cpp.o.d -o CMakeFiles/pvode.dir/source/smalldense.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/smalldense.cpp
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp:386:3: warning: ‘rho’ may be used uninitialized [-Wmaybe-uninitialized]
386 | if (rho < beta) {
| ^~
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp:159:62: note: ‘rho’ was declared here
159 | real s_r0_norm, beta, rotation_product, r_norm, s_product, rho;
| ^~~
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/smalldense.cpp: In function ‘pvode::integer pvode::gefa(real**, integer, integer*)’:
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/smalldense.cpp:82:14: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
82 | if (swap = (l != k)) {
| ~~~~~^~~~~~~~~~
[ 11%] Linking CXX shared library ../../lib/libpvpre.so
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/bin/cmake -E cmake_link_script CMakeFiles/pvpre.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libpvpre.so.1.0.0 -o ../../lib/libpvpre.so.1.0.0 CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o CMakeFiles/pvpre.dir/precon/band.cpp.o -Wl,-rpath,::::::::::::::::::::::::
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/bin/cmake -E cmake_symlink_library ../../lib/libpvpre.so.1.0.0 ../../lib/libpvpre.so.1.0.0 ../../lib/libpvpre.so
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
In function ‘int pvode::CVnlsFunctional(CVodeMem)’,
inlined from ‘int pvode::CVnls(CVodeMem, int)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1826:45,
inlined from ‘int pvode::CVStep(CVodeMem)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1358:18,
inlined from ‘int pvode::CVode(void*, real, N_Vector, real*, int)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:882:19:
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1876:49: warning: ‘delp’ may be used uninitialized [-Wmaybe-uninitialized]
1876 | if ((m==maxcor) || ((m >= 2) && (del > RDIV * delp)))
| ^
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp: In function ‘int pvode::CVode(void*, real, N_Vector, real*, int)’:
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1843:13: note: ‘delp’ was declared here
1843 | real del, delp, dcon;
| ^~~~
In function ‘int pvode::CVNewtonIteration(CVodeMem)’,
inlined from ‘int pvode::CVnlsNewton(CVodeMem, int)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1944:28,
inlined from ‘int pvode::CVnls(CVodeMem, int)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1827:41,
inlined from ‘int pvode::CVStep(CVodeMem)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1358:18,
inlined from ‘int pvode::CVode(void*, real, N_Vector, real*, int)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:882:19:
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:2021:50: warning: ‘delp’ may be used uninitialized [-Wmaybe-uninitialized]
2021 | if ((m == maxcor) || ((m >= 2) && (del > RDIV*delp))) {
| ^
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp: In function ‘int pvode::CVode(void*, real, N_Vector, real*, int)’:
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1971:13: note: ‘delp’ was declared here
1971 | real del, delp, dcon;
| ^~~~
[ 11%] Built target pvpre
[ 11%] Linking CXX shared library ../../lib/libpvode.so
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/bin/cmake -E cmake_link_script CMakeFiles/pvode.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libpvode.so.1.0.0 -o ../../lib/libpvode.so.1.0.0 CMakeFiles/pvode.dir/source/cvode.cpp.o CMakeFiles/pvode.dir/source/nvector.cpp.o CMakeFiles/pvode.dir/source/llnlmath.cpp.o CMakeFiles/pvode.dir/source/cvspgmr.cpp.o CMakeFiles/pvode.dir/source/spgmr.cpp.o CMakeFiles/pvode.dir/source/iterativ.cpp.o CMakeFiles/pvode.dir/source/cvdiag.cpp.o CMakeFiles/pvode.dir/source/smalldense.cpp.o -Wl,-rpath,::::::::::::::::::::::::
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE && /usr/bin/cmake -E cmake_symlink_library ../../lib/libpvode.so.1.0.0 ../../lib/libpvode.so.1.0.0 ../../lib/libpvode.so
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 11%] Built target pvode
/usr/bin/gmake -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 14%] Generating bout++-time.cxx
/usr/bin/cmake -P /builddir/build/BUILD/BOUT++-v5.1.0/cmake/GenerateDateTimeFile.cmake
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles/bout++.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
/usr/bin/gmake -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/field3d.cxx.o
[ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/field_data.cxx.o
[ 17%] Building CXX object CMakeFiles/bout++.dir/src/bout++.cxx.o
[ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/field2d.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/bout++.cxx.o -MF CMakeFiles/bout++.dir/src/bout++.cxx.o.d -o CMakeFiles/bout++.dir/src/bout++.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/bout++.cxx
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/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexy/laplacexy.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexy/laplacexy.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexy/laplacexy.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplacexy/laplacexy.cxx
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/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplacexy2/laplacexy2.cxx
[ 37%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2_hypre.cxx.o
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[ 40%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx
In file included from /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplacexy2/laplacexy2_hypre.cxx:1:
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invert/laplacexy2_hypre.hxx:41:2: warning: #warning LaplaceXY requires Hypre. No LaplaceXY available [-Wcpp]
41 | #warning LaplaceXY requires Hypre. No LaplaceXY available
| ^~~~~~~
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/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_factory.cxx
[ 42%] Building CXX object CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o
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[ 45%] Building CXX object CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx
[ 45%] Building CXX object CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/coordinates.cxx
[ 45%] Building CXX object CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/coordinates_accessor.cxx
[ 45%] Building CXX object CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/data/gridfromfile.cxx
/builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx: In function ‘void verifyNumPoints(BoundaryRegion*, int)’:
/builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:80:21: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
80 | if (mesh->firstY()) {
| ~~~~~~~~~~~~^~
In file included from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field_factory.hxx:32,
from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/boundary_standard.hxx:9,
from /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:1:
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here
441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
| ^~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:83:20: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
83 | if (mesh->lastY()) {
| ~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here
445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
| ^~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet::apply(Field3D&, BoutReal)’:
/builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:473:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
473 | val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz),
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
474 | t);
| ~~
In file included from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field_data.hxx:51,
from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field.hxx:39,
from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field2d.hxx:34,
from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/boundary_op.hxx:9,
from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/boundary_standard.hxx:6:
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:70:3: note: declared here
70 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
| ^~~~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:517:33: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
517 | val = fg->generate(xnorm, TWOPI * ynorm,
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
518 | TWOPI * (zk - 0.5) / (mesh->LocalNz), t);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:70:3: note: declared here
70 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
| ^~~~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet_O3::apply(Field3D&, BoutReal)’:
/builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:978:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
978 | val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz),
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
979 | t);
| ~~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:70:3: note: declared here
70 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
| ^~~~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet_O4::apply(Field3D&, BoutReal)’:
/builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:1444:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
1444 | val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz),
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1445 | t);
| ~~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:70:3: note: declared here
70 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
| ^~~~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryNeumann::apply(Field3D&, BoutReal)’:
/builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:2152:33: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
2152 | val = fg->generate(xnorm, TWOPI * ynorm,
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2153 | TWOPI * (zk - 0.5) / (mesh->LocalNz), t);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:70:3: note: declared here
70 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
| ^~~~~~~~
[ 48%] Building CXX object CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/data/gridfromoptions.cxx
[ 48%] Building CXX object CMakeFiles/bout++.dir/src/mesh/difops.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/difops.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/difops.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/difops.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/difops.cxx
[ 48%] Building CXX object CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/fv_ops.cxx
[ 48%] Building CXX object CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/impls/bout/boutmesh.cxx
[ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/index_derivs.cxx
[ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/interpolation_xz.cxx
/builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/fv_ops.cxx: In function ‘void FV::communicateFluxes(Field3D&)’:
/builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/fv_ops.cxx:471:15: warning: ‘xout’ may be used uninitialized [-Wmaybe-uninitialized]
471 | mesh->wait(xout);
| ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/fv_ops.cxx:442:20: note: ‘xout’ was declared here
442 | comm_handle xin, xout;
| ^~~~
[ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/interpolation/bilinear_xz.cxx
[ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/interpolation/hermite_spline_xz.cxx
[ 54%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/interpolation/hermite_spline_z.cxx
[ 54%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/interpolation/interpolation_z.cxx
In file included from /usr/include/c++/13/bits/shared_ptr.h:53,
from /usr/include/c++/13/memory:80,
from /usr/include/fmt/core.h:16,
from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/msg_stack.hxx:37,
from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/scorepwrapper.hxx:6,
from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/deriv_store.hxx:37,
from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:48,
from /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/impls/bout/boutmesh.hxx:8,
from /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/impls/bout/boutmesh.cxx:36:
In member function ‘std::__shared_ptr<_Tp, _Lp>::operator bool() const [with _Tp = ArrayData<double>; __gnu_cxx::_Lock_policy _Lp = __gnu_cxx::_S_mutex]’,
inlined from ‘bool std::operator==(const shared_ptr<_Tp>&, nullptr_t) [with _Tp = ArrayData<double>]’ at /usr/include/c++/13/bits/shared_ptr.h:562:14,
inlined from ‘bool Array<T, Backing>::empty() const [with T = double; Backing = ArrayData<double>]’ at /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/array.hxx:270:44,
inlined from ‘bool Field3D::isAllocated() const’ at /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field3d.hxx:203:48,
inlined from ‘int BoutMesh::pack_data(const std::vector<FieldData*>&, int, int, int, int, BoutReal*)’ at /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/impls/bout/boutmesh.cxx:2256:7:
/usr/include/c++/13/bits/shared_ptr_base.h:1670:16: warning: potential null pointer dereference [-Wnull-dereference]
1670 | { return _M_ptr != nullptr; }
| ^~~~~~
In member function ‘std::__shared_ptr<_Tp, _Lp>::operator bool() const [with _Tp = ArrayData<double>; __gnu_cxx::_Lock_policy _Lp = __gnu_cxx::_S_mutex]’,
inlined from ‘bool std::operator==(const shared_ptr<_Tp>&, nullptr_t) [with _Tp = ArrayData<double>]’ at /usr/include/c++/13/bits/shared_ptr.h:562:14,
inlined from ‘bool Array<T, Backing>::empty() const [with T = double; Backing = ArrayData<double>]’ at /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/array.hxx:270:44,
inlined from ‘bool Field2D::isAllocated() const’ at /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field2d.hxx:106:48,
inlined from ‘int BoutMesh::pack_data(const std::vector<FieldData*>&, int, int, int, int, BoutReal*)’ at /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/impls/bout/boutmesh.cxx:2267:7:
/usr/include/c++/13/bits/shared_ptr_base.h:1670:16: warning: potential null pointer dereference [-Wnull-dereference]
1670 | { return _M_ptr != nullptr; }
| ^~~~~~
[ 54%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/lagrange_4pt_xz.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/lagrange_4pt_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/lagrange_4pt_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/lagrange_4pt_xz.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/interpolation/lagrange_4pt_xz.cxx
[ 54%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/monotonic_hermite_spline_xz.cxx.o
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[ 82%] Building CXX object CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o
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[ 82%] Building CXX object CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o -MF CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/sys/generator_context.cxx
/builddir/build/BUILD/BOUT++-v5.1.0/src/sys/expressionparser.cxx: In member function ‘virtual double FieldGenerator::generate(const bout::generator::Context&)’:
/builddir/build/BUILD/BOUT++-v5.1.0/src/sys/expressionparser.cxx:43:18: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
43 | return generate(ctx.x(), ctx.y(), ctx.z(), ctx.t());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/BOUT++-v5.1.0/src/sys/expressionparser.cxx:25:
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:70:3: note: declared here
70 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
| ^~~~~~~~
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[ 85%] Building CXX object CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o
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[ 85%] Building CXX object CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o
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[ 88%] Building CXX object CMakeFiles/bout++.dir/src/sys/output.cxx.o
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[ 88%] Building CXX object CMakeFiles/bout++.dir/src/sys/petsclib.cxx.o
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[ 88%] Building CXX object CMakeFiles/bout++.dir/src/sys/slepclib.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/slepclib.cxx.o -MF CMakeFiles/bout++.dir/src/sys/slepclib.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/slepclib.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/sys/slepclib.cxx
[ 91%] Building CXX object CMakeFiles/bout++.dir/src/sys/timer.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/timer.cxx.o -MF CMakeFiles/bout++.dir/src/sys/timer.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/timer.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/sys/timer.cxx
In file included from /usr/include/openmpi-riscv64/ncFile.h:2,
from /usr/include/openmpi-riscv64/netcdf:16,
from /builddir/build/BUILD/BOUT++-v5.1.0/src/sys/options/options_netcdf.cxx:14:
/usr/include/openmpi-riscv64/ncGroup.h:18:14: warning: ‘netCDF::file_id’ defined but not used [-Wunused-variable]
18 | static int file_id;
| ^~~~~~~
[ 91%] Building CXX object CMakeFiles/bout++.dir/src/sys/type_name.cxx.o
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[ 91%] Building CXX object CMakeFiles/bout++.dir/bout++-time.cxx.o
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[ 91%] Linking CXX shared library lib/libbout++.so
/usr/bin/cmake -E cmake_link_script CMakeFiles/bout++.dir/link.txt --verbose=1
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CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/rkf34/rkf34.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/rkf45/rkf45.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/rkgeneric.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/rkscheme.cxx.o CMakeFiles/bout++.dir/src/solver/impls/slepc/slepc.cxx.o CMakeFiles/bout++.dir/src/solver/impls/snes/snes.cxx.o "CMakeFiles/bout++.dir/src/solver/impls/split-rk/split-rk.cxx.o" CMakeFiles/bout++.dir/src/solver/solver.cxx.o CMakeFiles/bout++.dir/src/sys/bout_types.cxx.o CMakeFiles/bout++.dir/src/sys/boutcomm.cxx.o CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o CMakeFiles/bout++.dir/src/sys/derivs.cxx.o CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o CMakeFiles/bout++.dir/src/sys/options.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o CMakeFiles/bout++.dir/src/sys/output.cxx.o CMakeFiles/bout++.dir/src/sys/petsclib.cxx.o CMakeFiles/bout++.dir/src/sys/range.cxx.o CMakeFiles/bout++.dir/src/sys/slepclib.cxx.o CMakeFiles/bout++.dir/src/sys/timer.cxx.o CMakeFiles/bout++.dir/src/sys/type_name.cxx.o CMakeFiles/bout++.dir/src/sys/utils.cxx.o "CMakeFiles/bout++.dir/bout++-time.cxx.o" -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib: /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/libfmt.so.10.2.1 lib/libpvode.so.1.0.0 lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl -ldl /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libnetcdf.so /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0
/usr/bin/cmake -E cmake_symlink_library lib/libbout++.so.5.1.0 lib/libbout++.so.5.1.0 lib/libbout++.so
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 91%] Built target bout++
/usr/bin/gmake -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 91%] Generating boutcpp.pxd
cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build
[ 94%] Generating boutpp.pyx
[ 94%] Generating resolve_enum.pxd
cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build
[ 94%] Generating helper.cxx
cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build
[ 94%] Generating helper.h
cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.12 generate.py boutcpp.pxd.jinja /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/boutcpp.pxd
cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.12 generate.py resolve_enum.pxd.jinja /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/resolve_enum.pxd
cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.12 generate.py boutpp.pyx.jinja /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/boutpp.pyx
cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.12 generate.py helper.cxx.jinja /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/helper.cxx
cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.12 generate.py helper.h.jinja /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/helper.h
[ 94%] Cythonizing python interface
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy boutpp.pyx libboutpp.pyx
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/python3.12 -m cython libboutpp.pyx --cplus -3 -X binding=True -X embedsignature=True
warning: resolve_enum.pxd:49:21: 'deflt' redeclared
warning: resolve_enum.pxd:189:24: 'Standard' redeclared
warning: resolve_enum.pxd:223:15: 'Standard' redeclared
warning: bout_options.pxd:22:21: Rvalue-reference as function argument not supported
warning: bout_options.pxd:24:32: Rvalue-reference as function argument not supported
performance hint: libboutpp.pyx:2065:5: Exception check on 'callback' will always require the GIL to be acquired.
Possible solutions:
1. Declare the function as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2. Use an 'int' return type on the function to allow an error code to be returned.
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
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gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 97%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/helper.cxx.o
[ 97%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/boutexception_helper.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_312_riscv64_linux_gnu_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build -I/usr/include/python3.12 -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/helper.cxx.o -MF CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/helper.cxx.o.d -o CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/helper.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/helper.cxx
[ 97%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/libboutpp.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_312_riscv64_linux_gnu_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build -I/usr/include/python3.12 -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/boutexception_helper.cxx.o -MF CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/boutexception_helper.cxx.o.d -o CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/boutexception_helper.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/boutexception_helper.cxx
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_312_riscv64_linux_gnu_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build -I/usr/include/python3.12 -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/libboutpp.cpp.o -MF CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/libboutpp.cpp.o.d -o CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/libboutpp.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp
In file included from /usr/include/numpy/ndarraytypes.h:1929,
from /usr/include/numpy/ndarrayobject.h:12,
from /usr/include/numpy/arrayobject.h:5,
from /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:1233:
/usr/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:40866:46: warning: ‘__pyx_obj_9libboutpp_Vector2D* __pyx_f_9libboutpp_v2dFromObj(Vector2D)’ defined but not used [-Wunused-function]
40866 | static struct __pyx_obj_9libboutpp_Vector2D *__pyx_f_9libboutpp_v2dFromObj(Vector2D __pyx_v_i) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp: In function ‘CELL_LOC __pyx_f_12resolve_enum_resolve_cell_loc(PyObject*)’:
/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:9306:10: warning: ‘__pyx_r’ may be used uninitialized [-Wmaybe-uninitialized]
9306 | return __pyx_r;
| ^~~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:8949:12: note: ‘__pyx_r’ was declared here
8949 | CELL_LOC __pyx_r;
| ^~~~~~~
In function ‘PyObject* __pyx_pf_9libboutpp_54bracket(PyObject*, __pyx_obj_9libboutpp_Field3D*, __pyx_obj_9libboutpp_Field3D*, PyObject*, PyObject*)’,
inlined from ‘PyObject* __pyx_pw_9libboutpp_55bracket(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:64888:42:
/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:64982:65: warning: ‘__pyx_r’ may be used uninitialized [-Wmaybe-uninitialized]
64982 | __pyx_t_1 = ((PyObject *)__pyx_f_9libboutpp_f3dFromObj(bracket((__pyx_v_a->cobj[0]), (__pyx_v_b->cobj[0]), __pyx_v_method_, __pyx_v_outloc_))); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 2989, __pyx_L1_error)
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp: In function ‘PyObject* __pyx_pw_9libboutpp_55bracket(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:10817:18: note: ‘__pyx_r’ was declared here
10817 | BRACKET_METHOD __pyx_r;
| ^~~~~~~
[ 97%] Linking CXX shared library libboutpp.cpython-312-riscv64-linux-gnu.so
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E cmake_link_script CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libboutpp.cpython-312-riscv64-linux-gnu.so -o libboutpp.cpython-312-riscv64-linux-gnu.so "CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/libboutpp.cpp.o" "CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/helper.cxx.o" "CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/boutexception_helper.cxx.o" -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib: ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 97%] Built target boutpp.cpython-312-riscv64-linux-gnu
/usr/bin/gmake -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
/usr/bin/gmake -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[100%] Building python interface
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpython-312-riscv64-linux-gnu.so /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/../boutpp/libboutpp.cpython-312-riscv64-linux-gnu.so
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build/boutpp.py /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/../boutpp/__init__.py
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[100%] Built target boutpp
gmake[1]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles 0
+ PYPA=
+ LDPA=/usr/lib64/openmpi/lib
++ pwd
+ export PYTHONPATH=:/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/
+ PYTHONPATH=:/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/
++ pwd
+ export LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib/
+ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib/
+ /usr/bin/cmake --build build_openmpi/manual -j8 --verbose
Change Dir: '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/manual'
Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j8
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/manual//CMakeFiles/progress.marks
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/gmake -f CMakeFiles/Makefile2 manual/all
gmake[1]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
/usr/bin/gmake -f manual/CMakeFiles/sphinx-html.dir/build.make manual/CMakeFiles/sphinx-html.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/manual /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/manual /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/manual/CMakeFiles/sphinx-html.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
/usr/bin/gmake -f manual/CMakeFiles/sphinx-html.dir/build.make manual/CMakeFiles/sphinx-html.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
Generating HTML documentation with Sphinx in /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/manual/docs
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/manual && /usr/bin/sphinx-build -b html /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/manual/docs
Running Sphinx v7.2.6
breathe module not installed
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making output directory... done
building [mo]: targets for 0 po files that are out of date
writing output...
building [html]: targets for 46 source files that are out of date
updating environment: [new config] 46 added, 0 changed, 0 removed
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reading sources... [ 11%] api_reference
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reading sources... [ 33%] index
reading sources... [ 35%] user_docs/BOUT_Gradperp_op
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looking for now-outdated files... /usr/lib/python3.12/site-packages/boutdata/collect.py:docstring of boutdata.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :no-index: for one of them
WARNING: autodoc: failed to import module 'mayavi2' from module 'boutdata'; the following exception was raised:
No module named 'enthought'
/usr/lib/python3.12/site-packages/boutdata/restart.py:docstring of boutdata.restart.shift_v3_to_v4:5: ERROR: Unexpected indentation.
/usr/lib/python3.12/site-packages/boutdata/restart.py:docstring of boutdata.restart.shift_v3_to_v4:6: WARNING: Block quote ends without a blank line; unexpected unindent.
/usr/lib/python3.12/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:56: WARNING: Footnote [1] is not referenced.
docstring of libboutpp.PhysicsModel:14: ERROR: Unexpected indentation.
/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/boutpp/__init__.py:docstring of libboutpp.create3D:3: ERROR: Unexpected indentation.
WARNING: autodoc: failed to import module 'analyse_equil_2' from module 'boututils'; the following exception was raised:
No module named 'crosslines'
WARNING: autodoc: failed to import module 'anim' from module 'boututils'; the following exception was raised:
No module named 'tvtk'
WARNING: autodoc: failed to import module 'boutgrid' from module 'boututils'; the following exception was raised:
No module named 'tvtk'
/usr/lib/python3.12/site-packages/boututils/calculus.py:docstring of boututils.calculus.deriv2D:14: ERROR: Unexpected indentation.
WARNING: autodoc: failed to import module 'crosslines' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'efit_analyzer' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'fft_deriv' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'int_func' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'mode_structure' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'moment_xyzt' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'radial_grid' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'surface_average' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'volume_integral' from module 'boututils'; the following exception was raised:
No module named 'past'
/usr/lib/python3.12/site-packages/zoidberg/field.py:docstring of zoidberg.field.DommaschkPotentials:3: ERROR: Unexpected indentation.
