Mock Version: 5.2 Mock Version: 5.2 Mock Version: 5.2 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target noarch --nodeps /builddir/build/SPECS/python-neurom.spec'], chrootPath='/var/lib/mock/f39-build-2273863-54990/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=864000uid=997gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target noarch --nodeps /builddir/build/SPECS/python-neurom.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: noarch Building for target noarch setting SOURCE_DATE_EPOCH=1705795200 Wrote: /builddir/build/SRPMS/python-neurom-3.2.5-1.fc39.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target noarch --nodeps /builddir/build/SPECS/python-neurom.spec'], chrootPath='/var/lib/mock/f39-build-2273863-54990/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=864000uid=997gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueraiseExc=FalseprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target noarch --nodeps /builddir/build/SPECS/python-neurom.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: noarch Building for target noarch setting SOURCE_DATE_EPOCH=1705795200 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.l02R2W + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf NeuroM-3.2.5 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/NeuroM-3.2.5.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd NeuroM-3.2.5 + rm -rf /builddir/build/BUILD/NeuroM-3.2.5-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/NeuroM-3.2.5-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP examples/ recursedown('examples/') examples/boxplot.py: no change examples/density_plot.py: no change examples/end_to_end_distance.py: updating examples/extract_distribution.py: updating examples/features_graph_table.py: updating examples/get_features.py: updating examples/histogram.py: no change examples/iteration_analysis.py: updating examples/nl_fst_compat.py: updating examples/plot_features.py: updating examples/plot_somas.py: updating examples/radius_of_gyration.py: updating examples/section_ids.py: updating examples/soma_radius_fit.py: updating examples/synthesis_json.py: updating + sed -i 's|graft neurom/config|graft neurom/apps/config|' MANIFEST.in + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.ma36Qe + umask 022 + cd /builddir/build/BUILD + cd NeuroM-3.2.5 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.2.5 + SETUPTOOLS_SCM_PRETEND_VERSION=3.2.5 + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/NeuroM-3.2.5/.pyproject-builddir + echo -n + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/NeuroM-3.2.5/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/NeuroM-3.2.5/pyproject-wheeldir --output /builddir/build/BUILD/python-neurom-3.2.5-1.fc39.noarch-pyproject-buildrequires -t -x plotly Handling setuptools>=42 from build-system.requires Requirement not satisfied: setuptools>=42 Handling wheel from build-system.requires Requirement not satisfied: wheel Exiting dependency generation pass: build backend + cat /builddir/build/BUILD/python-neurom-3.2.5-1.fc39.noarch-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-neurom-3.2.5-1.fc39.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target noarch --nodeps /builddir/build/SPECS/python-neurom.spec'], chrootPath='/var/lib/mock/f39-build-2273863-54990/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=864000uid=997gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueraiseExc=FalseprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target noarch --nodeps /builddir/build/SPECS/python-neurom.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: noarch Building for target noarch setting SOURCE_DATE_EPOCH=1705795200 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.MU1z8h + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf NeuroM-3.2.5 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/NeuroM-3.2.5.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd NeuroM-3.2.5 + rm -rf /builddir/build/BUILD/NeuroM-3.2.5-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/NeuroM-3.2.5-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP examples/ recursedown('examples/') examples/boxplot.py: no change examples/density_plot.py: no change examples/end_to_end_distance.py: updating examples/extract_distribution.py: updating examples/features_graph_table.py: updating examples/get_features.py: updating examples/histogram.py: no change examples/iteration_analysis.py: updating examples/nl_fst_compat.py: updating examples/plot_features.py: updating examples/plot_somas.py: updating examples/radius_of_gyration.py: updating examples/section_ids.py: updating examples/soma_radius_fit.py: updating examples/synthesis_json.py: updating + sed -i 's|graft neurom/config|graft neurom/apps/config|' MANIFEST.in + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.fvGYzx + umask 022 + cd /builddir/build/BUILD + cd NeuroM-3.2.5 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.2.5 + SETUPTOOLS_SCM_PRETEND_VERSION=3.2.5 + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/NeuroM-3.2.5/.pyproject-builddir + echo -n + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/NeuroM-3.2.5/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/NeuroM-3.2.5/pyproject-wheeldir --output /builddir/build/BUILD/python-neurom-3.2.5-1.fc39.noarch-pyproject-buildrequires -t -x plotly Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 67.7.2) Handling wheel from build-system.requires Requirement satisfied: wheel (installed: wheel 0.40.0) Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.40.0) Handling setuptools_scm from get_requires_for_build_wheel Requirement not satisfied: setuptools_scm Exiting dependency generation pass: get_requires_for_build_wheel + cat /builddir/build/BUILD/python-neurom-3.2.5-1.fc39.noarch-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-neurom-3.2.5-1.fc39.