/usr/lib/python3.12/site-packages/zoidberg/field.py:docstring of zoidberg.field.MagneticField.attributes:1: WARNING: duplicate object description of zoidberg.field.MagneticField.attributes, other instance in _apidoc/zoidberg, use :no-index: for one of them
/usr/lib/python3.12/site-packages/zoidberg/field.py:docstring of zoidberg.field.MagneticField.boundary:1: WARNING: duplicate object description of zoidberg.field.MagneticField.boundary, other instance in _apidoc/zoidberg, use :no-index: for one of them
/usr/lib/python3.12/site-packages/zoidberg/field.py:docstring of zoidberg.field.RotatingEllipse:3: ERROR: Unexpected indentation.
/usr/lib/python3.12/site-packages/zoidberg/field.py:docstring of zoidberg.field.RotatingEllipse.coil:3: ERROR: Unexpected indentation.
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/api_reference.rst:4: WARNING: toctree glob pattern '_breathe_autogen/*' didn't match any documents
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/file_io.rst:114: ERROR: Unknown interpreted text role "py".
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/performance_profiling.rst:85: WARNING: Inline literal start-string without end-string.
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/boundary_options.rst:120: WARNING: Footnote [#] is not referenced.
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/installing.rst:447: WARNING: Title underline too short.
Working with an active ``conda`` environment
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/installing.rst:453: ERROR: Unexpected indentation.
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/installing.rst:454: WARNING: Block quote ends without a blank line; unexpected unindent.
/usr/lib/python3.12/site-packages/boututils/__init__.py:docstring of boututils:1: WARNING: duplicate object description of boututils, other instance in _apidoc/boututils, use :no-index: for one of them
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/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/running_bout.rst:462: WARNING: Literal block expected; none found.
none found
pickling environment... done
checking consistency... done
preparing documents... WARNING: unsupported theme option 'repository_url' given
WARNING: unsupported theme option 'repository_branch' given
WARNING: unsupported theme option 'path_to_docs' given
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WARNING: unsupported theme option 'use_repository_button' given
WARNING: unsupported theme option 'use_issues_button' given
WARNING: unsupported theme option 'home_page_in_toc' given
done
copying assets... copying static files... done
copying extra files... done
done
writing output... [ 2%] _apidoc/boutdata
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/usr/lib/python3.12/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:14: WARNING: Unparseable C++ cross-reference: 'numpy.random.Generator.normal'
Error in cross-reference.
If shorthand ref:
Invalid C++ declaration: Expected end of definition. [error at 5]
numpy.random.Generator.normal
-----^
If full function ref:
Error when parsing function declaration.
If the function has no return type:
Error in declarator or parameters-and-qualifiers
Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5]
numpy.random.Generator.normal
-----^
If the function has a return type:
Error in declarator or parameters-and-qualifiers
If pointer to member declarator:
Invalid C++ declaration: Expected identifier in nested name. [error at 5]
numpy.random.Generator.normal
-----^
If declarator-id:
Invalid C++ declaration: Expected identifier in nested name. [error at 5]
numpy.random.Generator.normal
-----^
/usr/lib/python3.12/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:14: WARNING: Unparseable C++ cross-reference: 'numpy.random.Generator'
Error in cross-reference.
If shorthand ref:
Invalid C++ declaration: Expected end of definition. [error at 5]
numpy.random.Generator
-----^
If full function ref:
Error when parsing function declaration.
If the function has no return type:
Error in declarator or parameters-and-qualifiers
Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5]
numpy.random.Generator
-----^
If the function has a return type:
Error in declarator or parameters-and-qualifiers
If pointer to member declarator:
Invalid C++ declaration: Expected identifier in nested name. [error at 5]
numpy.random.Generator
-----^
If declarator-id:
Invalid C++ declaration: Expected identifier in nested name. [error at 5]
numpy.random.Generator
-----^
/usr/lib/python3.12/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:14: WARNING: undefined label: 'random-quick-start'
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dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 115 warnings.
The HTML pages are in docs.
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/manual && /usr/bin/cmake -E echo Generated\ HTML\ docs\ in\ file:///builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/manual/docs/index.html
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gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/manual /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/manual /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/manual/CMakeFiles/docs.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
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gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
gmake[2]: Nothing to be done for 'manual/CMakeFiles/docs.dir/build'.
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
Built target docs
gmake[1]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles 0
+ export LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
+ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
+ export PYTHONPATH=
+ PYTHONPATH=
+ '[' openmpi = mpich ']'
+ '[' openmpi = openmpi ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS='
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo x
+++ '[' -n x ']'
++++ eval 'echo ${LD_LIBRARY_PATH}'
+++++ echo /usr/lib64/openmpi/lib
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' '
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
_mlstatus=$?;
return $_mlstatus;
};
module() {
local _mlredir=0;
if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
_mlredir=0;
elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
_mlredir=1;
fi;
fi;
case " $@ " in
*'\'' --no-redirect '\''*) _mlredir=0 ;;
*'\'' --redirect '\''*) _mlredir=1 ;;
esac;
if [ $_mlredir -eq 0 ]; then
_module_raw "$@";
else
_module_raw "$@" 2>&1;
fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS='
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
_mlstatus=$?;
return $_mlstatus;
};
module() {
local _mlredir=0;
if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
_mlredir=0;
elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
_mlredir=1;
fi;
fi;
case " $@ " in
*'\'' --no-redirect '\''*) _mlredir=0 ;;
*'\'' --redirect '\''*) _mlredir=1 ;;
esac;
if [ $_mlredir -eq 0 ]; then
_module_raw "$@";
else
_module_raw "$@" 2>&1;
fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module unload mpi/openmpi-riscv64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw unload mpi/openmpi-riscv64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-riscv64
+ eval 'unset MPI_COMPILER;
unset LD_LIBRARY_PATH;
unset MPI_MAN;
MANPATH=/usr/share/man:; export MANPATH;
unset MPI_INCLUDE;
unset _LMFILES_;
unset LOADEDMODULES;
unset CMAKE_PREFIX_PATH;
PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
unset MPI_PYTHON3_SITEARCH;
unset MPI_HOME;
unset MPI_FORTRAN_MOD_DIR;
unset __MODULES_LMALTNAME;
unset __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH;
unset MPI_SUFFIX;
unset MPI_SYSCONFIG;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
unset MPI_LIB;
PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
unset MPI_BIN;
test 0;'
++ unset MPI_COMPILER
++ unset LD_LIBRARY_PATH
++ unset MPI_MAN
++ MANPATH=/usr/share/man:
++ export MANPATH
++ unset MPI_INCLUDE
++ unset _LMFILES_
++ unset LOADEDMODULES
++ unset CMAKE_PREFIX_PATH
++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ unset MPI_PYTHON3_SITEARCH
++ unset MPI_HOME
++ unset MPI_FORTRAN_MOD_DIR
++ unset __MODULES_LMALTNAME
++ unset __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:1
++ export __MODULES_SHARE_MANPATH
++ unset MPI_SUFFIX
++ unset MPI_SYSCONFIG
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ unset MPI_LIB
++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ unset MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ for mpi in openmpi mpich
+ '[' mpich = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS='
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
_mlstatus=$?;
return $_mlstatus;
};
module() {
local _mlredir=0;
if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
_mlredir=0;
elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
_mlredir=1;
fi;
fi;
case " $@ " in
*'\'' --no-redirect '\''*) _mlredir=0 ;;
*'\'' --redirect '\''*) _mlredir=1 ;;
esac;
if [ $_mlredir -eq 0 ]; then
_module_raw "$@";
else
_module_raw "$@" 2>&1;
fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
LOADEDMODULES=; export LOADEDMODULES;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS='
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
_mlstatus=$?;
return $_mlstatus;
};
module() {
local _mlredir=0;
if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
_mlredir=0;
elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
_mlredir=1;
fi;
fi;
case " $@ " in
*'\'' --no-redirect '\''*) _mlredir=0 ;;
*'\'' --redirect '\''*) _mlredir=1 ;;
esac;
if [ $_mlredir -eq 0 ]; then
_module_raw "$@";
else
_module_raw "$@" 2>&1;
fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
LOADEDMODULES=; export LOADEDMODULES;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ LOADEDMODULES=
++++ export LOADEDMODULES
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module load mpi/mpich-riscv64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw load mpi/mpich-riscv64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-riscv64
+ eval 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib; export LD_LIBRARY_PATH;
MPI_COMPILER=mpich-riscv64; export MPI_COMPILER;
MANPATH=/usr/share/man/mpich-riscv64:/usr/share/man:; export MANPATH;
MPI_INCLUDE=/usr/include/mpich-riscv64; export MPI_INCLUDE;
MPI_MAN=/usr/share/man/mpich-riscv64; export MPI_MAN;
MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON_SITEARCH;
_LMFILES_=/usr/share/modulefiles/mpi/mpich-riscv64; export _LMFILES_;
LOADEDMODULES=mpi/mpich-riscv64; export LOADEDMODULES;
PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
MPI_PYTHON3_SITEARCH=/usr/lib64/python3.12/site-packages/mpich; export MPI_PYTHON3_SITEARCH;
MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich; export MPI_FORTRAN_MOD_DIR;
MPI_HOME=/usr/lib64/mpich; export MPI_HOME;
__MODULES_LMCONFLICT=mpi/mpich-riscv64\&mpi; export __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH;
MPI_SYSCONFIG=/etc/mpich-riscv64; export MPI_SYSCONFIG;
MPI_SUFFIX=_mpich; export MPI_SUFFIX;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON2_SITEARCH;
MPI_LIB=/usr/lib64/mpich/lib; export MPI_LIB;
PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
MPI_BIN=/usr/lib64/mpich/bin; export MPI_BIN;
test 0;'
++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib
++ export LD_LIBRARY_PATH
++ MPI_COMPILER=mpich-riscv64
++ export MPI_COMPILER
++ MANPATH=/usr/share/man/mpich-riscv64:/usr/share/man:
++ export MANPATH
++ MPI_INCLUDE=/usr/include/mpich-riscv64
++ export MPI_INCLUDE
++ MPI_MAN=/usr/share/man/mpich-riscv64
++ export MPI_MAN
++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich'
++ export MPI_PYTHON_SITEARCH
++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-riscv64
++ export _LMFILES_
++ LOADEDMODULES=mpi/mpich-riscv64
++ export LOADEDMODULES
++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.12/site-packages/mpich
++ export MPI_PYTHON3_SITEARCH
++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich
++ export MPI_FORTRAN_MOD_DIR
++ MPI_HOME=/usr/lib64/mpich
++ export MPI_HOME
++ __MODULES_LMCONFLICT='mpi/mpich-riscv64&mpi'
++ export __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:2
++ export __MODULES_SHARE_MANPATH
++ MPI_SYSCONFIG=/etc/mpich-riscv64
++ export MPI_SYSCONFIG
++ MPI_SUFFIX=_mpich
++ export MPI_SUFFIX
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich'
++ export MPI_PYTHON2_SITEARCH
++ MPI_LIB=/usr/lib64/mpich/lib
++ export MPI_LIB
++ PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ MPI_BIN=/usr/lib64/mpich/bin
++ export MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ export 'CFLAGS=-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer'
+ CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer'
+ CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer'
+ export CFLAGS
+ CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=mpicc
+ export CC
+ CXX=mpicxx
+ export CXX
+ /usr/bin/cmake -S . -B build_mpich -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBOUT_USE_FFTW=ON -DBOUT_USE_NETCDF=ON -DBOUT_USE_SCOREP=OFF -DBOUT_USE_SYSTEM_MPARK_VARIANT=ON -DBOUT_USE_LAPACK=ON -DBOUT_USE_NLS=ON -DBOUT_USE_SYSTEM_FMT=ON -DBOUT_USE_UUID_SYSTEM_GENERATOR=ON -DCMAKE_INSTALL_PREFIX=/ -DCMAKE_INSTALL_LIBDIR=/usr/lib64/mpich/lib -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin -DCMAKE_INSTALL_INCLUDEDIR=/usr/include/mpich-riscv64/bout++/ -DCMAKE_INSTALL_DATAROOTDIR=/usr/share -DCMAKE_INSTALL_PYTHON_SITEARCH=/usr/lib64/python3.12/site-packages/mpich -DBOUT_TEST_TIMEOUT=900 -DBOUT_BUILD_DOCS=ON -DBOUT_USE_PETSC=ON -DBOUT_USE_SUNDIALS=ON
-- Configuring BOUT++ version 5.2.0
-- The CXX compiler identification is GNU 13.2.1
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/lib64/mpich/bin/mpicxx - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Python3: /usr/bin/python3.12 (found version "3.12.0") found components: Interpreter
-- Could NOT find ClangFormat (missing: ClangFormat_BIN)
CMake Warning (dev) at CMakeLists.txt:391 (message):
'src/field/generated_fieldops.cxx' will not be regenerated when you make
changes to either 'src/field/gen_fieldops.py' or
'src/field/gen_fieldops.jinja'. This is because either Python3 or
clang-format is missing (see above messages for more information) or
BOUT_GENERATE_FIELDOPS is OFF (current value: OFF). This warning is only
important for BOUT++ developers and can otherwise be safely ignored.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found Python: /usr/bin/python3.12 (found suitable version "3.12.0", minimum required is "3.6") found components: Interpreter Development Development.Module Development.Embed
-- Found Numpy: /usr/include (found version "1.26.0")
-- Found Cython: TRUE (found version "3.0.6")
-- Found Bash: /usr/bin/bash (found version "5.2.26")
-- Building BOUT++ Python interface
-- Found MPI_CXX: /usr/lib64/mpich/bin/mpicxx (found version "4.0")
-- Found MPI: TRUE (found version "4.0")
-- Enable OpenMP: OFF
-- HYPRE support: OFF
-- Found PkgConfig: /usr/bin/pkg-config (found version "1.9.5")
-- Checking for one of the modules 'PETSc>3.4.0;petsc>3.4.0'
-- Found PETSc: /usr/include/mpich-riscv64/petsc
-- PETSc support: ON
-- Using external mpark.variant
-- Using external fmt
-- PVODE support: ON
-- Found netCDF: /usr/lib64/libnetcdf.so (found version "4.9.2")
-- Found netCDFCxx version 4.3.1
-- Found netCDFCxx: /usr/lib64/libnetcdf_c++4.so (found version "4.3.1")
-- NetCDF support: ON
-- Found FFTW: /usr/lib64/libfftw3.so
-- FFTW support: ON
-- Looking for sgemm_
-- Looking for sgemm_ - not found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- Found BLAS: /usr/lib64/libflexiblas.so
-- Looking for cheev_
-- Looking for cheev_ - found
-- Found LAPACK: /usr/lib64/libflexiblas.so;-lm;-ldl
-- LAPACK support: TRUE
-- SLEPc support: OFF
-- SUNDIALS support: ON
-- Found Gettext: /usr/bin/msgmerge (found version "0.22")
-- Found Intl: built in to C library
-- libuuid not found, using fallback UUID generator
-- UUID_SYSTEM_GENERATOR: FALSE
-- Enable coverage: OFF
-- Git revision: Unknown
-- Performing Test HAS_FLAG__Wnull_dereference
-- Performing Test HAS_FLAG__Wnull_dereference - Success
-- Warning flag is supported by compiler: -Wnull-dereference
-- Found negative flag: -Wno-cast-function-type
replaced with -Wcast-function-type
-- Performing Test HAS_FLAG__Wno_cast_function_type
-- Performing Test HAS_FLAG__Wno_cast_function_type - Success
-- Warning flag is supported by compiler: -Wno-cast-function-type
-- Runtime checking level: CHECK=2
-- Message stack: BOUT_USE_MSGSTACK=ON
-- Extra debug output: BOUT_USE_OUTPUT_DEBUG=OFF
-- Signal handling: BOUT_USE_SIGNAL=ON
-- Output coloring: BOUT_USE_COLOR=ON
-- Field name tracking: BOUT_USE_TRACK=ON
-- Signalling floating point exceptions: BOUT_USE_SIGFPE=OFF
-- Enable backtrace: BOUT_USE_BACKTRACE=ON
-- Performing Test HAS_PRETTY_FUNCTION
-- Performing Test HAS_PRETTY_FUNCTION - Success
-- Setting build type to 'RelWithDebInfo' as none was specified.
CMake Deprecation Warning at externalpackages/googletest/CMakeLists.txt:4 (cmake_minimum_required):
Compatibility with CMake < 3.5 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
-- The C compiler identification is GNU 13.2.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/lib64/mpich/bin/mpicc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
CMake Deprecation Warning at externalpackages/googletest/googlemock/CMakeLists.txt:45 (cmake_minimum_required):
Compatibility with CMake < 3.5 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
CMake Deprecation Warning at externalpackages/googletest/googletest/CMakeLists.txt:56 (cmake_minimum_required):
Compatibility with CMake < 3.5 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
-- Found Python: /usr/bin/python3.12 (found version "3.12.0") found components: Interpreter
-- Not building test test-laplace-hypre3d, requirement not met: BOUT_HAS_HYPRE
-- Not building test test-laplacexy2-hypre, requirement not met: BOUT_HAS_HYPRE
-- Not building test test-slepc-solver, requirement not met: BOUT_HAS_SLEPC
-- Not building test MMS-advection-arakawa, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-advection-central, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-advection-upwind, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-advection-weno3, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-diffusion2, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-hw, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-laplace, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-advection, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-d2dx2, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-d2dz2, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-diffusion, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-time, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-time-petsc, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building example test_laplacexy_hypre, requirement not met: BOUT_HAS_HYPRE
-- Found Doxygen: /usr/bin/doxygen (found version "1.10.0") found components: doxygen dot
-- Found Sphinx: /usr/bin/sphinx-build
--------------------------------
BOUT++ Configuration Summary
--------------------------------
Bundled PVODE support : ON
PETSc support : ON
SLEPc support : OFF
SUNDIALS support : ON
HYPRE support : OFF
NetCDF support : ON
FFTW support : ON
LAPACK support : TRUE
OpenMP support : OFF
Natural language support : ON
ScoreP support : OFF
System UUID generator : FALSE
Extra debug output : OFF
Runtime error check level: 2
Signal handling : ON
Output coloring : ON
Field name tracking : ON
Floating point exceptions: OFF
Backtrace enabled : ON
RAJA enabled : OFF
Umpire enabled : OFF
Caliper enabled : OFF
CUDA enabled : OFF
Metric type : 2D
Python API support : ON
Sanitizers enabled : None
=== Python ===
Make sure that the tools/pylib directory is in your PYTHONPATH
e.g. by adding to your ~/.bashrc file
export PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib:/builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib:$PYTHONPATH
*** Now run `cmake --build /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich` to compile BOUT++ ***
-- Configuring done (1738.2s)
-- Generating done (154.2s)
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_CXX_FLAGS_RELEASE
CMAKE_C_FLAGS_RELEASE
CMAKE_Fortran_FLAGS_RELEASE
CMAKE_INSTALL_DO_STRIP
INCLUDE_INSTALL_DIR
LIB_INSTALL_DIR
LIB_SUFFIX
SHARE_INSTALL_PREFIX
SYSCONF_INSTALL_DIR
-- Build files have been written to: /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich
+ /usr/bin/cmake --build build_mpich -j8 --verbose
Change Dir: '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich'
Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j8
/usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich//CMakeFiles/progress.marks
/usr/bin/gmake -f CMakeFiles/Makefile2 all
gmake[1]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich'
/usr/bin/gmake -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/depend
/usr/bin/gmake -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/depend
/usr/bin/gmake -f CMakeFiles/mofiles.dir/build.make CMakeFiles/mofiles.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE/CMakeFiles/pvpre.dir/DependInfo.cmake "--color="
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles/mofiles.dir/DependInfo.cmake "--color="
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE/CMakeFiles/pvode.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich'
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich'
/usr/bin/gmake -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/build
/usr/bin/gmake -f CMakeFiles/mofiles.dir/build.make CMakeFiles/mofiles.dir/build
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich'
/usr/bin/gmake -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich'
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich'
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich'
[ 0%] Generating locale/de/libbout.gmo, _mo_file_de
cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/locale/de/
[ 0%] Generating locale/es/libbout.gmo, _mo_file_es
[ 2%] Generating locale/fr/libbout.gmo, _mo_file_fr
cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/locale/es/
[ 2%] Building CXX object externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o
[ 2%] Generating locale/zh_TW/libbout.gmo, _mo_file_zh_TW
cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/locale/fr/
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvpre_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o -MF CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o.d -o CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/precon/pvbbdpre.cpp
[ 5%] Building CXX object externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/locale/zh_TW/
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvpre_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o -MF CMakeFiles/pvpre.dir/precon/band.cpp.o.d -o CMakeFiles/pvpre.dir/precon/band.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/precon/band.cpp
[ 5%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o
[ 5%] Generating locale/zh_CN/libbout.gmo, _mo_file_zh_CN
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o -MF CMakeFiles/pvode.dir/source/cvode.cpp.o.d -o CMakeFiles/pvode.dir/source/cvode.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp
cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/locale/zh_CN/
cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/locale/de/libbout.gmo /builddir/build/BUILD/BOUT++-v5.1.0/locale/de/libbout.po
cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/locale/zh_TW/libbout.gmo /builddir/build/BUILD/BOUT++-v5.1.0/locale/zh_TW/libbout.po
cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/locale/fr/libbout.gmo /builddir/build/BUILD/BOUT++-v5.1.0/locale/fr/libbout.po
cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/locale/es/libbout.gmo /builddir/build/BUILD/BOUT++-v5.1.0/locale/es/libbout.po
cd /builddir/build/BUILD/BOUT++-v5.1.0 && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/locale/zh_CN/libbout.gmo /builddir/build/BUILD/BOUT++-v5.1.0/locale/zh_CN/libbout.po
[ 5%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o -MF CMakeFiles/pvode.dir/source/nvector.cpp.o.d -o CMakeFiles/pvode.dir/source/nvector.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp
[ 8%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o -MF CMakeFiles/pvode.dir/source/llnlmath.cpp.o.d -o CMakeFiles/pvode.dir/source/llnlmath.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/llnlmath.cpp
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich'
[ 8%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o
[ 8%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o -MF CMakeFiles/pvode.dir/source/cvspgmr.cpp.o.d -o CMakeFiles/pvode.dir/source/cvspgmr.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvspgmr.cpp
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o -MF CMakeFiles/pvode.dir/source/spgmr.cpp.o.d -o CMakeFiles/pvode.dir/source/spgmr.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp
[ 8%] Built target mofiles
[ 8%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o -MF CMakeFiles/pvode.dir/source/iterativ.cpp.o.d -o CMakeFiles/pvode.dir/source/iterativ.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/iterativ.cpp
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:429: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
429 | #pragma omp parallel for reduction(+: sum)
|
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:485: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
485 | #pragma omp parallel for reduction(+: sum)
|
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:543: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
543 | #pragma omp parallel for reduction(+: sum)
|
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:565: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
565 | #pragma omp parallel for reduction(+: sum)
|
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:583: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
583 | #pragma omp parallel for
|
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:698: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
698 | #pragma omp parallel for
|
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:714: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
714 | #pragma omp parallel for
|
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:730: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
730 | #pragma omp parallel for
|
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:745: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
745 | #pragma omp parallel for
|
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:761: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
761 | #pragma omp parallel for
|
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:777: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
777 | #pragma omp parallel for
|
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:793: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
793 | #pragma omp parallel for
|
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:809: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
809 | #pragma omp parallel for
|
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:824: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
824 | #pragma omp parallel for
|
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:831: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
831 | #pragma omp parallel for
|
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:837: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
837 | #pragma omp parallel for
|
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:850: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
850 | #pragma omp parallel for
|
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp: In function ‘void pvode::N_VLinearSum(real, N_Vector, real, N_Vector, N_Vector)’:
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:189:12: warning: unused variable ‘v’ [-Wunused-variable]
189 | N_Vector v, v1, v2;
| ^
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp: In function ‘pvode::real pvode::N_VWL2Norm(N_Vector, N_Vector)’:
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/nvector.cpp:533:14: warning: variable ‘N_global’ set but not used [-Wunused-but-set-variable]
533 | integer N, N_global;
| ^~~~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp: In function ‘int pvode::SpgmrSolve(SpgmrMem, void*, N_Vector, N_Vector, int, int, real, int, void*, N_Vector, N_Vector, ATimesFn, PSolveFn, real*, int*, int*)’:
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp:159:8: warning: unused variable ‘s_r0_norm’ [-Wunused-variable]
159 | real s_r0_norm, beta, rotation_product, r_norm, s_product, rho;
| ^~~~~~~~~
[ 11%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o -MF CMakeFiles/pvode.dir/source/cvdiag.cpp.o.d -o CMakeFiles/pvode.dir/source/cvdiag.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvdiag.cpp
[ 11%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o -MF CMakeFiles/pvode.dir/source/smalldense.cpp.o.d -o CMakeFiles/pvode.dir/source/smalldense.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/smalldense.cpp
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp:328:17: warning: ‘krydim’ may be used uninitialized [-Wmaybe-uninitialized]
328 | for (i=1; i <= krydim; i++) yg[i]=ZERO;
| ~~^~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp:161:36: note: ‘krydim’ was declared here
161 | int i, j, k, l, l_plus_1, l_max, krydim, ier, ntries;
| ^~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp:386:3: warning: ‘rho’ may be used uninitialized [-Wmaybe-uninitialized]
386 | if (rho < beta) {
| ^~
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/spgmr.cpp:159:62: note: ‘rho’ was declared here
159 | real s_r0_norm, beta, rotation_product, r_norm, s_product, rho;
| ^~~
[ 11%] Linking CXX shared library ../../lib/libpvpre.so
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/bin/cmake -E cmake_link_script CMakeFiles/pvpre.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libpvpre.so.1.0.0 -o ../../lib/libpvpre.so.1.0.0 CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o CMakeFiles/pvpre.dir/precon/band.cpp.o -Wl,-rpath,::::::::::::::::::::::
In function ‘int pvode::CVnlsFunctional(CVodeMem)’,
inlined from ‘int pvode::CVnls(CVodeMem, int)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1826:45,
inlined from ‘int pvode::CVStep(CVodeMem)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1358:18,
inlined from ‘int pvode::CVode(void*, real, N_Vector, real*, int)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:882:19:
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1876:49: warning: ‘delp’ may be used uninitialized [-Wmaybe-uninitialized]
1876 | if ((m==maxcor) || ((m >= 2) && (del > RDIV * delp)))
| ^
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp: In function ‘int pvode::CVode(void*, real, N_Vector, real*, int)’:
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1843:13: note: ‘delp’ was declared here
1843 | real del, delp, dcon;
| ^~~~
In function ‘int pvode::CVNewtonIteration(CVodeMem)’,
inlined from ‘int pvode::CVnlsNewton(CVodeMem, int)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1944:28,
inlined from ‘int pvode::CVnls(CVodeMem, int)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1827:41,
inlined from ‘int pvode::CVStep(CVodeMem)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1358:18,
inlined from ‘int pvode::CVode(void*, real, N_Vector, real*, int)’ at /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:882:19:
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:2021:50: warning: ‘delp’ may be used uninitialized [-Wmaybe-uninitialized]
2021 | if ((m == maxcor) || ((m >= 2) && (del > RDIV*delp))) {
| ^
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp: In function ‘int pvode::CVode(void*, real, N_Vector, real*, int)’:
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/cvode.cpp:1971:13: note: ‘delp’ was declared here
1971 | real del, delp, dcon;
| ^~~~
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/smalldense.cpp: In function ‘pvode::integer pvode::gefa(real**, integer, integer*)’:
/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/source/smalldense.cpp:82:14: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
82 | if (swap = (l != k)) {
| ~~~~~^~~~~~~~~~
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/bin/cmake -E cmake_symlink_library ../../lib/libpvpre.so.1.0.0 ../../lib/libpvpre.so.1.0.0 ../../lib/libpvpre.so
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich'
[ 11%] Built target pvpre
[ 11%] Linking CXX shared library ../../lib/libpvode.so
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/bin/cmake -E cmake_link_script CMakeFiles/pvode.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libpvode.so.1.0.0 -o ../../lib/libpvode.so.1.0.0 CMakeFiles/pvode.dir/source/cvode.cpp.o CMakeFiles/pvode.dir/source/nvector.cpp.o CMakeFiles/pvode.dir/source/llnlmath.cpp.o CMakeFiles/pvode.dir/source/cvspgmr.cpp.o CMakeFiles/pvode.dir/source/spgmr.cpp.o CMakeFiles/pvode.dir/source/iterativ.cpp.o CMakeFiles/pvode.dir/source/cvdiag.cpp.o CMakeFiles/pvode.dir/source/smalldense.cpp.o -Wl,-rpath,::::::::::::::::::::::
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/externalpackages/PVODE && /usr/bin/cmake -E cmake_symlink_library ../../lib/libpvode.so.1.0.0 ../../lib/libpvode.so.1.0.0 ../../lib/libpvode.so
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich'
[ 11%] Built target pvode
/usr/bin/gmake -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich'
[ 14%] Generating bout++-time.cxx
/usr/bin/cmake -P /builddir/build/BUILD/BOUT++-v5.1.0/cmake/GenerateDateTimeFile.cmake
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles/bout++.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich'
/usr/bin/gmake -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich'
[ 14%] Building CXX object CMakeFiles/bout++.dir/src/field/field.cxx.o
[ 17%] Building CXX object CMakeFiles/bout++.dir/src/bout++.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/bout++.cxx.o -MF CMakeFiles/bout++.dir/src/bout++.cxx.o.d -o CMakeFiles/bout++.dir/src/bout++.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/bout++.cxx
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[ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/field2d.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field.cxx.o -MF CMakeFiles/bout++.dir/src/field/field.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/field/field.cxx
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field2d.cxx.o -MF CMakeFiles/bout++.dir/src/field/field2d.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field2d.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/field/field2d.cxx
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field3d.cxx.o -MF CMakeFiles/bout++.dir/src/field/field3d.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field3d.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/field/field3d.cxx
[ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/field_data.cxx.o
[ 20%] Building CXX object CMakeFiles/bout++.dir/src/field/fieldgroup.cxx.o
[ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/field_factory.cxx.o
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[ 20%] Building CXX object CMakeFiles/bout++.dir/src/field/fieldgenerators.cxx.o
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[ 20%] Building CXX object CMakeFiles/bout++.dir/src/field/fieldperp.cxx.o
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[ 20%] Building CXX object CMakeFiles/bout++.dir/src/field/generated_fieldops.cxx.o
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[ 20%] Building CXX object CMakeFiles/bout++.dir/src/field/globalfield.cxx.o
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[ 22%] Building CXX object CMakeFiles/bout++.dir/src/field/vecops.cxx.o
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[ 25%] Building CXX object CMakeFiles/bout++.dir/src/field/where.cxx.o
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[ 25%] Building CXX object CMakeFiles/bout++.dir/src/invert/lapack_routines.cxx.o
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[ 25%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplace/impls/cyclic/cyclic_laplace.cxx.o
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[ 28%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplace/impls/iterative_parallel_tri/iterative_parallel_tri.cxx.o
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[ 28%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplace/impls/multigrid/multigrid_alg.cxx.o
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[ 31%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplace/impls/pcr/pcr.cxx.o
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[ 31%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplace/impls/pcr_thomas/pcr_thomas.cxx.o
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2_hypre.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2_hypre.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2_hypre.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplacexy2/laplacexy2_hypre.cxx
[ 40%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx
[ 40%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx
In file included from /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplacexy2/laplacexy2_hypre.cxx:1:
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invert/laplacexy2_hypre.hxx:41:2: warning: #warning LaplaceXY requires Hypre. No LaplaceXY available [-Wcpp]
41 | #warning LaplaceXY requires Hypre. No LaplaceXY available
| ^~~~~~~
[ 40%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplacexz/laplacexz.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexz/laplacexz.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexz/laplacexz.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexz/laplacexz.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/laplacexz/laplacexz.cxx
[ 40%] Building CXX object CMakeFiles/bout++.dir/src/invert/parderiv/impls/cyclic/cyclic.cxx.o
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/parderiv/invert_parderiv.cxx.o -MF CMakeFiles/bout++.dir/src/invert/parderiv/invert_parderiv.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/parderiv/invert_parderiv.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/invert/parderiv/invert_parderiv.cxx
[ 42%] Building CXX object CMakeFiles/bout++.dir/src/invert/pardiv/impls/cyclic/pardiv_cyclic.cxx.o
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[ 42%] Building CXX object CMakeFiles/bout++.dir/src/invert/pardiv/invert_pardiv.cxx.o
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/coordinates.cxx
[ 45%] Building CXX object CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/coordinates_accessor.cxx
[ 45%] Building CXX object CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/data/gridfromfile.cxx
/builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx: In function ‘void verifyNumPoints(BoundaryRegion*, int)’:
/builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:80:21: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
80 | if (mesh->firstY()) {
| ~~~~~~~~~~~~^~
In file included from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field_factory.hxx:32,
from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/boundary_standard.hxx:9,
from /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:1:
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here
441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
| ^~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:83:20: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
83 | if (mesh->lastY()) {
| ~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here
445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
| ^~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet::apply(Field3D&, BoutReal)’:
/builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:473:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
473 | val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz),
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
474 | t);
| ~~
In file included from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field_data.hxx:51,
from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field.hxx:39,
from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field2d.hxx:34,
from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/boundary_op.hxx:9,
from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/boundary_standard.hxx:6:
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:70:3: note: declared here
70 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
| ^~~~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:517:33: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
517 | val = fg->generate(xnorm, TWOPI * ynorm,
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
518 | TWOPI * (zk - 0.5) / (mesh->LocalNz), t);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:70:3: note: declared here
70 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
| ^~~~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet_O3::apply(Field3D&, BoutReal)’:
/builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:978:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
978 | val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz),
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
979 | t);
| ~~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:70:3: note: declared here
70 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
| ^~~~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryDirichlet_O4::apply(Field3D&, BoutReal)’:
/builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:1444:31: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
1444 | val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz),
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1445 | t);
| ~~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:70:3: note: declared here
70 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
| ^~~~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx: In member function ‘virtual void BoundaryNeumann::apply(Field3D&, BoutReal)’:
/builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/boundary_standard.cxx:2152:33: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
2152 | val = fg->generate(xnorm, TWOPI * ynorm,
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2153 | TWOPI * (zk - 0.5) / (mesh->LocalNz), t);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:70:3: note: declared here
70 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
| ^~~~~~~~
[ 48%] Building CXX object CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/data/gridfromoptions.cxx
[ 48%] Building CXX object CMakeFiles/bout++.dir/src/mesh/difops.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/difops.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/difops.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/difops.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/difops.cxx
[ 48%] Building CXX object CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/fv_ops.cxx
[ 48%] Building CXX object CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/impls/bout/boutmesh.cxx
[ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/index_derivs.cxx
/builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/fv_ops.cxx: In function ‘void FV::communicateFluxes(Field3D&)’:
/builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/fv_ops.cxx:471:15: warning: ‘xout’ may be used uninitialized [-Wmaybe-uninitialized]
471 | mesh->wait(xout);
| ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/fv_ops.cxx:442:20: note: ‘xout’ was declared here
442 | comm_handle xin, xout;
| ^~~~
[ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/interpolation_xz.cxx
[ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/interpolation/bilinear_xz.cxx
[ 51%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/interpolation/hermite_spline_xz.cxx
[ 54%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/interpolation/hermite_spline_z.cxx
[ 54%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/interpolation/interpolation_z.cxx
In file included from /usr/include/c++/13/bits/shared_ptr.h:53,
from /usr/include/c++/13/memory:80,
from /usr/include/fmt/core.h:16,
from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/msg_stack.hxx:37,
from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/scorepwrapper.hxx:6,
from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/deriv_store.hxx:37,
from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:48,
from /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/impls/bout/boutmesh.hxx:8,
from /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/impls/bout/boutmesh.cxx:36:
In member function ‘std::__shared_ptr<_Tp, _Lp>::operator bool() const [with _Tp = ArrayData<double>; __gnu_cxx::_Lock_policy _Lp = __gnu_cxx::_S_mutex]’,
inlined from ‘bool std::operator==(const shared_ptr<_Tp>&, nullptr_t) [with _Tp = ArrayData<double>]’ at /usr/include/c++/13/bits/shared_ptr.h:562:14,
inlined from ‘bool Array<T, Backing>::empty() const [with T = double; Backing = ArrayData<double>]’ at /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/array.hxx:270:44,
inlined from ‘bool Field3D::isAllocated() const’ at /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field3d.hxx:203:48,
inlined from ‘int BoutMesh::pack_data(const std::vector<FieldData*>&, int, int, int, int, BoutReal*)’ at /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/impls/bout/boutmesh.cxx:2256:7:
/usr/include/c++/13/bits/shared_ptr_base.h:1670:16: warning: potential null pointer dereference [-Wnull-dereference]
1670 | { return _M_ptr != nullptr; }
| ^~~~~~
In member function ‘std::__shared_ptr<_Tp, _Lp>::operator bool() const [with _Tp = ArrayData<double>; __gnu_cxx::_Lock_policy _Lp = __gnu_cxx::_S_mutex]’,
inlined from ‘bool std::operator==(const shared_ptr<_Tp>&, nullptr_t) [with _Tp = ArrayData<double>]’ at /usr/include/c++/13/bits/shared_ptr.h:562:14,
inlined from ‘bool Array<T, Backing>::empty() const [with T = double; Backing = ArrayData<double>]’ at /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/array.hxx:270:44,
inlined from ‘bool Field2D::isAllocated() const’ at /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/field2d.hxx:106:48,
inlined from ‘int BoutMesh::pack_data(const std::vector<FieldData*>&, int, int, int, int, BoutReal*)’ at /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/impls/bout/boutmesh.cxx:2267:7:
/usr/include/c++/13/bits/shared_ptr_base.h:1670:16: warning: potential null pointer dereference [-Wnull-dereference]
1670 | { return _M_ptr != nullptr; }
| ^~~~~~
[ 54%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/lagrange_4pt_xz.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/lagrange_4pt_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/lagrange_4pt_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/lagrange_4pt_xz.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/interpolation/lagrange_4pt_xz.cxx
[ 54%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/monotonic_hermite_spline_xz.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/monotonic_hermite_spline_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/monotonic_hermite_spline_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/monotonic_hermite_spline_xz.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/interpolation/monotonic_hermite_spline_xz.cxx
[ 57%] Building CXX object CMakeFiles/bout++.dir/src/mesh/mesh.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/mesh.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/mesh.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/mesh.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/mesh.cxx
[ 57%] Building CXX object CMakeFiles/bout++.dir/src/mesh/parallel/fci.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/parallel/fci.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/parallel/fci.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/parallel/fci.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/parallel/fci.cxx
[ 57%] Building CXX object CMakeFiles/bout++.dir/src/mesh/parallel/identity.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/parallel/identity.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/parallel/identity.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/parallel/identity.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/mesh/parallel/identity.cxx
[ 57%] Building CXX object CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetric.cxx.o
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[ 82%] Building CXX object CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o -MF CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/sys/expressionparser.cxx
[ 82%] Building CXX object CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o
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[ 82%] Building CXX object CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o
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[ 82%] Building CXX object CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o -MF CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/src/sys/msg_stack.cxx
/builddir/build/BUILD/BOUT++-v5.1.0/src/sys/expressionparser.cxx: In member function ‘virtual double FieldGenerator::generate(const bout::generator::Context&)’:
/builddir/build/BUILD/BOUT++-v5.1.0/src/sys/expressionparser.cxx:43:18: warning: ‘virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)’ is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
43 | return generate(ctx.x(), ctx.y(), ctx.z(), ctx.t());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/BOUT++-v5.1.0/src/sys/expressionparser.cxx:25:
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/sys/expressionparser.hxx:70:3: note: declared here
70 | generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
| ^~~~~~~~
[ 85%] Building CXX object CMakeFiles/bout++.dir/src/sys/options.cxx.o
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[ 88%] Building CXX object CMakeFiles/bout++.dir/src/sys/range.cxx.o
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[ 88%] Building CXX object CMakeFiles/bout++.dir/src/sys/slepclib.cxx.o
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In file included from /usr/include/mpich-riscv64/ncFile.h:2,
from /usr/include/mpich-riscv64/netcdf:16,
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18 | static int file_id;
| ^~~~~~~
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CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/rkf34/rkf34.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/rkf45/rkf45.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/rkgeneric.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/rkscheme.cxx.o CMakeFiles/bout++.dir/src/solver/impls/slepc/slepc.cxx.o CMakeFiles/bout++.dir/src/solver/impls/snes/snes.cxx.o "CMakeFiles/bout++.dir/src/solver/impls/split-rk/split-rk.cxx.o" CMakeFiles/bout++.dir/src/solver/solver.cxx.o CMakeFiles/bout++.dir/src/sys/bout_types.cxx.o CMakeFiles/bout++.dir/src/sys/boutcomm.cxx.o CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o CMakeFiles/bout++.dir/src/sys/derivs.cxx.o CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o CMakeFiles/bout++.dir/src/sys/options.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o CMakeFiles/bout++.dir/src/sys/output.cxx.o CMakeFiles/bout++.dir/src/sys/petsclib.cxx.o CMakeFiles/bout++.dir/src/sys/range.cxx.o CMakeFiles/bout++.dir/src/sys/slepclib.cxx.o CMakeFiles/bout++.dir/src/sys/timer.cxx.o CMakeFiles/bout++.dir/src/sys/type_name.cxx.o CMakeFiles/bout++.dir/src/sys/utils.cxx.o "CMakeFiles/bout++.dir/bout++-time.cxx.o" -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib: /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/libfmt.so.10.2.1 lib/libpvode.so.1.0.0 lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl -ldl /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libnetcdf.so /usr/lib64/mpich/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/mpich/lib/libsundials_cvode.so.5.8.0 /usr/lib64/mpich/lib/libsundials_ida.so.5.8.0 /usr/lib64/mpich/lib/libsundials_arkode.so.4.8.0
/usr/bin/cmake -E cmake_symlink_library lib/libbout++.so.5.1.0 lib/libbout++.so.5.1.0 lib/libbout++.so
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich'
[ 91%] Built target bout++
/usr/bin/gmake -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich'
[ 94%] Generating boutpp.pyx
cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build
[ 94%] Generating resolve_enum.pxd
[ 94%] Generating boutcpp.pxd
cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build
[ 94%] Generating helper.cxx
cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build
[ 94%] Generating helper.h
cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.12 generate.py boutpp.pyx.jinja /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/boutpp.pyx
cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.12 generate.py resolve_enum.pxd.jinja /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/resolve_enum.pxd
cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.12 generate.py boutcpp.pxd.jinja /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/boutcpp.pxd
cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.12 generate.py helper.cxx.jinja /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/helper.cxx
cd /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.12 generate.py helper.h.jinja /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/helper.h
[ 94%] Cythonizing python interface
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy boutpp.pyx libboutpp.pyx
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build && /usr/bin/python3.12 -m cython libboutpp.pyx --cplus -3 -X binding=True -X embedsignature=True
warning: resolve_enum.pxd:49:21: 'deflt' redeclared
warning: resolve_enum.pxd:189:24: 'Standard' redeclared
warning: resolve_enum.pxd:223:15: 'Standard' redeclared
warning: bout_options.pxd:22:21: Rvalue-reference as function argument not supported
warning: bout_options.pxd:24:32: Rvalue-reference as function argument not supported
performance hint: libboutpp.pyx:2065:5: Exception check on 'callback' will always require the GIL to be acquired.
Possible solutions:
1. Declare the function as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2. Use an 'int' return type on the function to allow an error code to be returned.