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target noarch --nodeps /builddir/build/SPECS/python-neurom.spec'], chrootPath='/var/lib/mock/f39-build-2273863-54990/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=864000uid=997gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueraiseExc=FalseprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target noarch --nodeps /builddir/build/SPECS/python-neurom.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: noarch Building for target noarch setting SOURCE_DATE_EPOCH=1705795200 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.6jHRwg + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf NeuroM-3.2.5 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/NeuroM-3.2.5.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd NeuroM-3.2.5 + rm -rf /builddir/build/BUILD/NeuroM-3.2.5-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/NeuroM-3.2.5-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP examples/ recursedown('examples/') examples/boxplot.py: no change examples/density_plot.py: no change examples/end_to_end_distance.py: updating examples/extract_distribution.py: updating examples/features_graph_table.py: updating examples/get_features.py: updating examples/histogram.py: no change examples/iteration_analysis.py: updating examples/nl_fst_compat.py: updating examples/plot_features.py: updating examples/plot_somas.py: updating examples/radius_of_gyration.py: updating examples/section_ids.py: updating examples/soma_radius_fit.py: updating examples/synthesis_json.py: updating + sed -i 's|graft neurom/config|graft neurom/apps/config|' MANIFEST.in + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.k8gdGE + umask 022 + cd /builddir/build/BUILD + cd NeuroM-3.2.5 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.2.5 + SETUPTOOLS_SCM_PRETEND_VERSION=3.2.5 + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/NeuroM-3.2.5/.pyproject-builddir + echo -n + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/NeuroM-3.2.5/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/NeuroM-3.2.5/pyproject-wheeldir --output /builddir/build/BUILD/python-neurom-3.2.5-1.fc39.noarch-pyproject-buildrequires -t -x plotly Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 67.7.2) Handling wheel from build-system.requires Requirement satisfied: wheel (installed: wheel 0.40.0) Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.40.0) Handling setuptools_scm from get_requires_for_build_wheel Requirement satisfied: setuptools_scm (installed: setuptools_scm 7.1.0) Handling tox-current-env >= 0.0.6 from tox itself Requirement not satisfied: tox-current-env >= 0.0.6 Exiting dependency generation pass: tox itself + cat /builddir/build/BUILD/python-neurom-3.2.5-1.fc39.noarch-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-neurom-3.2.5-1.fc39.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target noarch --nodeps /builddir/build/SPECS/python-neurom.spec'], chrootPath='/var/lib/mock/f39-build-2273863-54990/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=864000uid=997gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueraiseExc=FalseprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target noarch --nodeps /builddir/build/SPECS/python-neurom.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: noarch Building for target noarch setting SOURCE_DATE_EPOCH=1705795200 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.BxjPyQ + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf NeuroM-3.2.5 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/NeuroM-3.2.5.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd NeuroM-3.2.5 + rm -rf /builddir/build/BUILD/NeuroM-3.2.5-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/NeuroM-3.2.5-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP examples/ recursedown('examples/') examples/boxplot.py: no change examples/density_plot.py: no change examples/end_to_end_distance.py: updating examples/extract_distribution.py: updating examples/features_graph_table.py: updating examples/get_features.py: updating examples/histogram.py: no change examples/iteration_analysis.py: updating examples/nl_fst_compat.py: updating examples/plot_features.py: updating examples/plot_somas.py: updating examples/radius_of_gyration.py: updating examples/section_ids.py: updating examples/soma_radius_fit.py: updating examples/synthesis_json.py: updating + sed -i 's|graft neurom/config|graft neurom/apps/config|' MANIFEST.in + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.LfTE9J + umask 022 + cd /builddir/build/BUILD + cd NeuroM-3.2.5 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.2.5 + SETUPTOOLS_SCM_PRETEND_VERSION=3.2.5 + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/NeuroM-3.2.5/.pyproject-builddir + echo -n + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/NeuroM-3.2.5/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/NeuroM-3.2.5/pyproject-wheeldir --output /builddir/build/BUILD/python-neurom-3.2.5-1.fc39.noarch-pyproject-buildrequires -t -x plotly Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 67.7.2) Handling wheel from build-system.requires Requirement satisfied: wheel (installed: wheel 0.40.0) Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.40.0) Handling setuptools_scm from get_requires_for_build_wheel Requirement satisfied: setuptools_scm (installed: setuptools_scm 7.1.0) Handling tox-current-env >= 0.0.6 from tox itself Requirement satisfied: tox-current-env >= 0.0.6 (installed: tox-current-env 0.0.11) py312: OK (0.05 seconds) congratulations :) (0.39 seconds) Handling tox from tox --print-deps-only: py312 Requirement satisfied: tox (installed: tox 4.11.1) Handling pytest>3.0 from tox --print-deps-only: py312 Requirement not satisfied: pytest>3.0 running dist_info creating neurom.egg-info writing neurom.egg-info/PKG-INFO writing dependency_links to neurom.egg-info/dependency_links.txt writing entry points to neurom.egg-info/entry_points.txt writing requirements to neurom.egg-info/requires.txt writing top-level names to neurom.egg-info/top_level.txt writing manifest file 'neurom.egg-info/SOURCES.txt' reading manifest file 'neurom.