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich'
/usr/bin/gmake -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich'
[ 94%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/libboutpp.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_312_riscv64_linux_gnu_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build -I/usr/include/python3.12 -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/libboutpp.cpp.o -MF CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/libboutpp.cpp.o.d -o CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/libboutpp.cpp.o -c /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp
[ 94%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/boutexception_helper.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_312_riscv64_linux_gnu_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build -I/usr/include/python3.12 -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/boutexception_helper.cxx.o -MF CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/boutexception_helper.cxx.o.d -o CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/boutexception_helper.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/boutexception_helper.cxx
[ 97%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/helper.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_312_riscv64_linux_gnu_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build -I/usr/include/python3.12 -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/mpich-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/helper.cxx.o -MF CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/helper.cxx.o.d -o CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/helper.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/helper.cxx
In file included from /usr/include/numpy/ndarraytypes.h:1929,
from /usr/include/numpy/ndarrayobject.h:12,
from /usr/include/numpy/arrayobject.h:5,
from /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:1233:
/usr/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:40866:46: warning: ‘__pyx_obj_9libboutpp_Vector2D* __pyx_f_9libboutpp_v2dFromObj(Vector2D)’ defined but not used [-Wunused-function]
40866 | static struct __pyx_obj_9libboutpp_Vector2D *__pyx_f_9libboutpp_v2dFromObj(Vector2D __pyx_v_i) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp: In function ‘CELL_LOC __pyx_f_12resolve_enum_resolve_cell_loc(PyObject*)’:
/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:9306:10: warning: ‘__pyx_r’ may be used uninitialized [-Wmaybe-uninitialized]
9306 | return __pyx_r;
| ^~~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:8949:12: note: ‘__pyx_r’ was declared here
8949 | CELL_LOC __pyx_r;
| ^~~~~~~
In function ‘PyObject* __pyx_pf_9libboutpp_54bracket(PyObject*, __pyx_obj_9libboutpp_Field3D*, __pyx_obj_9libboutpp_Field3D*, PyObject*, PyObject*)’,
inlined from ‘PyObject* __pyx_pw_9libboutpp_55bracket(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:64888:42:
/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:64982:65: warning: ‘__pyx_r’ may be used uninitialized [-Wmaybe-uninitialized]
64982 | __pyx_t_1 = ((PyObject *)__pyx_f_9libboutpp_f3dFromObj(bracket((__pyx_v_a->cobj[0]), (__pyx_v_b->cobj[0]), __pyx_v_method_, __pyx_v_outloc_))); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 2989, __pyx_L1_error)
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp: In function ‘PyObject* __pyx_pw_9libboutpp_55bracket(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:10817:18: note: ‘__pyx_r’ was declared here
10817 | BRACKET_METHOD __pyx_r;
| ^~~~~~~
[ 97%] Linking CXX shared library libboutpp.cpython-312-riscv64-linux-gnu.so
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E cmake_link_script CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libboutpp.cpython-312-riscv64-linux-gnu.so -o libboutpp.cpython-312-riscv64-linux-gnu.so "CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/libboutpp.cpp.o" "CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/helper.cxx.o" "CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/boutexception_helper.cxx.o" -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib: ../../../lib/libbout++.so.5.1.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/mpich/lib/libsundials_cvode.so.5.8.0 /usr/lib64/mpich/lib/libsundials_ida.so.5.8.0 /usr/lib64/mpich/lib/libsundials_arkode.so.4.8.0 -ldl
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich'
[ 97%] Built target boutpp.cpython-312-riscv64-linux-gnu
/usr/bin/gmake -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich'
/usr/bin/gmake -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich'
[100%] Building python interface
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpython-312-riscv64-linux-gnu.so /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/../boutpp/libboutpp.cpython-312-riscv64-linux-gnu.so
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build/boutpp.py /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/_boutpp_build/../boutpp/__init__.py
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich'
[100%] Built target boutpp
gmake[1]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles 0
+ PYPA=
+ LDPA=/usr/lib64/mpich/lib
++ pwd
+ export PYTHONPATH=:/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/
+ PYTHONPATH=:/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/
++ pwd
+ export LD_LIBRARY_PATH=/usr/lib64/mpich/lib:/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib/
+ LD_LIBRARY_PATH=/usr/lib64/mpich/lib:/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/lib/
+ /usr/bin/cmake --build build_mpich/manual -j8 --verbose
Change Dir: '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/manual'
Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j8
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich --check-build-system CMakeFiles/Makefile.cmake 0
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/manual//CMakeFiles/progress.marks
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/gmake -f CMakeFiles/Makefile2 manual/all
gmake[1]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich'
/usr/bin/gmake -f manual/CMakeFiles/sphinx-html.dir/build.make manual/CMakeFiles/sphinx-html.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/manual /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/manual /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/manual/CMakeFiles/sphinx-html.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich'
/usr/bin/gmake -f manual/CMakeFiles/sphinx-html.dir/build.make manual/CMakeFiles/sphinx-html.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich'
Generating HTML documentation with Sphinx in /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/manual/docs
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/manual && /usr/bin/sphinx-build -b html /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/manual/docs
Running Sphinx v7.2.6
breathe module not installed
recommonmark module not installed
making output directory... done
building [mo]: targets for 0 po files that are out of date
writing output...
building [html]: targets for 46 source files that are out of date
updating environment: [new config] 46 added, 0 changed, 0 removed
reading sources... [ 2%] _apidoc/boutdata
reading sources... [ 4%] _apidoc/boutpp
reading sources... [ 7%] _apidoc/boututils
No mlab available
reading sources... [ 9%] _apidoc/zoidberg
reading sources... [ 11%] api_reference
reading sources... [ 13%] developer_docs/code_layout
reading sources... [ 15%] developer_docs/contributing
reading sources... [ 17%] developer_docs/data_types
reading sources... [ 20%] developer_docs/file_io
reading sources... [ 22%] developer_docs/git_basics
reading sources... [ 24%] developer_docs/mesh
reading sources... [ 26%] developer_docs/natural_language
reading sources... [ 28%] developer_docs/performance_profiling
reading sources... [ 30%] developer_docs/petsc_interface
reading sources... [ 33%] index
reading sources... [ 35%] user_docs/BOUT_Gradperp_op
reading sources... [ 37%] user_docs/advanced_install
reading sources... [ 39%] user_docs/algebraic_operators
reading sources... [ 41%] user_docs/boundary_options
reading sources... [ 43%] user_docs/bout_functions_for_physics
reading sources... [ 46%] user_docs/bout_options
reading sources... [ 48%] user_docs/coordinates
reading sources... [ 50%] user_docs/differential_operators
reading sources... [ 52%] user_docs/eigenvalue_solver
reading sources... [ 54%] user_docs/gpu_support
reading sources... [ 57%] user_docs/input_grids
reading sources... [ 59%] user_docs/installing
reading sources... [ 61%] user_docs/introduction
reading sources... [ 63%] user_docs/invertable_operator
reading sources... [ 65%] user_docs/laplacian
reading sources... [ 67%] user_docs/makefiles
reading sources... [ 70%] user_docs/new_in_v5
reading sources... [ 72%] user_docs/nonlocal
reading sources... [ 74%] user_docs/output_and_post
reading sources... [ 76%] user_docs/parallel-transforms
reading sources... [ 78%] user_docs/petsc
reading sources... [ 80%] user_docs/physics_models
reading sources... [ 83%] user_docs/preconditioning
reading sources... [ 85%] user_docs/python
reading sources... [ 87%] user_docs/python_boutpp
reading sources... [ 89%] user_docs/quickstart
reading sources... [ 91%] user_docs/running_bout
reading sources... [ 93%] user_docs/staggered_grids
reading sources... [ 96%] user_docs/testing
reading sources... [ 98%] user_docs/time_integration
reading sources... [100%] user_docs/variable_init
/usr/lib/python3.12/site-packages/boutdata/collect.py:docstring of boutdata.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :no-index: for one of them
WARNING: autodoc: failed to import module 'mayavi2' from module 'boutdata'; the following exception was raised:
No module named 'enthought'
/usr/lib/python3.12/site-packages/boutdata/restart.py:docstring of boutdata.restart.shift_v3_to_v4:5: ERROR: Unexpected indentation.
/usr/lib/python3.12/site-packages/boutdata/restart.py:docstring of boutdata.restart.shift_v3_to_v4:6: WARNING: Block quote ends without a blank line; unexpected unindent.
/usr/lib/python3.12/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:56: WARNING: Footnote [1] is not referenced.
docstring of libboutpp.PhysicsModel:14: ERROR: Unexpected indentation.
/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/tools/pylib/boutpp/__init__.py:docstring of libboutpp.create3D:3: ERROR: Unexpected indentation.
WARNING: autodoc: failed to import module 'analyse_equil_2' from module 'boututils'; the following exception was raised:
No module named 'crosslines'
WARNING: autodoc: failed to import module 'anim' from module 'boututils'; the following exception was raised:
No module named 'tvtk'
WARNING: autodoc: failed to import module 'boutgrid' from module 'boututils'; the following exception was raised:
No module named 'tvtk'
/usr/lib/python3.12/site-packages/boututils/calculus.py:docstring of boututils.calculus.deriv2D:14: ERROR: Unexpected indentation.
WARNING: autodoc: failed to import module 'crosslines' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'efit_analyzer' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'fft_deriv' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'int_func' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'mode_structure' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'moment_xyzt' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'radial_grid' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'surface_average' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'volume_integral' from module 'boututils'; the following exception was raised:
No module named 'past'
/usr/lib/python3.12/site-packages/zoidberg/field.py:docstring of zoidberg.field.DommaschkPotentials:3: ERROR: Unexpected indentation.
looking for now-outdated files... /usr/lib/python3.12/site-packages/zoidberg/field.py:docstring of zoidberg.field.MagneticField.attributes:1: WARNING: duplicate object description of zoidberg.field.MagneticField.attributes, other instance in _apidoc/zoidberg, use :no-index: for one of them
/usr/lib/python3.12/site-packages/zoidberg/field.py:docstring of zoidberg.field.MagneticField.boundary:1: WARNING: duplicate object description of zoidberg.field.MagneticField.boundary, other instance in _apidoc/zoidberg, use :no-index: for one of them
/usr/lib/python3.12/site-packages/zoidberg/field.py:docstring of zoidberg.field.RotatingEllipse:3: ERROR: Unexpected indentation.
/usr/lib/python3.12/site-packages/zoidberg/field.py:docstring of zoidberg.field.RotatingEllipse.coil:3: ERROR: Unexpected indentation.
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/api_reference.rst:4: WARNING: toctree glob pattern '_breathe_autogen/*' didn't match any documents
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/file_io.rst:114: ERROR: Unknown interpreted text role "py".
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/performance_profiling.rst:85: WARNING: Inline literal start-string without end-string.
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/boundary_options.rst:120: WARNING: Footnote [#] is not referenced.
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/installing.rst:447: WARNING: Title underline too short.
Working with an active ``conda`` environment
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/installing.rst:453: ERROR: Unexpected indentation.
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/installing.rst:454: WARNING: Block quote ends without a blank line; unexpected unindent.
/usr/lib/python3.12/site-packages/boututils/__init__.py:docstring of boututils:1: WARNING: duplicate object description of boututils, other instance in _apidoc/boututils, use :no-index: for one of them
/usr/lib/python3.12/site-packages/boutdata/__init__.py:docstring of boutdata:1: WARNING: duplicate object description of boutdata, other instance in _apidoc/boutdata, use :no-index: for one of them
/usr/lib/python3.12/site-packages/boutdata/__init__.py:docstring of boutdata.collect.attributes:1: WARNING: duplicate object description of boutdata.attributes, other instance in _apidoc/boutdata, use :no-index: for one of them
/usr/lib/python3.12/site-packages/boutdata/__init__.py:docstring of boutdata.collect.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :no-index: for one of them
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/running_bout.rst:462: WARNING: Literal block expected; none found.
none found
pickling environment... done
checking consistency... done
preparing documents... WARNING: unsupported theme option 'repository_url' given
WARNING: unsupported theme option 'repository_branch' given
WARNING: unsupported theme option 'path_to_docs' given
WARNING: unsupported theme option 'use_edit_page_button' given
done
WARNING: unsupported theme option 'use_repository_button' given
WARNING: unsupported theme option 'use_issues_button' given
WARNING: unsupported theme option 'home_page_in_toc' given
copying assets... copying static files... done
copying extra files... done
done
writing output... [ 2%] _apidoc/boutdata
writing output... [ 4%] _apidoc/boutpp
writing output... [ 7%] _apidoc/boututils
writing output... [ 9%] _apidoc/zoidberg
writing output... [ 11%] api_reference
writing output... [ 13%] developer_docs/code_layout
writing output... [ 15%] developer_docs/contributing
writing output... [ 17%] developer_docs/data_types
writing output... [ 20%] developer_docs/file_io
writing output... [ 22%] developer_docs/git_basics
writing output... [ 24%] developer_docs/mesh
writing output... [ 26%] developer_docs/natural_language
writing output... [ 28%] developer_docs/performance_profiling
writing output... [ 30%] developer_docs/petsc_interface
writing output... [ 33%] index
writing output... [ 35%] user_docs/BOUT_Gradperp_op
writing output... [ 37%] user_docs/advanced_install
writing output... [ 39%] user_docs/algebraic_operators
writing output... [ 41%] user_docs/boundary_options
writing output... [ 43%] user_docs/bout_functions_for_physics
writing output... [ 46%] user_docs/bout_options
writing output... [ 48%] user_docs/coordinates
writing output... [ 50%] user_docs/differential_operators
writing output... [ 52%] user_docs/eigenvalue_solver
writing output... [ 54%] user_docs/gpu_support
writing output... [ 57%] user_docs/input_grids
writing output... [ 59%] user_docs/installing
writing output... [ 61%] user_docs/introduction
writing output... [ 63%] user_docs/invertable_operator
writing output... [ 65%] user_docs/laplacian
writing output... [ 67%] user_docs/makefiles
writing output... [ 70%] user_docs/new_in_v5
writing output... [ 72%] user_docs/nonlocal
writing output... [ 74%] user_docs/output_and_post
writing output... [ 76%] user_docs/parallel-transforms
writing output... [ 78%] user_docs/petsc
writing output... [ 80%] user_docs/physics_models
writing output... [ 83%] user_docs/preconditioning
writing output... [ 85%] user_docs/python
writing output... [ 87%] user_docs/python_boutpp
writing output... [ 89%] user_docs/quickstart
writing output... [ 91%] user_docs/running_bout
writing output... [ 93%] user_docs/staggered_grids
writing output... [ 96%] user_docs/testing
writing output... [ 98%] user_docs/time_integration
writing output... [100%] user_docs/variable_init
/usr/lib/python3.12/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:14: WARNING: Unparseable C++ cross-reference: 'numpy.random.Generator.normal'
Error in cross-reference.
If shorthand ref:
Invalid C++ declaration: Expected end of definition. [error at 5]
numpy.random.Generator.normal
-----^
If full function ref:
Error when parsing function declaration.
If the function has no return type:
Error in declarator or parameters-and-qualifiers
Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5]
numpy.random.Generator.normal
-----^
If the function has a return type:
Error in declarator or parameters-and-qualifiers
If pointer to member declarator:
Invalid C++ declaration: Expected identifier in nested name. [error at 5]
numpy.random.Generator.normal
-----^
If declarator-id:
Invalid C++ declaration: Expected identifier in nested name. [error at 5]
numpy.random.Generator.normal
-----^
/usr/lib/python3.12/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:14: WARNING: Unparseable C++ cross-reference: 'numpy.random.Generator'
Error in cross-reference.
If shorthand ref:
Invalid C++ declaration: Expected end of definition. [error at 5]
numpy.random.Generator
-----^
If full function ref:
Error when parsing function declaration.
If the function has no return type:
Error in declarator or parameters-and-qualifiers
Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5]
numpy.random.Generator
-----^
If the function has a return type:
Error in declarator or parameters-and-qualifiers
If pointer to member declarator:
Invalid C++ declaration: Expected identifier in nested name. [error at 5]
numpy.random.Generator
-----^
If declarator-id:
Invalid C++ declaration: Expected identifier in nested name. [error at 5]
numpy.random.Generator
-----^
/usr/lib/python3.12/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:14: WARNING: undefined label: 'random-quick-start'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:81: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:87: WARNING: unknown document: '../_breathe_autogen/file/field2d_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:93: WARNING: unknown document: '../_breathe_autogen/file/field3d_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:100: WARNING: unknown document: '../_breathe_autogen/file/field__data_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:105: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:112: WARNING: unknown document: '../_breathe_autogen/file/initialprofiles_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/vecops_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:124: WARNING: unknown document: '../_breathe_autogen/file/vector2d_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:129: WARNING: unknown document: '../_breathe_autogen/file/vector3d_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:133: WARNING: unknown document: '../_breathe_autogen/file/where_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:139: WARNING: unknown document: '../_breathe_autogen/file/fft__fftw_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:139: WARNING: unknown document: '../_breathe_autogen/file/fft_8hxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:148: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:154: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8hxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:156: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:160: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8hxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:162: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:166: WARNING: unknown document: '../_breathe_autogen/file/spt_8hxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:168: WARNING: unknown document: '../_breathe_autogen/file/spt_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:173: WARNING: unknown document: '../_breathe_autogen/file/invert__parderiv_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:181: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:183: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8hxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:187: WARNING: unknown document: '../_breathe_autogen/file/lapack__routines_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:191: WARNING: unknown document: '../_breathe_autogen/file/boundary__factory_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:195: WARNING: unknown document: '../_breathe_autogen/file/boundary__region_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:200: WARNING: unknown document: '../_breathe_autogen/file/boundary__standard_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:204: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:204: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:209: WARNING: unknown document: '../_breathe_autogen/file/interpolation_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:212: WARNING: unknown document: '../_breathe_autogen/file/mesh_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:220: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:224: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8hxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:229: WARNING: unknown document: '../_breathe_autogen/file/gyro__average_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:231: WARNING: unknown document: '../_breathe_autogen/file/smoothing_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:234: WARNING: unknown document: '../_breathe_autogen/file/sourcex_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:240: WARNING: unknown document: '../_breathe_autogen/file/solver_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:247: WARNING: unknown document: '../_breathe_autogen/file/cvode_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:251: WARNING: unknown document: '../_breathe_autogen/file/cvode_8hxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:255: WARNING: unknown document: '../_breathe_autogen/file/ida_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:259: WARNING: unknown document: '../_breathe_autogen/file/ida_8hxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:263: WARNING: unknown document: '../_breathe_autogen/file/petsc_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:266: WARNING: unknown document: '../_breathe_autogen/file/petsc_8hxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:270: WARNING: unknown document: '../_breathe_autogen/file/pvode_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:274: WARNING: unknown document: '../_breathe_autogen/file/pvode_8hxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:278: WARNING: unknown document: '../_breathe_autogen/file/boutcomm_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:280: WARNING: unknown document: '../_breathe_autogen/file/boutexception_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:283: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:283: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:289: WARNING: unknown document: '../_breathe_autogen/file/msg__stack_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:296: WARNING: unknown document: '../_breathe_autogen/file/options_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:300: WARNING: unknown document: '../_breathe_autogen/file/optionsreader_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:302: WARNING: unknown document: '../_breathe_autogen/file/output_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:304: WARNING: unknown document: '../_breathe_autogen/file/range_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:308: WARNING: unknown document: '../_breathe_autogen/file/timer_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:312: WARNING: unknown document: '../_breathe_autogen/file/utils_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:318: WARNING: unknown document: '../_breathe_autogen/file/optionparser_8hxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:320: WARNING: unknown document: '../_breathe_autogen/file/options__ini_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/code_layout.rst:322: WARNING: unknown document: '../_breathe_autogen/file/options__ini_8hxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/developer_docs/mesh.rst:31: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx'
generating indices... /builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field2d_8hxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field3d_8hxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8hxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/differential_operators.rst:530: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/differential_operators.rst:538: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/laplacian.rst:185: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx'
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/output_and_post.rst:580: WARNING: Lexing literal_block 'AppendTo[$Path,"/full/path/to/BOUT/tools/mathematicalib"]' as "mathematica" resulted in an error at token: '$'. Retrying in relaxed mode.
/builddir/build/BUILD/BOUT++-v5.1.0/manual/sphinx/user_docs/time_integration.rst:1030: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx'
genindex py-modindex done
writing additional pages... search done
copying images... [ 4%] figs/layout1.png
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copying images... [ 12%] figs/memory.png
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dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 115 warnings.
The HTML pages are in docs.
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/manual && /usr/bin/cmake -E echo Generated\ HTML\ docs\ in\ file:///builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/manual/docs/index.html
Generated HTML docs in file:///builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/manual/docs/index.html
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich'
Built target sphinx-html
/usr/bin/gmake -f manual/CMakeFiles/docs.dir/build.make manual/CMakeFiles/docs.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/manual /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/manual /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/manual/CMakeFiles/docs.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich'
/usr/bin/gmake -f manual/CMakeFiles/docs.dir/build.make manual/CMakeFiles/docs.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich'
gmake[2]: Nothing to be done for 'manual/CMakeFiles/docs.dir/build'.
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich'
Built target docs
gmake[1]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_mpich'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_mpich/CMakeFiles 0
+ export LD_LIBRARY_PATH=/usr/lib64/mpich/lib
+ LD_LIBRARY_PATH=/usr/lib64/mpich/lib
+ export PYTHONPATH=
+ PYTHONPATH=
+ '[' mpich = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS='
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo x
+++ '[' -n x ']'
++++ eval 'echo ${LD_LIBRARY_PATH}'
+++++ echo /usr/lib64/mpich/lib
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' '
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/mpich/lib
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
_mlstatus=$?;
return $_mlstatus;
};
module() {
local _mlredir=0;
if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
_mlredir=0;
elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
_mlredir=1;
fi;
fi;
case " $@ " in
*'\'' --no-redirect '\''*) _mlredir=0 ;;
*'\'' --redirect '\''*) _mlredir=1 ;;
esac;
if [ $_mlredir -eq 0 ]; then
_module_raw "$@";
else
_module_raw "$@" 2>&1;
fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS='
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
_mlstatus=$?;
return $_mlstatus;
};
module() {
local _mlredir=0;
if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
_mlredir=0;
elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
_mlredir=1;
fi;
fi;
case " $@ " in
*'\'' --no-redirect '\''*) _mlredir=0 ;;
*'\'' --redirect '\''*) _mlredir=1 ;;
esac;
if [ $_mlredir -eq 0 ]; then
_module_raw "$@";
else
_module_raw "$@" 2>&1;
fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module unload mpi/mpich-riscv64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw unload mpi/mpich-riscv64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-riscv64
+ eval 'unset LD_LIBRARY_PATH;
unset MPI_COMPILER;
MANPATH=/usr/share/man:; export MANPATH;
unset MPI_INCLUDE;
unset MPI_MAN;
unset MPI_PYTHON_SITEARCH;
unset _LMFILES_;
unset LOADEDMODULES;
PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
unset MPI_PYTHON3_SITEARCH;
unset MPI_FORTRAN_MOD_DIR;
unset MPI_HOME;
unset __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH;
unset MPI_SYSCONFIG;
unset MPI_SUFFIX;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
unset MPI_PYTHON2_SITEARCH;
unset MPI_LIB;
PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
unset MPI_BIN;
test 0;'
++ unset LD_LIBRARY_PATH
++ unset MPI_COMPILER
++ MANPATH=/usr/share/man:
++ export MANPATH
++ unset MPI_INCLUDE
++ unset MPI_MAN
++ unset MPI_PYTHON_SITEARCH
++ unset _LMFILES_
++ unset LOADEDMODULES
++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ unset MPI_PYTHON3_SITEARCH
++ unset MPI_FORTRAN_MOD_DIR
++ unset MPI_HOME
++ unset __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:1
++ export __MODULES_SHARE_MANPATH
++ unset MPI_SYSCONFIG
++ unset MPI_SUFFIX
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ unset MPI_PYTHON2_SITEARCH
++ unset MPI_LIB
++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ unset MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.L8SxtF
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64
++ dirname /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64
+ CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd BOUT++-v5.1.0
+ for mpi in openmpi mpich
+ '[' openmpi = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS='
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
_mlstatus=$?;
return $_mlstatus;
};
module() {
local _mlredir=0;
if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
_mlredir=0;
elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
_mlredir=1;
fi;
fi;
case " $@ " in
*'\'' --no-redirect '\''*) _mlredir=0 ;;
*'\'' --redirect '\''*) _mlredir=1 ;;
esac;
if [ $_mlredir -eq 0 ]; then
_module_raw "$@";
else
_module_raw "$@" 2>&1;
fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS='
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
_mlstatus=$?;
return $_mlstatus;
};
module() {
local _mlredir=0;
if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
_mlredir=0;
elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
_mlredir=1;
fi;
fi;
case " $@ " in
*'\'' --no-redirect '\''*) _mlredir=0 ;;
*'\'' --redirect '\''*) _mlredir=1 ;;
esac;
if [ $_mlredir -eq 0 ]; then
_module_raw "$@";
else
_module_raw "$@" 2>&1;
fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module load mpi/openmpi-riscv64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw load mpi/openmpi-riscv64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-riscv64
+ eval 'MPI_COMPILER=openmpi-riscv64; export MPI_COMPILER;
LD_LIBRARY_PATH=/usr/lib64/openmpi/lib; export LD_LIBRARY_PATH;
MPI_MAN=/usr/share/man/openmpi-riscv64; export MPI_MAN;
MANPATH=/usr/share/man/openmpi-riscv64:/usr/share/man:; export MANPATH;
MPI_INCLUDE=/usr/include/openmpi-riscv64; export MPI_INCLUDE;
_LMFILES_=/usr/share/modulefiles/mpi/openmpi-riscv64; export _LMFILES_;
LOADEDMODULES=mpi/openmpi-riscv64; export LOADEDMODULES;
CMAKE_PREFIX_PATH=/usr/lib64/openmpi; export CMAKE_PREFIX_PATH;
PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
MPI_PYTHON3_SITEARCH=/usr/lib64/python3.12/site-packages/openmpi; export MPI_PYTHON3_SITEARCH;
MPI_HOME=/usr/lib64/openmpi; export MPI_HOME;
MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi; export MPI_FORTRAN_MOD_DIR;
__MODULES_LMALTNAME=mpi/openmpi-riscv64\&as\|mpi/default\&as\|mpi/latest; export __MODULES_LMALTNAME;
__MODULES_LMCONFLICT=mpi/openmpi-riscv64\&mpi; export __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH;
MPI_SUFFIX=_openmpi; export MPI_SUFFIX;
MPI_SYSCONFIG=/etc/openmpi-riscv64; export MPI_SYSCONFIG;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
MPI_LIB=/usr/lib64/openmpi/lib; export MPI_LIB;
PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
MPI_BIN=/usr/lib64/openmpi/bin; export MPI_BIN;
test 0;'
++ MPI_COMPILER=openmpi-riscv64
++ export MPI_COMPILER
++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
++ export LD_LIBRARY_PATH
++ MPI_MAN=/usr/share/man/openmpi-riscv64
++ export MPI_MAN
++ MANPATH=/usr/share/man/openmpi-riscv64:/usr/share/man:
++ export MANPATH
++ MPI_INCLUDE=/usr/include/openmpi-riscv64
++ export MPI_INCLUDE
++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-riscv64
++ export _LMFILES_
++ LOADEDMODULES=mpi/openmpi-riscv64
++ export LOADEDMODULES
++ CMAKE_PREFIX_PATH=/usr/lib64/openmpi
++ export CMAKE_PREFIX_PATH
++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.12/site-packages/openmpi
++ export MPI_PYTHON3_SITEARCH
++ MPI_HOME=/usr/lib64/openmpi
++ export MPI_HOME
++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi
++ export MPI_FORTRAN_MOD_DIR
++ __MODULES_LMALTNAME='mpi/openmpi-riscv64&as|mpi/default&as|mpi/latest'
++ export __MODULES_LMALTNAME
++ __MODULES_LMCONFLICT='mpi/openmpi-riscv64&mpi'
++ export __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:2
++ export __MODULES_SHARE_MANPATH
++ MPI_SUFFIX=_openmpi
++ export MPI_SUFFIX
++ MPI_SYSCONFIG=/etc/openmpi-riscv64
++ export MPI_SYSCONFIG
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ MPI_LIB=/usr/lib64/openmpi/lib
++ export MPI_LIB
++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ MPI_BIN=/usr/lib64/openmpi/bin
++ export MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ export PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe
+ PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe
+ DESTDIR=/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64
+ /usr/bin/cmake --install build_openmpi
-- Install configuration: "RelWithDebInfo"
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/python3.12/site-packages/openmpi/boutpp/libboutpp.cpython-312-riscv64-linux-gnu.so
-- Set runtime path of "/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/python3.12/site-packages/openmpi/boutpp/libboutpp.cpython-312-riscv64-linux-gnu.so" to "///usr/lib64/openmpi/lib"
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/python3.12/site-packages/openmpi/boutpp/__init__.py
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/openmpi/lib/libpvode.so.1.0.0
-- Set runtime path of "/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/openmpi/lib/libpvode.so.1.0.0" to "///usr/lib64/openmpi/lib"
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/openmpi/lib/libpvode.so
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/openmpi/lib/libpvpre.so.1.0.0
-- Set runtime path of "/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/openmpi/lib/libpvpre.so.1.0.0" to "///usr/lib64/openmpi/lib"
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/openmpi/lib/libpvpre.so
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/pvode
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/pvode/llnltyps.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/pvode/cvode.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/pvode/iterativ.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/pvode/band.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/pvode/nvector.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/pvode/cvdiag.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/pvode/cvspgmr.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/pvode/smalldense.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/pvode/vector.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/pvode/pvbbdpre.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/pvode/llnlmath.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/pvode/spgmr.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/openmpi/lib/cmake/PVODE/PVODETargets.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/openmpi/lib/cmake/PVODE/PVODETargets-relwithdebinfo.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/locale/es/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/locale/de/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/locale/fr/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/locale/zh_CN/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/locale/zh_TW/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/openmpi/lib/libbout++.so.5.1.0
-- Set runtime path of "/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/openmpi/lib/libbout++.so.5.1.0" to "///usr/lib64/openmpi/lib"
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/openmpi/lib/libbout++.so
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/stencils.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/invert_parderiv.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/invert_laplace.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/boutcomm.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/boundary_factory.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/options_netcdf.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/optionsreader.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/cyclic_reduction.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/difops.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/sourcex.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/field_data.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/gyro_average.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/solverfactory.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/array.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/stencils.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/invert_parderiv.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/invert_laplace.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/coordinates.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/boutcomm.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/boundary_factory.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/generic_factory.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/options_netcdf.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/hyprelib.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/optionsreader.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/mpi_wrapper.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/field_accessor.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/sundials_backports.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/output_bout_types.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/cyclic_reduction.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/invert
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/invert/laplacexy2_hypre.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/invert/laplacexz.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/invert/laplacexy2.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/invert/laplacexy.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/difops.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/sourcex.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/expr.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/field_data.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/globalindexer.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/gyro_average.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/unused.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/invert_pardiv.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/openmpwrap.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/assert.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/rvec.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/interpolation.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/msg_stack.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/boundary_region.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/boutexception.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/single_index_ops.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/openmpi-riscv64/bout++/bout/snb.hxx
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-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/python3.12/site-packages/openmpi/boutconfig/__init__.py
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/openmpi/lib/cmake/bout++/bout++Targets.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/openmpi/lib/cmake/bout++/bout++Targets-relwithdebinfo.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/openmpi/lib/cmake/bout++/bout++ConfigVersion.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/openmpi/lib/cmake/bout++/BOUT++functions.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/openmpi/lib/cmake/bout++/CorrectWindowsPaths.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/openmpi/lib/cmake/bout++/FindClangFormat.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/openmpi/lib/cmake/bout++/FindFFTW.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/openmpi/lib/cmake/bout++/FindHYPRE.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/openmpi/lib/cmake/bout++/FindnetCDF.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/openmpi/lib/cmake/bout++/FindnetCDFCxx.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/openmpi/lib/cmake/bout++/FindPackageMultipass.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/openmpi/lib/cmake/bout++/FindLibuuid.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/openmpi/lib/cmake/bout++/FindPETSc.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/openmpi/lib/cmake/bout++/FindScoreP.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/openmpi/lib/cmake/bout++/FindSLEPc.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/openmpi/lib/cmake/bout++/FindSUNDIALS.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/openmpi/lib/cmake/bout++/FindSphinx.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/openmpi/lib/cmake/bout++/ResolveCompilerPaths.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/openmpi/lib/cmake/bout++/bout++Config.cmake
++ grep -E '/libbout|/libpvode|/libpvpre'
++ find /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/python3.12/site-packages/openmpi
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/openmpi/lib/libpvpre.so.1.0.0
/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/openmpi/lib/libpvpre.so.1.0.0: RUNPATH=///usr/lib64/openmpi/lib:/usr/lib64/openmpi/lib
/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/openmpi/lib/libpvpre.so.1.0.0: new RUNPATH: /usr/lib64/openmpi/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/openmpi/lib/libbout++.so.5.1.0
/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/openmpi/lib/libbout++.so.5.1.0: RUNPATH=///usr/lib64/openmpi/lib:/usr/lib64/openmpi/lib
/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/openmpi/lib/libbout++.so.5.1.0: new RUNPATH: /usr/lib64/openmpi/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/openmpi/lib/libpvode.so.1.0.0
/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/openmpi/lib/libpvode.so.1.0.0: RUNPATH=///usr/lib64/openmpi/lib:/usr/lib64/openmpi/lib
/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/openmpi/lib/libpvode.so.1.0.0: new RUNPATH: /usr/lib64/openmpi/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/openmpi/lib/libpvpre.so
/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/openmpi/lib/libpvpre.so: RUNPATH=/usr/lib64/openmpi/lib
/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/openmpi/lib/libpvpre.so: new RUNPATH: /usr/lib64/openmpi/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/openmpi/lib/libbout++.so
/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/openmpi/lib/libbout++.so: RUNPATH=/usr/lib64/openmpi/lib
/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/openmpi/lib/libbout++.so: new RUNPATH: /usr/lib64/openmpi/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/openmpi/lib/libpvode.so
/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/openmpi/lib/libpvode.so: RUNPATH=/usr/lib64/openmpi/lib
/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/openmpi/lib/libpvode.so: new RUNPATH: /usr/lib64/openmpi/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/python3.12/site-packages/openmpi/boutpp/libboutpp.cpython-312-riscv64-linux-gnu.so
/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/python3.12/site-packages/openmpi/boutpp/libboutpp.cpython-312-riscv64-linux-gnu.so: RUNPATH=///usr/lib64/openmpi/lib:/usr/lib64/openmpi/lib
/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/python3.12/site-packages/openmpi/boutpp/libboutpp.cpython-312-riscv64-linux-gnu.so: new RUNPATH: /usr/lib64/openmpi/lib
+ rm -rf /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/bout++
+ mkdir -p /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/modulefiles/bout++
+ cat
+ DESTDIR=/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64
+ /usr/bin/cmake --install build_openmpi/manual
-- Install configuration: "RelWithDebInfo"
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++/
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_apidoc
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_apidoc/boutdata.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_apidoc/zoidberg.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_apidoc/boututils.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_apidoc/boutpp.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//objects.inv
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//searchindex.js
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/output_and_post.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/boundary_options.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/running_bout.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/quickstart.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/installing.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/petsc.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/BOUT_Gradperp_op.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/gpu_support.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/parallel-transforms.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/advanced_install.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/differential_operators.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/python_boutpp.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/staggered_grids.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/input_grids.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/physics_models.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/new_in_v5.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/invertable_operator.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/python.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/laplacian.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/nonlocal.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/makefiles.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/bout_options.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/eigenvalue_solver.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/preconditioning.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/algebraic_operators.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/variable_init.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/coordinates.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/introduction.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/time_integration.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/testing.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/bout_functions_for_physics.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/5PointStencilGlobalIndices.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/poincare.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/snb-step.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/5PointStencilMeshWithStencil.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/fluid_norm_mc.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/layout1.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/petsc_interface_overview.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/layout2.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/init_balloon.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/boutmesh-comms.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/interchange_inst_test.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/topology_cross_section.svg
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/sod_result.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/grid_gen.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/quickstart_conduction_example.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/operator_stencil_uml.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/snb-sinusoidal.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/memory.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/5PointStencilMesh.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/stagLocations.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/par_laplace.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/elliptic_grid.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/diffStencils.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/5PointStencilMatrix.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/petsc_vector_set.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/topology_schematic.svg
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//py-modindex.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_static
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_static/language_data.js
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_static/pygments.css
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_static/searchtools.js
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_static/documentation_options.js
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_static/doctools.js
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_static/minus.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_static/contents.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_static/sphinx_highlight.js
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_static/plus.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_static/file.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_static/sphinxdoc.css
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_static/css
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+ '[' openmpi = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS='
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo x
+++ '[' -n x ']'
++++ eval 'echo ${LD_LIBRARY_PATH}'
+++++ echo /usr/lib64/openmpi/lib
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' '
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
_mlstatus=$?;
return $_mlstatus;
};
module() {
local _mlredir=0;
if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
_mlredir=0;
elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
_mlredir=1;
fi;
fi;
case " $@ " in
*'\'' --no-redirect '\''*) _mlredir=0 ;;
*'\'' --redirect '\''*) _mlredir=1 ;;
esac;
if [ $_mlredir -eq 0 ]; then
_module_raw "$@";
else
_module_raw "$@" 2>&1;
fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS='
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
_mlstatus=$?;
return $_mlstatus;
};
module() {
local _mlredir=0;
if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
_mlredir=0;
elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
_mlredir=1;
fi;
fi;
case " $@ " in
*'\'' --no-redirect '\''*) _mlredir=0 ;;
*'\'' --redirect '\''*) _mlredir=1 ;;
esac;
if [ $_mlredir -eq 0 ]; then
_module_raw "$@";
else
_module_raw "$@" 2>&1;
fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module unload mpi/openmpi-riscv64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw unload mpi/openmpi-riscv64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-riscv64
+ eval 'unset MPI_COMPILER;
unset LD_LIBRARY_PATH;
unset MPI_MAN;
MANPATH=/usr/share/man:; export MANPATH;
unset MPI_INCLUDE;
unset _LMFILES_;
unset LOADEDMODULES;
unset CMAKE_PREFIX_PATH;
PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
unset MPI_PYTHON3_SITEARCH;
unset MPI_HOME;
unset MPI_FORTRAN_MOD_DIR;
unset __MODULES_LMALTNAME;
unset __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH;
unset MPI_SUFFIX;
unset MPI_SYSCONFIG;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
unset MPI_LIB;
PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
unset MPI_BIN;
test 0;'
++ unset MPI_COMPILER
++ unset LD_LIBRARY_PATH
++ unset MPI_MAN
++ MANPATH=/usr/share/man:
++ export MANPATH
++ unset MPI_INCLUDE
++ unset _LMFILES_
++ unset LOADEDMODULES
++ unset CMAKE_PREFIX_PATH
++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ unset MPI_PYTHON3_SITEARCH
++ unset MPI_HOME
++ unset MPI_FORTRAN_MOD_DIR
++ unset __MODULES_LMALTNAME
++ unset __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:1
++ export __MODULES_SHARE_MANPATH
++ unset MPI_SUFFIX
++ unset MPI_SYSCONFIG
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ unset MPI_LIB
++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ unset MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ for mpi in openmpi mpich
+ '[' mpich = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS='
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
_mlstatus=$?;
return $_mlstatus;
};
module() {
local _mlredir=0;
if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
_mlredir=0;
elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
_mlredir=1;
fi;
fi;
case " $@ " in
*'\'' --no-redirect '\''*) _mlredir=0 ;;
*'\'' --redirect '\''*) _mlredir=1 ;;
esac;
if [ $_mlredir -eq 0 ]; then
_module_raw "$@";
else
_module_raw "$@" 2>&1;
fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
LOADEDMODULES=; export LOADEDMODULES;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS='
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
_mlstatus=$?;
return $_mlstatus;
};
module() {
local _mlredir=0;
if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
_mlredir=0;
elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
_mlredir=1;
fi;
fi;
case " $@ " in
*'\'' --no-redirect '\''*) _mlredir=0 ;;
*'\'' --redirect '\''*) _mlredir=1 ;;
esac;
if [ $_mlredir -eq 0 ]; then
_module_raw "$@";
else
_module_raw "$@" 2>&1;
fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
LOADEDMODULES=; export LOADEDMODULES;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ LOADEDMODULES=
++++ export LOADEDMODULES
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module load mpi/mpich-riscv64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw load mpi/mpich-riscv64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-riscv64
+ eval 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib; export LD_LIBRARY_PATH;
MPI_COMPILER=mpich-riscv64; export MPI_COMPILER;
MANPATH=/usr/share/man/mpich-riscv64:/usr/share/man:; export MANPATH;
MPI_INCLUDE=/usr/include/mpich-riscv64; export MPI_INCLUDE;
MPI_MAN=/usr/share/man/mpich-riscv64; export MPI_MAN;
MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON_SITEARCH;
_LMFILES_=/usr/share/modulefiles/mpi/mpich-riscv64; export _LMFILES_;
LOADEDMODULES=mpi/mpich-riscv64; export LOADEDMODULES;
PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
MPI_PYTHON3_SITEARCH=/usr/lib64/python3.12/site-packages/mpich; export MPI_PYTHON3_SITEARCH;
MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich; export MPI_FORTRAN_MOD_DIR;
MPI_HOME=/usr/lib64/mpich; export MPI_HOME;
__MODULES_LMCONFLICT=mpi/mpich-riscv64\&mpi; export __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH;
MPI_SYSCONFIG=/etc/mpich-riscv64; export MPI_SYSCONFIG;
MPI_SUFFIX=_mpich; export MPI_SUFFIX;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON2_SITEARCH;
MPI_LIB=/usr/lib64/mpich/lib; export MPI_LIB;
PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
MPI_BIN=/usr/lib64/mpich/bin; export MPI_BIN;
test 0;'
++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib
++ export LD_LIBRARY_PATH
++ MPI_COMPILER=mpich-riscv64
++ export MPI_COMPILER
++ MANPATH=/usr/share/man/mpich-riscv64:/usr/share/man:
++ export MANPATH
++ MPI_INCLUDE=/usr/include/mpich-riscv64
++ export MPI_INCLUDE
++ MPI_MAN=/usr/share/man/mpich-riscv64
++ export MPI_MAN
++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich'
++ export MPI_PYTHON_SITEARCH
++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-riscv64
++ export _LMFILES_
++ LOADEDMODULES=mpi/mpich-riscv64
++ export LOADEDMODULES
++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.12/site-packages/mpich
++ export MPI_PYTHON3_SITEARCH
++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich
++ export MPI_FORTRAN_MOD_DIR
++ MPI_HOME=/usr/lib64/mpich
++ export MPI_HOME
++ __MODULES_LMCONFLICT='mpi/mpich-riscv64&mpi'
++ export __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:2
++ export __MODULES_SHARE_MANPATH
++ MPI_SYSCONFIG=/etc/mpich-riscv64
++ export MPI_SYSCONFIG
++ MPI_SUFFIX=_mpich
++ export MPI_SUFFIX
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich'
++ export MPI_PYTHON2_SITEARCH
++ MPI_LIB=/usr/lib64/mpich/lib
++ export MPI_LIB
++ PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ MPI_BIN=/usr/lib64/mpich/bin
++ export MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ export 'CFLAGS=-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer'
+ CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer'
+ DESTDIR=/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64
+ /usr/bin/cmake --install build_mpich
-- Install configuration: "RelWithDebInfo"
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/python3.12/site-packages/mpich/boutpp/libboutpp.cpython-312-riscv64-linux-gnu.so
-- Set runtime path of "/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/python3.12/site-packages/mpich/boutpp/libboutpp.cpython-312-riscv64-linux-gnu.so" to "///usr/lib64/mpich/lib"
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/python3.12/site-packages/mpich/boutpp/__init__.py
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/mpich/lib/libpvode.so.1.0.0
-- Set runtime path of "/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/mpich/lib/libpvode.so.1.0.0" to "///usr/lib64/mpich/lib"
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/mpich/lib/libpvode.so
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/mpich/lib/libpvpre.so.1.0.0
-- Set runtime path of "/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/mpich/lib/libpvpre.so.1.0.0" to "///usr/lib64/mpich/lib"
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/mpich/lib/libpvpre.so
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/pvode
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/pvode/llnltyps.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/pvode/cvode.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/pvode/iterativ.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/pvode/band.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/pvode/nvector.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/pvode/cvdiag.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/pvode/cvspgmr.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/pvode/smalldense.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/pvode/vector.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/pvode/pvbbdpre.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/pvode/llnlmath.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/pvode/spgmr.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/mpich/lib/cmake/PVODE/PVODETargets.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/mpich/lib/cmake/PVODE/PVODETargets-relwithdebinfo.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/locale/es/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/locale/de/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/locale/fr/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/locale/zh_CN/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/locale/zh_TW/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/mpich/lib/libbout++.so.5.1.0
-- Set runtime path of "/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/mpich/lib/libbout++.so.5.1.0" to "///usr/lib64/mpich/lib"
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/mpich/lib/libbout++.so
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/stencils.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/invert_parderiv.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/invert_laplace.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/boutcomm.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/boundary_factory.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/options_netcdf.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/optionsreader.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/cyclic_reduction.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/difops.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/sourcex.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/field_data.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/gyro_average.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/solverfactory.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/array.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/stencils.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/invert_parderiv.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/invert_laplace.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/coordinates.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/boutcomm.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/boundary_factory.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/generic_factory.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/options_netcdf.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/hyprelib.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/optionsreader.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/mpi_wrapper.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/field_accessor.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/sundials_backports.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/output_bout_types.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/cyclic_reduction.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/invert
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/invert/laplacexy2_hypre.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/invert/laplacexz.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/invert/laplacexy2.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/invert/laplacexy.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/difops.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/sourcex.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/expr.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/field_data.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/globalindexer.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/gyro_average.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/unused.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/invert_pardiv.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/openmpwrap.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/assert.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/rvec.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/interpolation.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/msg_stack.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/boundary_region.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/boutexception.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/single_index_ops.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/snb.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/sys
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/sys/uncopyable.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/sys/variant.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/sys/generator_context.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/include/mpich-riscv64/bout++/bout/sys/type_name.hxx
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-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/mpich/lib/cmake/bout++/CorrectWindowsPaths.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/mpich/lib/cmake/bout++/FindClangFormat.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/mpich/lib/cmake/bout++/FindFFTW.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/mpich/lib/cmake/bout++/FindHYPRE.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/mpich/lib/cmake/bout++/FindnetCDF.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/mpich/lib/cmake/bout++/FindnetCDFCxx.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/mpich/lib/cmake/bout++/FindPackageMultipass.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/mpich/lib/cmake/bout++/FindLibuuid.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/mpich/lib/cmake/bout++/FindPETSc.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/mpich/lib/cmake/bout++/FindScoreP.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/mpich/lib/cmake/bout++/FindSLEPc.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/mpich/lib/cmake/bout++/FindSUNDIALS.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/mpich/lib/cmake/bout++/FindSphinx.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/mpich/lib/cmake/bout++/ResolveCompilerPaths.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/mpich/lib/cmake/bout++/bout++Config.cmake
++ find /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/python3.12/site-packages/mpich
++ grep -E '/libbout|/libpvode|/libpvpre'
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/mpich/lib/libpvpre.so.1.0.0
/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/mpich/lib/libpvpre.so.1.0.0: RUNPATH=///usr/lib64/mpich/lib:/usr/lib64/mpich/lib
/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/mpich/lib/libpvpre.so.1.0.0: new RUNPATH: /usr/lib64/mpich/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/mpich/lib/libbout++.so.5.1.0
/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/mpich/lib/libbout++.so.5.1.0: RUNPATH=///usr/lib64/mpich/lib:/usr/lib64/mpich/lib
/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/mpich/lib/libbout++.so.5.1.0: new RUNPATH: /usr/lib64/mpich/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/mpich/lib/libpvode.so.1.0.0
/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/mpich/lib/libpvode.so.1.0.0: RUNPATH=///usr/lib64/mpich/lib:/usr/lib64/mpich/lib
/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/mpich/lib/libpvode.so.1.0.0: new RUNPATH: /usr/lib64/mpich/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/mpich/lib/libpvpre.so
/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/mpich/lib/libpvpre.so: RUNPATH=/usr/lib64/mpich/lib
/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/mpich/lib/libpvpre.so: new RUNPATH: /usr/lib64/mpich/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/mpich/lib/libbout++.so
/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/mpich/lib/libbout++.so: RUNPATH=/usr/lib64/mpich/lib
/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/mpich/lib/libbout++.so: new RUNPATH: /usr/lib64/mpich/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/mpich/lib/libpvode.so
/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/mpich/lib/libpvode.so: RUNPATH=/usr/lib64/mpich/lib
/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/mpich/lib/libpvode.so: new RUNPATH: /usr/lib64/mpich/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep -E '/libbout|/libpvode|/libpvpre')
+ chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/python3.12/site-packages/mpich/boutpp/libboutpp.cpython-312-riscv64-linux-gnu.so
/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/python3.12/site-packages/mpich/boutpp/libboutpp.cpython-312-riscv64-linux-gnu.so: RUNPATH=///usr/lib64/mpich/lib:/usr/lib64/mpich/lib
/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64//usr/lib64/python3.12/site-packages/mpich/boutpp/libboutpp.cpython-312-riscv64-linux-gnu.so: new RUNPATH: /usr/lib64/mpich/lib
+ rm -rf /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/bout++
+ mkdir -p /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/modulefiles/bout++
+ cat
+ DESTDIR=/builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64
+ /usr/bin/cmake --install build_mpich/manual
-- Install configuration: "RelWithDebInfo"
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++/
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_apidoc
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_apidoc/boutdata.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_apidoc/zoidberg.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_apidoc/boututils.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_apidoc/boutpp.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//objects.inv
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//searchindex.js
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/output_and_post.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/boundary_options.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/running_bout.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/quickstart.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/installing.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/petsc.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/BOUT_Gradperp_op.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/gpu_support.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/parallel-transforms.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/advanced_install.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/differential_operators.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/python_boutpp.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/staggered_grids.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/input_grids.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/physics_models.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/new_in_v5.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/invertable_operator.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/python.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/laplacian.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/nonlocal.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/makefiles.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/bout_options.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/eigenvalue_solver.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/preconditioning.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/algebraic_operators.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/variable_init.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/coordinates.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/introduction.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/time_integration.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/testing.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//user_docs/bout_functions_for_physics.html
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/5PointStencilGlobalIndices.png
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/poincare.png
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/snb-step.png
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/5PointStencilMeshWithStencil.png
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/fluid_norm_mc.png
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/layout1.png
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/petsc_interface_overview.png
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/layout2.png
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/init_balloon.png
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/boutmesh-comms.png
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/interchange_inst_test.png
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/topology_cross_section.svg
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/sod_result.png
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/grid_gen.png
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/quickstart_conduction_example.png
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/operator_stencil_uml.png
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/snb-sinusoidal.png
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/memory.png
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/5PointStencilMesh.png
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/stagLocations.png
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/par_laplace.png
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/elliptic_grid.png
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/diffStencils.png
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/5PointStencilMatrix.png
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/petsc_vector_set.png
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_images/topology_schematic.svg
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//py-modindex.html
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_static
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_static/language_data.js
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_static/pygments.css
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_static/searchtools.js
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_static/documentation_options.js
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_static/doctools.js
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_static/minus.png
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_static/contents.png
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_static/sphinx_highlight.js
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_static/plus.png
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_static/file.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_static/sphinxdoc.css
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_static/css
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_static/css/custom.css
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_static/basic.css
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_static/navigation.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//genindex.html
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/_apidoc
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/_apidoc/boutdata.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/_apidoc/zoidberg.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/_apidoc/boututils.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/_apidoc/boutpp.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/user_docs
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/user_docs/invertable_operator.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/user_docs/makefiles.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/user_docs/installing.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/user_docs/nonlocal.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/user_docs/parallel-transforms.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/user_docs/quickstart.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/user_docs/output_and_post.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/user_docs/variable_init.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/user_docs/staggered_grids.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/user_docs/gpu_support.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/user_docs/eigenvalue_solver.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/user_docs/bout_functions_for_physics.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/user_docs/laplacian.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/user_docs/testing.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/user_docs/running_bout.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/user_docs/new_in_v5.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/user_docs/physics_models.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/user_docs/coordinates.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/user_docs/boundary_options.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/user_docs/BOUT_Gradperp_op.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/user_docs/bout_options.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/user_docs/differential_operators.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/user_docs/python_boutpp.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/user_docs/introduction.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/user_docs/algebraic_operators.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/user_docs/time_integration.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/user_docs/python.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/user_docs/input_grids.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/user_docs/advanced_install.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/user_docs/petsc.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/user_docs/preconditioning.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/index.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/developer_docs
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/developer_docs/git_basics.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/developer_docs/performance_profiling.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/developer_docs/mesh.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/developer_docs/data_types.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/developer_docs/file_io.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/developer_docs/contributing.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/developer_docs/natural_language.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/developer_docs/petsc_interface.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/developer_docs/code_layout.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//_sources/api_reference.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//developer_docs
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//developer_docs/data_types.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//developer_docs/contributing.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//developer_docs/git_basics.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//developer_docs/mesh.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//developer_docs/code_layout.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//developer_docs/performance_profiling.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//developer_docs/petsc_interface.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//developer_docs/natural_language.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//developer_docs/file_io.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//search.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//index.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/share/doc/bout++//api_reference.html
+ '[' mpich = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS='
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo x
+++ '[' -n x ']'
++++ eval 'echo ${LD_LIBRARY_PATH}'
+++++ echo /usr/lib64/mpich/lib
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' '
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/mpich/lib
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
_mlstatus=$?;
return $_mlstatus;
};
module() {
local _mlredir=0;
if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
_mlredir=0;
elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
_mlredir=1;
fi;
fi;
case " $@ " in
*'\'' --no-redirect '\''*) _mlredir=0 ;;
*'\'' --redirect '\''*) _mlredir=1 ;;
esac;
if [ $_mlredir -eq 0 ]; then
_module_raw "$@";
else
_module_raw "$@" 2>&1;
fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS='
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
_mlstatus=$?;
return $_mlstatus;
};
module() {
local _mlredir=0;
if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
_mlredir=0;
elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
_mlredir=1;
fi;
fi;
case " $@ " in
*'\'' --no-redirect '\''*) _mlredir=0 ;;
*'\'' --redirect '\''*) _mlredir=1 ;;
esac;
if [ $_mlredir -eq 0 ]; then
_module_raw "$@";
else
_module_raw "$@" 2>&1;
fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module unload mpi/mpich-riscv64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw unload mpi/mpich-riscv64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-riscv64
+ eval 'unset LD_LIBRARY_PATH;
unset MPI_COMPILER;
MANPATH=/usr/share/man:; export MANPATH;
unset MPI_INCLUDE;
unset MPI_MAN;
unset MPI_PYTHON_SITEARCH;
unset _LMFILES_;
unset LOADEDMODULES;
PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
unset MPI_PYTHON3_SITEARCH;
unset MPI_FORTRAN_MOD_DIR;
unset MPI_HOME;
unset __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH;
unset MPI_SYSCONFIG;
unset MPI_SUFFIX;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
unset MPI_PYTHON2_SITEARCH;
unset MPI_LIB;
PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
unset MPI_BIN;
test 0;'
++ unset LD_LIBRARY_PATH
++ unset MPI_COMPILER
++ MANPATH=/usr/share/man:
++ export MANPATH
++ unset MPI_INCLUDE
++ unset MPI_MAN
++ unset MPI_PYTHON_SITEARCH
++ unset _LMFILES_
++ unset LOADEDMODULES
++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ unset MPI_PYTHON3_SITEARCH
++ unset MPI_FORTRAN_MOD_DIR
++ unset MPI_HOME
++ unset __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:1
++ export __MODULES_SHARE_MANPATH
++ unset MPI_SYSCONFIG
++ unset MPI_SUFFIX
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ unset MPI_PYTHON2_SITEARCH
++ unset MPI_LIB
++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ unset MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ /usr/lib/rpm/find-lang.sh /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64 libbout
+ /usr/bin/find-debuginfo -j8 --strict-build-id -m -i --build-id-seed 5.1.0-1.fc40 --unique-debug-suffix -5.1.0-1.fc40.riscv64 --unique-debug-src-base bout++-5.1.0-1.fc40.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/BOUT++-v5.1.0
find-debuginfo: starting
Extracting debug info from 8 files
DWARF-compressing 8 files
sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/bout++-5.1.0-1.fc40.riscv64
21593 blocks
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/lib64/openmpi/bin/bout-v5-macro-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-v5-physics-model-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-add-mod-path from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-sonnet from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-v5-input-file-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-boutdata-restart-create from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-build-deps.sh from /usr/bin/env bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/openmpi/bin/bout-archive-helper.sh from /usr/bin/env bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/openmpi/bin/bout_3to4.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-changelog-generator.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-config from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/lib64/openmpi/bin/bout-v5-factory-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-log-color from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/lib64/openmpi/bin/bout_4to5 from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/openmpi/bin/bout-v5-xzinterpolation-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-v5-header-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-stop-script from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/openmpi/bin/bout-v5-format-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-v5-macro-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-v5-physics-model-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-add-mod-path from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-sonnet from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-v5-input-file-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-boutdata-restart-create from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-build-deps.sh from /usr/bin/env bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/mpich/bin/bout-archive-helper.sh from /usr/bin/env bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/mpich/bin/bout_3to4.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-changelog-generator.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-config from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/lib64/mpich/bin/bout-v5-factory-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-log-color from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/lib64/mpich/bin/bout_4to5 from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/mpich/bin/bout-v5-xzinterpolation-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-v5-header-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-stop-script from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/mpich/bin/bout-v5-format-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j8
Bytecompiling .py files below /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib64/python3.12 using python3.12
Bytecompiling .py files below /builddir/build/BUILDROOT/bout++-5.1.0-1.fc40.riscv64/usr/lib/debug/usr/lib64/python3.12 using python3.12
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.LSBa1P
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd BOUT++-v5.1.0
+ for mpi in openmpi mpich
+ fail=1
+ '[' openmpi = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS='
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
_mlstatus=$?;
return $_mlstatus;
};
module() {
local _mlredir=0;
if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
_mlredir=0;
elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
_mlredir=1;
fi;
fi;
case " $@ " in
*'\'' --no-redirect '\''*) _mlredir=0 ;;
*'\'' --redirect '\''*) _mlredir=1 ;;
esac;
if [ $_mlredir -eq 0 ]; then
_module_raw "$@";
else
_module_raw "$@" 2>&1;
fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS='
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
_mlstatus=$?;
return $_mlstatus;
};
module() {
local _mlredir=0;
if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
_mlredir=0;
elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
_mlredir=1;
fi;
fi;
case " $@ " in
*'\'' --no-redirect '\''*) _mlredir=0 ;;
*'\'' --redirect '\''*) _mlredir=1 ;;
esac;
if [ $_mlredir -eq 0 ]; then
_module_raw "$@";
else
_module_raw "$@" 2>&1;
fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module load mpi/openmpi-riscv64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw load mpi/openmpi-riscv64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-riscv64
+ eval 'MPI_COMPILER=openmpi-riscv64; export MPI_COMPILER;
LD_LIBRARY_PATH=/usr/lib64/openmpi/lib; export LD_LIBRARY_PATH;
MPI_MAN=/usr/share/man/openmpi-riscv64; export MPI_MAN;
MANPATH=/usr/share/man/openmpi-riscv64:/usr/share/man:; export MANPATH;
MPI_INCLUDE=/usr/include/openmpi-riscv64; export MPI_INCLUDE;
_LMFILES_=/usr/share/modulefiles/mpi/openmpi-riscv64; export _LMFILES_;
LOADEDMODULES=mpi/openmpi-riscv64; export LOADEDMODULES;
CMAKE_PREFIX_PATH=/usr/lib64/openmpi; export CMAKE_PREFIX_PATH;
PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
MPI_PYTHON3_SITEARCH=/usr/lib64/python3.12/site-packages/openmpi; export MPI_PYTHON3_SITEARCH;
MPI_HOME=/usr/lib64/openmpi; export MPI_HOME;
MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi; export MPI_FORTRAN_MOD_DIR;
__MODULES_LMALTNAME=mpi/openmpi-riscv64\&as\|mpi/default\&as\|mpi/latest; export __MODULES_LMALTNAME;
__MODULES_LMCONFLICT=mpi/openmpi-riscv64\&mpi; export __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH;
MPI_SUFFIX=_openmpi; export MPI_SUFFIX;
MPI_SYSCONFIG=/etc/openmpi-riscv64; export MPI_SYSCONFIG;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
MPI_LIB=/usr/lib64/openmpi/lib; export MPI_LIB;
~/build/BUILD/BOUT++-v5.1.0/build_openmpi ~/build/BUILD/BOUT++-v5.1.0
PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
MPI_BIN=/usr/lib64/openmpi/bin; export MPI_BIN;
test 0;'
++ MPI_COMPILER=openmpi-riscv64
++ export MPI_COMPILER
++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
++ export LD_LIBRARY_PATH
++ MPI_MAN=/usr/share/man/openmpi-riscv64
++ export MPI_MAN
++ MANPATH=/usr/share/man/openmpi-riscv64:/usr/share/man:
++ export MANPATH
++ MPI_INCLUDE=/usr/include/openmpi-riscv64
++ export MPI_INCLUDE
++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-riscv64
++ export _LMFILES_
++ LOADEDMODULES=mpi/openmpi-riscv64
++ export LOADEDMODULES
++ CMAKE_PREFIX_PATH=/usr/lib64/openmpi
++ export CMAKE_PREFIX_PATH
++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.12/site-packages/openmpi
++ export MPI_PYTHON3_SITEARCH
++ MPI_HOME=/usr/lib64/openmpi
++ export MPI_HOME
++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi
++ export MPI_FORTRAN_MOD_DIR
++ __MODULES_LMALTNAME='mpi/openmpi-riscv64&as|mpi/default&as|mpi/latest'
++ export __MODULES_LMALTNAME
++ __MODULES_LMCONFLICT='mpi/openmpi-riscv64&mpi'
++ export __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:2
++ export __MODULES_SHARE_MANPATH
++ MPI_SUFFIX=_openmpi
++ export MPI_SUFFIX
++ MPI_SYSCONFIG=/etc/openmpi-riscv64
++ export MPI_SYSCONFIG
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ MPI_LIB=/usr/lib64/openmpi/lib
++ export MPI_LIB
++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ MPI_BIN=/usr/lib64/openmpi/bin
++ export MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ export PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe
+ PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe
+ pushd build_openmpi
+ export OMPI_MCA_rmaps_base_oversubscribe=yes
+ OMPI_MCA_rmaps_base_oversubscribe=yes
+ export PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe
+ PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe
+ export HDF5_USE_FILE_LOCKING=FALSE
+ HDF5_USE_FILE_LOCKING=FALSE
+ sed 's/ 3s / 30s /' tests/integrated/test-coordinates-initialization/runtest
#!/bin/bash
# Cores: 3
make || exit
test -z $MPIRUN && MPIRUN='mpirun -np'
# Kill the test after 3 seconds, if it hasn't already exited
OMP_NUM_THREADS=1 $MPIRUN 3 timeout 30s ./test-coordinates-initialization
e=$?
if test $e -ne 0
then
echo "The test failed. That can be caused by a timeout."
echo "If this test is run on high load, it may fail occasionally."
echo "The load is:"
uptime
fi
exit $e
+ make -j8 build-check
/usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 build-check
make[1]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
/usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles 72
make -f CMakeFiles/Makefile2 CMakeFiles/build-check.dir/all
make[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/depend
make -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/depend
make -f tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build.make tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE/CMakeFiles/pvpre.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googletest /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE/CMakeFiles/pvode.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build.make tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make[3]: Nothing to be done for 'externalpackages/PVODE/CMakeFiles/pvpre.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make[3]: Nothing to be done for 'externalpackages/PVODE/CMakeFiles/pvode.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 0%] Building CXX object tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googletest && /usr/lib64/openmpi/bin/mpicxx -DGTEST_CREATE_SHARED_LIBRARY=1 -DGTEST_HAS_PTHREAD=0 -Dgtest_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wshadow -Werror -Wno-error=dangling-else -DGTEST_HAS_PTHREAD=0 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -MD -MT tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o -MF CMakeFiles/gtest.dir/src/gtest-all.cc.o.d -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/src/gtest-all.cc
[ 1%] Built target pvpre
[ 4%] Built target pvode
make -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles/bout++.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make[3]: Nothing to be done for 'CMakeFiles/bout++.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 43%] Built target bout++
make -f tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build.make tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/depend
make -f tests/MMS/advection/CMakeFiles/MMS-advection.dir/build.make tests/MMS/advection/CMakeFiles/MMS-advection.dir/depend
make -f tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build.make tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/depend
make -f tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build.make tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/depend
make -f tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build.make tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/depend
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make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/advection /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/advection /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/advection/CMakeFiles/MMS-advection.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d-y /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/wave-1d-y /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/DependInfo.cmake "--color="
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cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/spatial/fci /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/spatial/fci /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/DependInfo.cmake "--color="
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/diffusion /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/diffusion /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
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cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/DependInfo.cmake "--color="
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/wave-1d /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown-weights /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-yupdown-weights /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/DependInfo.cmake "--color="
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make -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-312-riscv64-linux-gnu.dir/build
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cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/advection && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/MMS/advection/CMakeFiles/MMS-advection.dir/advection.cxx.o -MF CMakeFiles/MMS-advection.dir/advection.cxx.o.d -o CMakeFiles/MMS-advection.dir/advection.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/advection/advection.cxx
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cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/diffusion && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/diffusion -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o -MF CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o.d -o CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/diffusion/diffusion.cxx
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cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/wave-1d-y && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d-y -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/wave.cxx.o -MF CMakeFiles/MMS-wave-1d-y.dir/wave.cxx.o.d -o CMakeFiles/MMS-wave-1d-y.dir/wave.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d-y/wave.cxx
[ 45%] Building CXX object tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/fci_mms.cxx.o
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cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/wave-1d && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/wave.cxx.o -MF CMakeFiles/MMS-wave-1d.dir/wave.cxx.o.d -o CMakeFiles/MMS-wave-1d.dir/wave.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d/wave.cxx
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/spatial/fci && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/spatial/fci -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/fci_mms.cxx.o -MF CMakeFiles/MMS-spatial-fci.dir/fci_mms.cxx.o.d -o CMakeFiles/MMS-spatial-fci.dir/fci_mms.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/spatial/fci/fci_mms.cxx
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cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-yupdown-weights && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown-weights -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o -MF CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o.d -o CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown-weights/test_yupdown_weights.cxx
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make -f tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build.make tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/depend
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cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-backtrace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-backtrace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/DependInfo.cmake "--color="
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cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-backtrace && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-backtrace -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/boutexcept.cxx.o -MF CMakeFiles/test-backtrace.dir/boutexcept.cxx.o.d -o CMakeFiles/test-backtrace.dir/boutexcept.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-backtrace/boutexcept.cxx
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cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-backtrace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-backtrace.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-backtrace.dir/boutexcept.cxx.o" -o boutexcept -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
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make -f tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build.make tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/depend
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cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-beuler /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-beuler /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/DependInfo.cmake "--color="
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make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 48%] Building CXX object tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/test_beuler.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-beuler && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-beuler -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/test_beuler.cxx.o -MF CMakeFiles/test_beuler.dir/test_beuler.cxx.o.d -o CMakeFiles/test_beuler.dir/test_beuler.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-beuler/test_beuler.cxx
[ 50%] Linking CXX executable test_yupdown_weights
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-yupdown-weights && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-yupdown-weights.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o" -o test_yupdown_weights -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 50%] Built target test-yupdown-weights
make -f tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build.make tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-bout-override-default-option /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-bout-override-default-option /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build.make tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 50%] Building CXX object tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-bout-override-default-option && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-bout-override-default-option -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o -MF CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o.d -o CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-bout-override-default-option/test-bout-override-default-option.cxx
[ 50%] Linking CXX executable wave
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/wave-1d-y && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-wave-1d-y.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/MMS-wave-1d-y.dir/wave.cxx.o" -o wave -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 50%] Built target MMS-wave-1d-y
make -f tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build.make tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-command-args /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-command-args /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build.make tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 51%] Building CXX object tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/command-args.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-command-args && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-command-args -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/command-args.cxx.o -MF CMakeFiles/test-command-args.dir/command-args.cxx.o.d -o CMakeFiles/test-command-args.dir/command-args.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-command-args/command-args.cxx
[ 51%] Linking CXX executable fci_mms
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/spatial/fci && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-spatial-fci.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/MMS-spatial-fci.dir/fci_mms.cxx.o" -o fci_mms -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../../lib/libpvode.so.1.0.0 ../../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
[ 51%] Linking CXX executable cyto
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/diffusion && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-diffusion.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o" -o cyto -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 51%] Built target MMS-spatial-fci
make -f tests/integrated/test-communications/CMakeFiles/test-communications.dir/build.make tests/integrated/test-communications/CMakeFiles/test-communications.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-communications /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-communications /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-communications/CMakeFiles/test-communications.dir/DependInfo.cmake "--color="
[ 51%] Linking CXX executable wave
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/wave-1d && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-wave-1d.dir/link.txt --verbose=1
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/integrated/test-communications/CMakeFiles/test-communications.dir/build.make tests/integrated/test-communications/CMakeFiles/test-communications.dir/build
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/MMS-wave-1d.dir/wave.cxx.o" -o wave -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 51%] Building CXX object tests/integrated/test-communications/CMakeFiles/test-communications.dir/test-communications.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-communications && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-communications -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-communications/CMakeFiles/test-communications.dir/test-communications.cxx.o -MF CMakeFiles/test-communications.dir/test-communications.cxx.o.d -o CMakeFiles/test-communications.dir/test-communications.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-communications/test-communications.cxx
[ 51%] Linking CXX executable advection
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/advection && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-advection.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/MMS-advection.dir/advection.cxx.o" -o advection -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 51%] Built target MMS-diffusion
make -f tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build.make tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-coordinates-initialization /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-coordinates-initialization /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build.make tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 52%] Building CXX object tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-coordinates-initialization && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-coordinates-initialization -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o -MF CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o.d -o CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-coordinates-initialization/test-coordinates-initialization.cxx
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 52%] Built target MMS-wave-1d
make -f tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build.make tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-cyclic /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-cyclic /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/DependInfo.cmake "--color="
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make -f tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build.make tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 52%] Built target MMS-advection
make -f tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build.make tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-delp2 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-delp2 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/DependInfo.cmake "--color="
[ 52%] Building CXX object tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-cyclic && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-cyclic -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o -MF CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o.d -o CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-cyclic/test_cyclic.cxx
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build.make tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 52%] Building CXX object tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/test_delp2.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-delp2 && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-delp2 -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/test_delp2.cxx.o -MF CMakeFiles/test-delp2.dir/test_delp2.cxx.o.d -o CMakeFiles/test-delp2.dir/test_delp2.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-delp2/test_delp2.cxx
[ 52%] Linking CXX executable test_beuler
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-beuler && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_beuler.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/test_beuler.dir/test_beuler.cxx.o -o test_beuler -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 52%] Built target test_beuler
make -f tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build.make tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-datafilefacade /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-datafilefacade /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build.make tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 54%] Building CXX object tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-datafilefacade && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-datafilefacade -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o -MF CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o.d -o CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-datafilefacade/test-datafile-facade.cxx
[ 54%] Linking CXX executable command-args
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-command-args && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-command-args.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-command-args.dir/command-args.cxx.o" -o command-args -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 54%] Built target test-command-args
make -f tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build.make tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-drift-instability /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build.make tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 54%] Building CXX object tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/2fluid.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-drift-instability && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/2fluid.cxx.o -MF CMakeFiles/test-drift-instability.dir/2fluid.cxx.o.d -o CMakeFiles/test-drift-instability.dir/2fluid.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability/2fluid.cxx
[ 54%] Linking CXX executable test-coordinates-initialization
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-coordinates-initialization && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-coordinates-initialization.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o" -o test-coordinates-initialization -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
[ 54%] Linking CXX executable test-bout-override-default-option
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-bout-override-default-option && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-bout-override-default-option.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o" -o test-bout-override-default-option -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 54%] Built target test-coordinates-initialization
make -f tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build.make tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability-staggered /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-drift-instability-staggered /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build.make tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 55%] Building CXX object tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-drift-instability-staggered && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability-staggered -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o -MF CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o.d -o CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-drift-instability-staggered/2fluid.cxx
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 55%] Built target test-bout-override-default-option
make -f tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build.make tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-fieldgroupComm /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-fieldgroupComm /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build.make tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 55%] Building CXX object tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-fieldgroupComm && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-fieldgroupComm -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o -MF CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o.d -o CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-fieldgroupComm/test_fieldgroupcomm.cxx
[ 55%] Linking CXX executable test-communications
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-communications && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-communications.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-communications.dir/test-communications.cxx.o" -o test-communications -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 55%] Built target test-communications
make -f tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build.make tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-griddata /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build.make tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 56%] Building CXX object tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/test_griddata.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-griddata && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/test_griddata.cxx.o -MF CMakeFiles/test-griddata.dir/test_griddata.cxx.o.d -o CMakeFiles/test-griddata.dir/test_griddata.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata/test_griddata.cxx
[ 56%] Linking CXX executable test_delp2
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-delp2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-delp2.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-delp2.dir/test_delp2.cxx.o" -o test_delp2 -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 56%] Built target test-delp2
make -f tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build.make tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata-yboundary-guards /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-griddata-yboundary-guards /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build.make tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 56%] Building CXX object tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-griddata-yboundary-guards && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata-yboundary-guards -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o -MF CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o.d -o CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-griddata-yboundary-guards/test_griddata.cxx
[ 56%] Linking CXX executable test_cyclic
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-cyclic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-cyclic.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o" -o test_cyclic -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
[ 56%] Linking CXX executable test-datafile-facade
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-datafilefacade && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-datafile-facade.dir/link.txt --verbose=1
[ 58%] Linking CXX shared library ../../../../../lib/libgtest.so
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googletest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtest.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o" -o test-datafile-facade -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
/usr/lib64/openmpi/bin/mpicxx -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libgtest.so.1.10.0 -o ../../../../../lib/libgtest.so.1.10.0 "CMakeFiles/gtest.dir/src/gtest-all.cc.o"
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 58%] Built target test-cyclic
make -f tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build.make tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-gyro /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-gyro /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build.make tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 58%] Building CXX object tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/test_gyro.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-gyro && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-gyro -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/test_gyro.cxx.o -MF CMakeFiles/test-gyro.dir/test_gyro.cxx.o.d -o CMakeFiles/test-gyro.dir/test_gyro.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-gyro/test_gyro.cxx
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 58%] Built target test-datafile-facade
make -f tests/integrated/test-initial/CMakeFiles/test-initial.dir/build.make tests/integrated/test-initial/CMakeFiles/test-initial.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-initial /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-initial /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-initial/CMakeFiles/test-initial.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/integrated/test-initial/CMakeFiles/test-initial.dir/build.make tests/integrated/test-initial/CMakeFiles/test-initial.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 58%] Building CXX object tests/integrated/test-initial/CMakeFiles/test-initial.dir/test_initial.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-initial && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-initial -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-initial/CMakeFiles/test-initial.dir/test_initial.cxx.o -MF CMakeFiles/test-initial.dir/test_initial.cxx.o.d -o CMakeFiles/test-initial.dir/test_initial.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-initial/test_initial.cxx
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googletest && /usr/bin/cmake -E cmake_symlink_library ../../../../../lib/libgtest.so.1.10.0 ../../../../../lib/libgtest.so.1.10.0 ../../../../../lib/libgtest.so
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 58%] Built target gtest
make -f tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build.make tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interchange-instability /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interchange-instability /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build.make tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 58%] Building CXX object tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interchange-instability && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interchange-instability -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o -MF CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o.d -o CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interchange-instability/2fluid.cxx
[ 58%] Linking CXX executable test_fieldgroupcomm
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-fieldgroupComm && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-fieldgroupComm.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o" -o test_fieldgroupcomm -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
[ 58%] Linking CXX executable test_griddata
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-griddata && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-griddata.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-griddata.dir/test_griddata.cxx.o" -o test_griddata -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 58%] Built target test-fieldgroupComm
make -f tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build.make tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interpolate /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build.make tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 58%] Building CXX object tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interpolate && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o -MF CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o.d -o CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate/test_interpolate.cxx
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 58%] Built target test-griddata
make -f tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build.make tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate-z /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interpolate-z /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build.make tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 58%] Building CXX object tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interpolate-z && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate-z -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o -MF CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o.d -o CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-interpolate-z/test_interpolate.cxx
[ 58%] Linking CXX executable test_griddata
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-griddata-yboundary-guards && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-griddata-yboundary-guards.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o" -o test_griddata -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 58%] Built target test-griddata-yboundary-guards
make -f tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build.make tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invertable-operator /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-invertable-operator /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build.make tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 58%] Building CXX object tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-invertable-operator && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invertable-operator -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o -MF CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o.d -o CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invertable-operator/invertable_operator.cxx
[ 58%] Linking CXX executable test_initial
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-initial && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-initial.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-initial.dir/test_initial.cxx.o" -o test_initial -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
[ 58%] Linking CXX executable 2fluid
[ 59%] Linking CXX executable test_gyro
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-drift-instability && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-drift-instability.dir/link.txt --verbose=1
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-gyro && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-gyro.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-drift-instability.dir/2fluid.cxx.o" -o 2fluid -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-gyro.dir/test_gyro.cxx.o" -o test_gyro -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
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make -f tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build.make tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invpar /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-invpar /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build.make tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 59%] Building CXX object tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/test_invpar.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-invpar && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invpar -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/test_invpar.cxx.o -MF CMakeFiles/test-invpar.dir/test_invpar.cxx.o.d -o CMakeFiles/test-invpar.dir/test_invpar.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invpar/test_invpar.cxx
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
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make -f tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build.make tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/DependInfo.cmake "--color="
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make -f tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build.make tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build
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make -f tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build.make tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace-petsc3d /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplace-petsc3d /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/DependInfo.cmake "--color="
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cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplace && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/test_laplace.cxx.o -MF CMakeFiles/test-laplace.dir/test_laplace.cxx.o.d -o CMakeFiles/test-laplace.dir/test_laplace.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace/test_laplace.cxx
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cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplace-petsc3d && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace-petsc3d -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o -MF CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o.d -o CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplace-petsc3d/test-laplace3d.cxx
[ 59%] Linking CXX executable 2fluid
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-drift-instability-staggered && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-drift-instability-staggered.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o" -o 2fluid -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
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make -f tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build.make tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/depend
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cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-fv /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexy-fv /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/DependInfo.cmake "--color="
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[ 59%] Building CXX object tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexy-fv && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-fv -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o -MF CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o.d -o CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-fv/test-laplacexy.cxx
In file included from /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invertable-operator/invertable_operator.cxx:4:
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx: In instantiation of ‘PetscErrorCode bout::inversion::InvertableOperator<T>::setup() [with T = Field3D; PetscErrorCode = int]’:
/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-invertable-operator/invertable_operator.cxx:51:19: required from here
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:222:30: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
222 | if (localmesh->firstY() or localmesh->lastY()) {
| ~~~~~~~~~~~~~~~~~^~
In file included from /builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:44:
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here
441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
| ^~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:222:30: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
222 | if (localmesh->firstY() or localmesh->lastY()) {
| ~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here
441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
| ^~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:222:52: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
222 | if (localmesh->firstY() or localmesh->lastY()) {
| ~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here
445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
| ^~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:222:52: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
222 | if (localmesh->firstY() or localmesh->lastY()) {
| ~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here
445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
| ^~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:225:36: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
225 | if (localmesh->firstY()) {
| ~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here
441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
| ^~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:225:36: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
225 | if (localmesh->firstY()) {
| ~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here
441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
| ^~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:231:35: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
231 | if (localmesh->lastY()) {
| ~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here
445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
| ^~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:231:35: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
231 | if (localmesh->lastY()) {
| ~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here
445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
| ^~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:262:30: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
262 | if (localmesh->firstY() or localmesh->lastY()) {
| ~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here
441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
| ^~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:262:30: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
262 | if (localmesh->firstY() or localmesh->lastY()) {
| ~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here
441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
| ^~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:262:52: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
262 | if (localmesh->firstY() or localmesh->lastY()) {
| ~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here
445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
| ^~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:262:52: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
262 | if (localmesh->firstY() or localmesh->lastY()) {
| ~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here
445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
| ^~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:265:36: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
265 | if (localmesh->firstY()) {
| ~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here
441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
| ^~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:265:36: warning: ‘virtual bool Mesh::firstY() const’ is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
265 | if (localmesh->firstY()) {
| ~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:441:66: note: declared here
441 | [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
| ^~~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:270:35: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
270 | if (localmesh->lastY()) {
| ~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here
445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
| ^~~~~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/invertable_operator.hxx:270:35: warning: ‘virtual bool Mesh::lastY() const’ is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
270 | if (localmesh->lastY()) {
| ~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.1.0/include/bout/mesh.hxx:445:65: note: declared here
445 | [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
| ^~~~~
[ 61%] Linking CXX executable 2fluid
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interchange-instability && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-interchange-instability.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o" -o 2fluid -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 61%] Built target test-interchange-instability
make -f tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build.make tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-short /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexy-short /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build.make tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 61%] Building CXX object tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexy-short && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-short -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o -MF CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o.d -o CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexy-short/test-laplacexy.cxx
[ 62%] Linking CXX executable test_interpolate
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interpolate-z && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-interpolate-z.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o" -o test_interpolate -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
[ 62%] Linking CXX executable test_interpolate
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-interpolate && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-interpolate.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o" -o test_interpolate -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 62%] Built target test-interpolate-z
make -f tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build.make tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexz /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexz /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build.make tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build
[ 62%] Built target test-interpolate
make -f tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build.make tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-multigrid_laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-multigrid_laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/DependInfo.cmake "--color="
[ 63%] Building CXX object tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexz && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexz -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o -MF CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o.d -o CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-laplacexz/test-laplacexz.cxx
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build.make tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 63%] Building CXX object tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-multigrid_laplace && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-multigrid_laplace -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o -MF CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o.d -o CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-multigrid_laplace/test_multigrid_laplace.cxx
[ 63%] Linking CXX executable test_laplace
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplace.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-laplace.dir/test_laplace.cxx.o" -o test_laplace -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
[ 65%] Linking CXX executable test-laplace3d
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplace-petsc3d && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplace-petsc3d.dir/link.txt --verbose=1
[ 66%] Linking CXX executable test_invpar
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-invpar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-invpar.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o" -o test-laplace3d -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-invpar.dir/test_invpar.cxx.o" -o test_invpar -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
[ 66%] Linking CXX executable test-laplacexy
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexy-fv && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplacexy-fv.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o" -o test-laplacexy -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 66%] Built target test-laplace
make -f tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build.make tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-naulin-laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-naulin-laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build.make tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 68%] Building CXX object tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-naulin-laplace && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-naulin-laplace -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o -MF CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o.d -o CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-naulin-laplace/test_naulin_laplace.cxx
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 68%] Built target test-laplace-petsc3d
make -f tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build.make tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/depend
[ 68%] Built target test-invpar
make -f tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build.make tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-options-netcdf /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-options-netcdf /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-petsc_laplace /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build.make tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build.make tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 68%] Building CXX object tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-options-netcdf && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-options-netcdf -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o -MF CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o.d -o CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-options-netcdf/test-options-netcdf.cxx
[ 69%] Building CXX object tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-petsc_laplace && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o -MF CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o.d -o CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace/test_petsc_laplace.cxx
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 69%] Built target test-laplacexy-fv
make -f tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build.make tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace_MAST-grid /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-petsc_laplace_MAST-grid /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build.make tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 69%] Building CXX object tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-petsc_laplace_MAST-grid && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace_MAST-grid -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o -MF CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o.d -o CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-petsc_laplace_MAST-grid/test_petsc_laplace_MAST_grid.cxx
[ 69%] Linking CXX executable invertable_operator
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-invertable-operator && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-invertable-operator.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o" -o invertable_operator -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 69%] Built target test-invertable-operator
make -f tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build.make tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restart-io /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-restart-io /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build.make tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 70%] Building CXX object tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-restart-io && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restart-io -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o -MF CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o.d -o CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restart-io/test-restart-io.cxx
[ 70%] Linking CXX executable test-laplacexy
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexy-short && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplacexy-short.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o" -o test-laplacexy -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 70%] Built target test-laplacexy-short
make -f tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build.make tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restarting /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-restarting /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build.make tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 70%] Building CXX object tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/test_restarting.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-restarting && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restarting -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/test_restarting.cxx.o -MF CMakeFiles/test-restarting.dir/test_restarting.cxx.o.d -o CMakeFiles/test-restarting.dir/test_restarting.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-restarting/test_restarting.cxx
[ 70%] Linking CXX executable test-laplacexz
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-laplacexz && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplacexz.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o" -o test-laplacexz -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 70%] Built target test-laplacexz
make -f tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build.make tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-smooth /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-smooth /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build.make tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 72%] Building CXX object tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/test_smooth.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-smooth && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-smooth -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/test_smooth.cxx.o -MF CMakeFiles/test-smooth.dir/test_smooth.cxx.o.d -o CMakeFiles/test-smooth.dir/test_smooth.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-smooth/test_smooth.cxx
[ 72%] Linking CXX executable test-options-netcdf
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-options-netcdf && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-options-netcdf.dir/link.txt --verbose=1
[ 72%] Linking CXX executable test_multigrid_laplace
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-multigrid_laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-multigrid-laplace.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o" -o test-options-netcdf -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o" -o test_multigrid_laplace -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 72%] Built target test-options-netcdf
make -f tests/integrated/test-snb/CMakeFiles/test-snb.dir/build.make tests/integrated/test-snb/CMakeFiles/test-snb.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-snb /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-snb /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-snb/CMakeFiles/test-snb.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/integrated/test-snb/CMakeFiles/test-snb.dir/build.make tests/integrated/test-snb/CMakeFiles/test-snb.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 72%] Built target test-multigrid-laplace
make -f tests/integrated/test-solver/CMakeFiles/test-solver.dir/build.make tests/integrated/test-solver/CMakeFiles/test-solver.dir/depend
[ 72%] Building CXX object tests/integrated/test-snb/CMakeFiles/test-snb.dir/test_snb.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-snb && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-snb -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-snb/CMakeFiles/test-snb.dir/test_snb.cxx.o -MF CMakeFiles/test-snb.dir/test_snb.cxx.o.d -o CMakeFiles/test-snb.dir/test_snb.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-snb/test_snb.cxx
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-solver /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-solver /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-solver/CMakeFiles/test-solver.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/integrated/test-solver/CMakeFiles/test-solver.dir/build.make tests/integrated/test-solver/CMakeFiles/test-solver.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 73%] Building CXX object tests/integrated/test-solver/CMakeFiles/test-solver.dir/test_solver.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-solver && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-solver -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-solver/CMakeFiles/test-solver.dir/test_solver.cxx.o -MF CMakeFiles/test-solver.dir/test_solver.cxx.o.d -o CMakeFiles/test-solver.dir/test_solver.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-solver/test_solver.cxx
[ 73%] Linking CXX executable test-restart-io
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-restart-io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-restart-io.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o" -o test-restart-io -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 73%] Built target test-restart-io
make -f tests/integrated/test-squash/CMakeFiles/test-squash.dir/build.make tests/integrated/test-squash/CMakeFiles/test-squash.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-squash /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-squash /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-squash/CMakeFiles/test-squash.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/integrated/test-squash/CMakeFiles/test-squash.dir/build.make tests/integrated/test-squash/CMakeFiles/test-squash.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 73%] Building CXX object tests/integrated/test-squash/CMakeFiles/test-squash.dir/squash.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-squash && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-squash -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-squash/CMakeFiles/test-squash.dir/squash.cxx.o -MF CMakeFiles/test-squash.dir/squash.cxx.o.d -o CMakeFiles/test-squash.dir/squash.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-squash/squash.cxx
[ 73%] Linking CXX executable test_naulin_laplace
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-naulin-laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-naulin-laplace.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o" -o test_naulin_laplace -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 73%] Built target test-naulin-laplace
make -f tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build.make tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-stopCheck /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build.make tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 73%] Building CXX object tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-stopCheck && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o -MF CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o.d -o CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck/test_stopCheck.cxx
[ 73%] Linking CXX executable test_restarting
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-restarting && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-restarting.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-restarting.dir/test_restarting.cxx.o" -o test_restarting -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
[ 73%] Linking CXX executable test_petsc_laplace_MAST_grid
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-petsc_laplace_MAST-grid && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-petsc-laplace-MAST-grid.dir/link.txt --verbose=1
[ 73%] Linking CXX executable test_petsc_laplace
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-petsc_laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-petsc-laplace.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o" -o test_petsc_laplace_MAST_grid -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o" -o test_petsc_laplace -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 73%] Built target test-restarting
make -f tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build.make tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck-file /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-stopCheck-file /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build.make tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 73%] Building CXX object tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-stopCheck-file && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck-file -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o -MF CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o.d -o CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-stopCheck-file/test_stopCheck.cxx
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 73%] Built target test-petsc-laplace-MAST-grid
make -f tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build.make tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-twistshift /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/DependInfo.cmake "--color="
[ 73%] Linking CXX executable test_smooth
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-smooth && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-smooth.dir/link.txt --verbose=1
[ 73%] Built target test-petsc-laplace
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build.make tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/depend
make -f tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build.make tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift-staggered /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-twistshift-staggered /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-smooth.dir/test_smooth.cxx.o" -o test_smooth -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
[ 73%] Building CXX object tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-twistshift && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o -MF CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o.d -o CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift/test-twistshift.cxx
make -f tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build.make tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 73%] Building CXX object tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-twistshift-staggered && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift-staggered -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o -MF CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o.d -o CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-twistshift-staggered/test-twistshift.cxx
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 73%] Built target test-smooth
make -f tests/integrated/test-vec/CMakeFiles/test-vec.dir/build.make tests/integrated/test-vec/CMakeFiles/test-vec.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-vec /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-vec /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-vec/CMakeFiles/test-vec.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/integrated/test-vec/CMakeFiles/test-vec.dir/build.make tests/integrated/test-vec/CMakeFiles/test-vec.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 73%] Building CXX object tests/integrated/test-vec/CMakeFiles/test-vec.dir/testVec.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-vec && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-vec -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-vec/CMakeFiles/test-vec.dir/testVec.cxx.o -MF CMakeFiles/test-vec.dir/testVec.cxx.o.d -o CMakeFiles/test-vec.dir/testVec.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-vec/testVec.cxx
[ 73%] Linking CXX executable squash
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-squash && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-squash.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-squash.dir/squash.cxx.o" -o squash -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 73%] Built target test-squash
make -f tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build.make tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-yupdown /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build.make tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 73%] Building CXX object tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-yupdown && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o -MF CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o.d -o CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/integrated/test-yupdown/test_yupdown.cxx
[ 75%] Linking CXX executable test_stopCheck
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-stopCheck && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-stopCheck.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o" -o test_stopCheck -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 75%] Built target test-stopCheck
make -f CMakeFiles/build-check-mms-tests.dir/build.make CMakeFiles/build-check-mms-tests.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles/build-check-mms-tests.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f CMakeFiles/build-check-mms-tests.dir/build.make CMakeFiles/build-check-mms-tests.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make[3]: Nothing to be done for 'CMakeFiles/build-check-mms-tests.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 75%] Built target build-check-mms-tests
make -f tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build.make tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googlemock /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build.make tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 75%] Building CXX object tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/src/gmock-all.cc.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googlemock && /usr/lib64/openmpi/bin/mpicxx -DGTEST_CREATE_SHARED_LIBRARY=1 -DGTEST_HAS_PTHREAD=0 -Dgmock_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wshadow -Werror -Wno-error=dangling-else -DGTEST_HAS_PTHREAD=0 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -MD -MT tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/src/gmock-all.cc.o -MF CMakeFiles/gmock.dir/src/gmock-all.cc.o.d -o CMakeFiles/gmock.dir/src/gmock-all.cc.o -c /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/src/gmock-all.cc
[ 75%] Linking CXX executable test-twistshift
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-twistshift-staggered && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-twistshift-staggered.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o" -o test-twistshift -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
[ 76%] Linking CXX executable test-twistshift
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-twistshift && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-twistshift.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o" -o test-twistshift -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 76%] Built target test-twistshift-staggered
make -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 76%] Built target test-twistshift
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 77%] Building python interface
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpython-312-riscv64-linux-gnu.so /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/../boutpp/libboutpp.cpython-312-riscv64-linux-gnu.so
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.1.0/tools/pylib/_boutpp_build/boutpp.py /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tools/pylib/_boutpp_build/../boutpp/__init__.py
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 77%] Built target boutpp
[ 77%] Linking CXX executable test_solver
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-solver && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-solver.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-solver.dir/test_solver.cxx.o" -o test_solver -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
[ 77%] Linking CXX executable test_snb
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-snb && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-snb.dir/link.txt --verbose=1
[ 77%] Linking CXX executable test_stopCheck
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-stopCheck-file && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-stopCheck-file.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-snb.dir/test_snb.cxx.o" -o test_snb -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o" -o test_stopCheck -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 77%] Built target test-solver
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 77%] Built target test-stopCheck-file
[ 77%] Built target test-snb
[ 79%] Linking CXX executable testVec
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-vec && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-vec.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-vec.dir/testVec.cxx.o" -o testVec -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 79%] Built target test-vec
[ 79%] Linking CXX executable test_yupdown
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/integrated/test-yupdown && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-yupdown.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o" -o test_yupdown -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../lib/libbout++.so.5.1.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
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make -f CMakeFiles/build-check-integrated-tests.dir/build.make CMakeFiles/build-check-integrated-tests.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles/build-check-integrated-tests.dir/DependInfo.cmake "--color="
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cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googlemock && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libgmock.so.1.10.0 -o ../../../../../lib/libgmock.so.1.10.0 "CMakeFiles/gmock.dir/src/gmock-all.cc.o" -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../../../../lib/libgtest.so.1.10.0
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/externalpackages/googletest/googlemock && /usr/bin/cmake -E cmake_symlink_library ../../../../../lib/libgmock.so.1.10.0 ../../../../../lib/libgmock.so.1.10.0 ../../../../../lib/libgmock.so
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
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cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/CMakeFiles/serial_tests.dir/DependInfo.cmake "--color="
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[ 80%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/bout_test_main.cxx.o
[ 80%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_field.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_field.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_field.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_field.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/field/test_field.cxx
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/bout_test_main.cxx.o -MF CMakeFiles/serial_tests.dir/bout_test_main.cxx.o.d -o CMakeFiles/serial_tests.dir/bout_test_main.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout_test_main.cxx
[ 80%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o
[ 80%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_field2d.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_field2d.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_field2d.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_field2d.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/field/test_field2d.cxx
[ 80%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_fieldgroup.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/field/test_field3d.cxx
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_fieldgroup.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_fieldgroup.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_fieldgroup.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/field/test_fieldgroup.cxx
[ 80%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_initialprofiles.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_initialprofiles.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_initialprofiles.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_initialprofiles.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/field/test_initialprofiles.cxx
[ 80%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_fieldperp.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_fieldperp.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_fieldperp.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_fieldperp.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/field/test_fieldperp.cxx
[ 81%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_field_factory.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_field_factory.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_field_factory.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_field_factory.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/field/test_field_factory.cxx
/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout_test_main.cxx: In function ‘int main(int, char**)’:
/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout_test_main.cxx:29:18: warning: unused variable ‘hyprelib’ [-Wunused-variable]
29 | bout::HypreLib hyprelib{};
| ^~~~~~~~
[ 81%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_vector2d.cxx.o
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cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/invert/laplace/test_laplace_cyclic.cxx.o -MF CMakeFiles/serial_tests.dir/invert/laplace/test_laplace_cyclic.cxx.o.d -o CMakeFiles/serial_tests.dir/invert/laplace/test_laplace_cyclic.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/invert/laplace/test_laplace_cyclic.cxx
[ 90%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/mesh/data/test_gridfromoptions.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/mesh/data/test_gridfromoptions.cxx.o -MF CMakeFiles/serial_tests.dir/mesh/data/test_gridfromoptions.cxx.o.d -o CMakeFiles/serial_tests.dir/mesh/data/test_gridfromoptions.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/mesh/data/test_gridfromoptions.cxx
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cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/mesh/parallel/test_shiftedmetric.cxx.o -MF CMakeFiles/serial_tests.dir/mesh/parallel/test_shiftedmetric.cxx.o.d -o CMakeFiles/serial_tests.dir/mesh/parallel/test_shiftedmetric.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/mesh/parallel/test_shiftedmetric.cxx
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cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/mesh/test_boundary_factory.cxx.o -MF CMakeFiles/serial_tests.dir/mesh/test_boundary_factory.cxx.o.d -o CMakeFiles/serial_tests.dir/mesh/test_boundary_factory.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/mesh/test_boundary_factory.cxx
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cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/mesh/test_coordinates_accessor.cxx.o -MF CMakeFiles/serial_tests.dir/mesh/test_coordinates_accessor.cxx.o.d -o CMakeFiles/serial_tests.dir/mesh/test_coordinates_accessor.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/mesh/test_coordinates_accessor.cxx
[ 93%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/mesh/test_interpolation.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/mesh/test_interpolation.cxx.o -MF CMakeFiles/serial_tests.dir/mesh/test_interpolation.cxx.o.d -o CMakeFiles/serial_tests.dir/mesh/test_interpolation.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/mesh/test_interpolation.cxx
[ 93%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/mesh/test_mesh.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/mesh/test_mesh.cxx.o -MF CMakeFiles/serial_tests.dir/mesh/test_mesh.cxx.o.d -o CMakeFiles/serial_tests.dir/mesh/test_mesh.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/mesh/test_mesh.cxx
[ 93%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/mesh/test_paralleltransform.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/mesh/test_paralleltransform.cxx.o -MF CMakeFiles/serial_tests.dir/mesh/test_paralleltransform.cxx.o.d -o CMakeFiles/serial_tests.dir/mesh/test_paralleltransform.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/mesh/test_paralleltransform.cxx
[ 94%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/solver/test_fakesolver.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/solver/test_fakesolver.cxx.o -MF CMakeFiles/serial_tests.dir/solver/test_fakesolver.cxx.o.d -o CMakeFiles/serial_tests.dir/solver/test_fakesolver.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/solver/test_fakesolver.cxx
[ 94%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/solver/test_solver.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/solver/test_solver.cxx.o -MF CMakeFiles/serial_tests.dir/solver/test_solver.cxx.o.d -o CMakeFiles/serial_tests.dir/solver/test_solver.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/solver/test_solver.cxx
[ 94%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/solver/test_solverfactory.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/solver/test_solverfactory.cxx.o -MF CMakeFiles/serial_tests.dir/solver/test_solverfactory.cxx.o.d -o CMakeFiles/serial_tests.dir/solver/test_solverfactory.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/solver/test_solverfactory.cxx
[ 94%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/sys/test_boutexception.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/sys/test_boutexception.cxx.o -MF CMakeFiles/serial_tests.dir/sys/test_boutexception.cxx.o.d -o CMakeFiles/serial_tests.dir/sys/test_boutexception.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/sys/test_boutexception.cxx
[ 95%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/sys/test_expressionparser.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/sys/test_expressionparser.cxx.o -MF CMakeFiles/serial_tests.dir/sys/test_expressionparser.cxx.o.d -o CMakeFiles/serial_tests.dir/sys/test_expressionparser.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/sys/test_expressionparser.cxx
[ 95%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/sys/test_msg_stack.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/sys/test_msg_stack.cxx.o -MF CMakeFiles/serial_tests.dir/sys/test_msg_stack.cxx.o.d -o CMakeFiles/serial_tests.dir/sys/test_msg_stack.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/sys/test_msg_stack.cxx
[ 95%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/sys/test_options.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/sys/test_options.cxx.o -MF CMakeFiles/serial_tests.dir/sys/test_options.cxx.o.d -o CMakeFiles/serial_tests.dir/sys/test_options.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/sys/test_options.cxx
[ 95%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/sys/test_options_fields.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/sys/test_options_fields.cxx.o -MF CMakeFiles/serial_tests.dir/sys/test_options_fields.cxx.o.d -o CMakeFiles/serial_tests.dir/sys/test_options_fields.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/sys/test_options_fields.cxx
[ 97%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/sys/test_options_netcdf.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/sys/test_options_netcdf.cxx.o -MF CMakeFiles/serial_tests.dir/sys/test_options_netcdf.cxx.o.d -o CMakeFiles/serial_tests.dir/sys/test_options_netcdf.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/sys/test_options_netcdf.cxx
[ 97%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/sys/test_optionsreader.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/sys/test_optionsreader.cxx.o -MF CMakeFiles/serial_tests.dir/sys/test_optionsreader.cxx.o.d -o CMakeFiles/serial_tests.dir/sys/test_optionsreader.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/sys/test_optionsreader.cxx
[ 97%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/sys/test_output.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/sys/test_output.cxx.o -MF CMakeFiles/serial_tests.dir/sys/test_output.cxx.o.d -o CMakeFiles/serial_tests.dir/sys/test_output.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/sys/test_output.cxx
[ 97%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/sys/test_range.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/sys/test_range.cxx.o -MF CMakeFiles/serial_tests.dir/sys/test_range.cxx.o.d -o CMakeFiles/serial_tests.dir/sys/test_range.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/sys/test_range.cxx
[ 97%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/sys/test_timer.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/sys/test_timer.cxx.o -MF CMakeFiles/serial_tests.dir/sys/test_timer.cxx.o.d -o CMakeFiles/serial_tests.dir/sys/test_timer.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/sys/test_timer.cxx
[ 98%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/sys/test_type_name.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/sys/test_type_name.cxx.o -MF CMakeFiles/serial_tests.dir/sys/test_type_name.cxx.o.d -o CMakeFiles/serial_tests.dir/sys/test_type_name.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/sys/test_type_name.cxx
[ 98%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/sys/test_utils.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/sys/test_utils.cxx.o -MF CMakeFiles/serial_tests.dir/sys/test_utils.cxx.o.d -o CMakeFiles/serial_tests.dir/sys/test_utils.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/sys/test_utils.cxx
[ 98%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/sys/test_variant.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/sys/test_variant.cxx.o -MF CMakeFiles/serial_tests.dir/sys/test_variant.cxx.o.d -o CMakeFiles/serial_tests.dir/sys/test_variant.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/sys/test_variant.cxx
[ 98%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/sys/test_raja.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/sys/test_raja.cxx.o -MF CMakeFiles/serial_tests.dir/sys/test_raja.cxx.o.d -o CMakeFiles/serial_tests.dir/sys/test_raja.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/sys/test_raja.cxx
/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/sys/test_raja.cxx:96:7: warning: multi-line comment [-Wcomment]
96 | #if 0 // disable temporarily until reconcile iteration space for parallel_forall under \
| ^
[100%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/test_extras.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/test_extras.cxx.o -MF CMakeFiles/serial_tests.dir/test_extras.cxx.o.d -o CMakeFiles/serial_tests.dir/test_extras.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/test_extras.cxx
[100%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/src/test_bout++.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.1.0/tests/unit -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.1.0/include -I/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-riscv64/petsc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/src/test_bout++.cxx.o -MF CMakeFiles/serial_tests.dir/src/test_bout++.cxx.o.d -o CMakeFiles/serial_tests.dir/src/test_bout++.cxx.o -c /builddir/build/BUILD/BOUT++-v5.1.0/tests/unit/src/test_bout++.cxx
[100%] Linking CXX executable serial_tests
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/unit && /usr/bin/cmake -E cmake_link_script CMakeFiles/serial_tests.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/serial_tests.dir/bout_test_main.cxx.o CMakeFiles/serial_tests.dir/field/test_field.cxx.o CMakeFiles/serial_tests.dir/field/test_field2d.cxx.o CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o CMakeFiles/serial_tests.dir/field/test_field_factory.cxx.o CMakeFiles/serial_tests.dir/field/test_fieldgroup.cxx.o CMakeFiles/serial_tests.dir/field/test_fieldperp.cxx.o CMakeFiles/serial_tests.dir/field/test_initialprofiles.cxx.o CMakeFiles/serial_tests.dir/field/test_vector2d.cxx.o CMakeFiles/serial_tests.dir/field/test_vector3d.cxx.o CMakeFiles/serial_tests.dir/field/test_where.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_array.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_assert.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_bout_enum_class.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_deriv_store.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_generic_factory.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_macro_for_each.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_monitor.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_petsc_indexer.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_petsc_matrix.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_petsc_setters.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_petsc_vector.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_region.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_single_index_ops.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_stencil.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_template_combinations.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_traits.cxx.o CMakeFiles/serial_tests.dir/include/test_cyclic_reduction.cxx.o CMakeFiles/serial_tests.dir/include/test_derivs.cxx.o CMakeFiles/serial_tests.dir/include/test_mask.cxx.o CMakeFiles/serial_tests.dir/invert/test_fft.cxx.o CMakeFiles/serial_tests.dir/invert/laplace/test_laplace_petsc3damg.cxx.o CMakeFiles/serial_tests.dir/invert/laplace/test_laplace_cyclic.cxx.o CMakeFiles/serial_tests.dir/mesh/data/test_gridfromoptions.cxx.o CMakeFiles/serial_tests.dir/mesh/parallel/test_shiftedmetric.cxx.o CMakeFiles/serial_tests.dir/mesh/test_boundary_factory.cxx.o CMakeFiles/serial_tests.dir/mesh/test_boutmesh.cxx.o CMakeFiles/serial_tests.dir/mesh/test_coordinates.cxx.o CMakeFiles/serial_tests.dir/mesh/test_coordinates_accessor.cxx.o CMakeFiles/serial_tests.dir/mesh/test_interpolation.cxx.o CMakeFiles/serial_tests.dir/mesh/test_mesh.cxx.o CMakeFiles/serial_tests.dir/mesh/test_paralleltransform.cxx.o CMakeFiles/serial_tests.dir/solver/test_fakesolver.cxx.o CMakeFiles/serial_tests.dir/solver/test_solver.cxx.o CMakeFiles/serial_tests.dir/solver/test_solverfactory.cxx.o CMakeFiles/serial_tests.dir/sys/test_boutexception.cxx.o CMakeFiles/serial_tests.dir/sys/test_expressionparser.cxx.o CMakeFiles/serial_tests.dir/sys/test_msg_stack.cxx.o CMakeFiles/serial_tests.dir/sys/test_options.cxx.o CMakeFiles/serial_tests.dir/sys/test_options_fields.cxx.o CMakeFiles/serial_tests.dir/sys/test_options_netcdf.cxx.o CMakeFiles/serial_tests.dir/sys/test_optionsreader.cxx.o CMakeFiles/serial_tests.dir/sys/test_output.cxx.o CMakeFiles/serial_tests.dir/sys/test_range.cxx.o CMakeFiles/serial_tests.dir/sys/test_timer.cxx.o CMakeFiles/serial_tests.dir/sys/test_type_name.cxx.o CMakeFiles/serial_tests.dir/sys/test_utils.cxx.o CMakeFiles/serial_tests.dir/sys/test_variant.cxx.o CMakeFiles/serial_tests.dir/sys/test_raja.cxx.o CMakeFiles/serial_tests.dir/test_extras.cxx.o CMakeFiles/serial_tests.dir/src/test_bout++.cxx.o -o serial_tests -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/lib ../../lib/libgmock.so.1.10.0 ../../lib/libbout++.so.5.1.0 ../../lib/libgtest.so.1.10.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.2.1 ../../lib/libpvode.so.1.0.0 ../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_cvode.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_ida.so.5.8.0 /usr/lib64/openmpi/lib/libsundials_arkode.so.4.8.0 -ldl
/usr/bin/ld: CMakeFiles/serial_tests.dir/sys/test_options_netcdf.cxx.o: in function `OptionsNetCDFTest::OptionsNetCDFTest()':
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make -f CMakeFiles/check-unit-tests.dir/build.make CMakeFiles/check-unit-tests.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles/check-unit-tests.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f CMakeFiles/check-unit-tests.dir/build.make CMakeFiles/check-unit-tests.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
ctest -R serial_tests --output-on-failure
Test project /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi
Start 1: serial_tests
1/1 Test #1: serial_tests ..................... Passed 1327.64 sec
100% tests passed, 0 tests failed out of 1
Total Test time (real) = 1331.23 sec
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[100%] Built target check-unit-tests
make[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles 0
make[1]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
+ SEGFAULT_SIGNALS=segv
+ make check-mms-tests
/usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 check-mms-tests
make[1]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
/usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.1.0 -B/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles 33
make -f CMakeFiles/Makefile2 CMakeFiles/check-mms-tests.dir/all
make[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE/CMakeFiles/pvpre.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make[3]: Nothing to be done for 'externalpackages/PVODE/CMakeFiles/pvpre.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 3%] Built target pvpre
make -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/externalpackages/PVODE/CMakeFiles/pvode.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make[3]: Nothing to be done for 'externalpackages/PVODE/CMakeFiles/pvode.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 9%] Built target pvode
make -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles/bout++.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make[3]: Nothing to be done for 'CMakeFiles/bout++.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 93%] Built target bout++
make -f tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build.make tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d-y /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/wave-1d-y /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build.make tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make[3]: Nothing to be done for 'tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 96%] Built target MMS-wave-1d-y
make -f tests/MMS/advection/CMakeFiles/MMS-advection.dir/build.make tests/MMS/advection/CMakeFiles/MMS-advection.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/advection /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/advection /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/advection/CMakeFiles/MMS-advection.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/MMS/advection/CMakeFiles/MMS-advection.dir/build.make tests/MMS/advection/CMakeFiles/MMS-advection.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make[3]: Nothing to be done for 'tests/MMS/advection/CMakeFiles/MMS-advection.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 96%] Built target MMS-advection
make -f tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build.make tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/diffusion /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/diffusion /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build.make tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make[3]: Nothing to be done for 'tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[ 96%] Built target MMS-diffusion
make -f tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build.make tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/spatial/fci /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/spatial/fci /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build.make tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make[3]: Nothing to be done for 'tests/MMS/spatial/fci/CMakeFiles/MMS-spatial-fci.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[100%] Built target MMS-spatial-fci
make -f tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build.make tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/tests/MMS/wave-1d /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/wave-1d /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build.make tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make[3]: Nothing to be done for 'tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[100%] Built target MMS-wave-1d
make -f CMakeFiles/build-check-mms-tests.dir/build.make CMakeFiles/build-check-mms-tests.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles/build-check-mms-tests.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f CMakeFiles/build-check-mms-tests.dir/build.make CMakeFiles/build-check-mms-tests.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make[3]: Nothing to be done for 'CMakeFiles/build-check-mms-tests.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
[100%] Built target build-check-mms-tests
make -f CMakeFiles/check-mms-tests.dir/build.make CMakeFiles/check-mms-tests.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0 /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/CMakeFiles/check-mms-tests.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make -f CMakeFiles/check-mms-tests.dir/build.make CMakeFiles/check-mms-tests.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
ctest -R MMS- --output-on-failure
Test project /builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi
Start 52: MMS-diffusion
1/8 Test #52: MMS-diffusion ....................***Timeout 903.41 sec
rm: cannot remove 'data/BOUT.dmp.*.nc': No such file or directory
Start 53: MMS-spatial-fci
2/8 Test #53: MMS-spatial-fci ..................***Timeout 902.26 sec
/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi/tests/MMS/spatial/fci/runtest:167: SyntaxWarning: invalid escape sequence '\i'
label="{} $l_\inf$".format(method_orders[nslice]["name"]),
Start 54: MMS-wave-1d
3/8 Test #54: MMS-wave-1d ......................***Timeout 901.85 sec
rm: cannot remove 'data/BOUT.dmp.*.nc': No such file or directory
Start 55: MMS-wave-1d-y
4/8 Test #55: MMS-wave-1d-y ....................***Timeout 901.01 sec
rm: cannot remove 'data/BOUT.dmp.*.nc': No such file or directory
Start 56: MMS-bracket
5/8 Test #56: MMS-bracket ...................... Passed 100.75 sec
Start 57: MMS-derivatives3
6/8 Test #57: MMS-derivatives3 ................. Passed 201.84 sec
Start 58: MMS-shiftedmetricinterp
7/8 Test #58: MMS-shiftedmetricinterp .......... Passed 498.07 sec
Start 59: MMS-upwinding3
8/8 Test #59: MMS-upwinding3 ................... Passed 245.65 sec
50% tests passed, 4 tests failed out of 8
Total Test time (real) = 4659.89 sec
The following tests FAILED:
52 - MMS-diffusion (Timeout)
53 - MMS-spatial-fci (Timeout)
54 - MMS-wave-1d (Timeout)
55 - MMS-wave-1d-y (Timeout)
Errors while running CTest
make[3]: *** [CMakeFiles/check-mms-tests.dir/build.make:73: CMakeFiles/check-mms-tests] Error 8
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make[2]: *** [CMakeFiles/Makefile2:2796: CMakeFiles/check-mms-tests.dir/all] Error 2
make[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make[1]: *** [CMakeFiles/Makefile2:2803: CMakeFiles/check-mms-tests.dir/rule] Error 2
make[1]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.1.0/build_openmpi'
make: *** [Makefile:273: check-mms-tests] Error 2
++ exit 1
error: Bad exit status from /var/tmp/rpm-tmp.LSBa1P (%check)
RPM build errors:
Bad exit status from /var/tmp/rpm-tmp.LSBa1P (%check)
Child return code was: 1
EXCEPTION: [Error('Command failed: \n # bash --login -c /usr/bin/rpmbuild -bb --noclean --target riscv64 --nodeps /builddir/build/SPECS/bout++.spec\n', 1)]
Traceback (most recent call last):
File "/usr/lib/python3.11/site-packages/mockbuild/trace_decorator.py", line 93, in trace
result = func(*args, **kw)
^^^^^^^^^^^^^^^^^
File "/usr/lib/python3.11/site-packages/mockbuild/util.py", line 597, in do_with_status
raise exception.Error("Command failed: \n # %s\n%s" % (command, output), child.returncode)
mockbuild.exception.Error: Command failed:
# bash --login -c /usr/bin/rpmbuild -bb --noclean --target riscv64 --nodeps /builddir/build/SPECS/bout++.spec