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'requirements.txt' warning: no files found matching 'requirements_dev.txt' warning: no files found matching 'README.rst' warning: no previously-included files matching '*' found under directory 'tutorial' adding license file 'LICENSE.txt' adding license file 'AUTHORS.md' writing manifest file 'neurom.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/NeuroM-3.2.5/neurom-3.2.5.dist-info' Handling click (>=7.0) from hook generated metadata: Requires-Dist (neurom) Requirement not satisfied: click (>=7.0) Handling matplotlib (>=3.2.1) from hook generated metadata: Requires-Dist (neurom) Requirement not satisfied: matplotlib (>=3.2.1) Handling morphio (>=3.3.6) from hook generated metadata: Requires-Dist (neurom) Requirement not satisfied: morphio (>=3.3.6) Handling numpy (>=1.8.0) from hook generated metadata: Requires-Dist (neurom) Requirement not satisfied: numpy (>=1.8.0) Handling pandas (>=1.0.5) from hook generated metadata: Requires-Dist (neurom) Requirement not satisfied: pandas (>=1.0.5) Handling pyyaml (>=3.10) from hook generated metadata: Requires-Dist (neurom) Requirement not satisfied: pyyaml (>=3.10) Handling scipy (>=1.2.0) from hook generated metadata: Requires-Dist (neurom) Requirement not satisfied: scipy (>=1.2.0) Handling tqdm (>=4.8.4) from hook generated metadata: Requires-Dist (neurom) Requirement not satisfied: tqdm (>=4.8.4) Handling sphinx-bluebrain-theme ; extra == 'docs' from hook generated metadata: Requires-Dist (neurom) Ignoring alien requirement: sphinx-bluebrain-theme ; extra == 'docs' Handling sphinx-autorun ; extra == 'docs' from hook generated metadata: Requires-Dist (neurom) Ignoring alien requirement: sphinx-autorun ; extra == 'docs' Handling plotly (>=3.6.0) ; extra == 'plotly' from hook generated metadata: Requires-Dist (neurom) Requirement not satisfied: plotly (>=3.6.0) ; extra == 'plotly' Handling psutil (>=5.5.1) ; extra == 'plotly' from hook generated metadata: Requires-Dist (neurom) Requirement not satisfied: psutil (>=5.5.1) ; extra == 'plotly' + cat /builddir/build/BUILD/python-neurom-3.2.5-1.fc39.noarch-pyproject-buildrequires + rm -rfv neurom-3.2.5.dist-info/ removed 'neurom-3.2.5.dist-info/LICENSE.txt' removed 'neurom-3.2.5.dist-info/entry_points.txt' removed 'neurom-3.2.5.dist-info/top_level.txt' removed 'neurom-3.2.5.dist-info/METADATA' removed 'neurom-3.2.5.dist-info/AUTHORS.md' removed directory 'neurom-3.2.5.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-neurom-3.2.5-1.fc39.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target noarch --nodeps /builddir/build/SPECS/python-neurom.spec'], chrootPath='/var/lib/mock/f39-build-2273863-54990/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=864000uid=997gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueraiseExc=FalseprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target noarch --nodeps /builddir/build/SPECS/python-neurom.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: noarch Building for target noarch setting SOURCE_DATE_EPOCH=1705795200 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.11ZxCl + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf NeuroM-3.2.5 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/NeuroM-3.2.5.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd NeuroM-3.2.5 + rm -rf /builddir/build/BUILD/NeuroM-3.2.5-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/NeuroM-3.2.5-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP examples/ recursedown('examples/') examples/boxplot.py: no change examples/density_plot.py: no change examples/end_to_end_distance.py: updating examples/extract_distribution.py: updating examples/features_graph_table.py: updating examples/get_features.py: updating examples/histogram.py: no change examples/iteration_analysis.py: updating examples/nl_fst_compat.py: updating examples/plot_features.py: updating examples/plot_somas.py: updating examples/radius_of_gyration.py: updating examples/section_ids.py: updating examples/soma_radius_fit.py: updating examples/synthesis_json.py: updating + sed -i 's|graft neurom/config|graft neurom/apps/config|' MANIFEST.in + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.UAD2Wz + umask 022 + cd /builddir/build/BUILD + cd NeuroM-3.2.5 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.2.5 + SETUPTOOLS_SCM_PRETEND_VERSION=3.2.5 + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/NeuroM-3.2.5/.pyproject-builddir + echo -n + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/NeuroM-3.2.5/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/NeuroM-3.2.5/pyproject-wheeldir --output /builddir/build/BUILD/python-neurom-3.2.5-1.fc39.noarch-pyproject-buildrequires -t -x plotly Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 67.7.2) Handling wheel from build-system.requires Requirement satisfied: wheel (installed: wheel 0.40.0) Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.40.0) Handling setuptools_scm from get_requires_for_build_wheel Requirement satisfied: setuptools_scm (installed: setuptools_scm 7.1.0) Handling tox-current-env >= 0.0.6 from tox itself Requirement satisfied: tox-current-env >= 0.0.6 (installed: tox-current-env 0.0.11) py312: OK (0.04 seconds) congratulations :) (0.39 seconds) Handling tox from tox --print-deps-only: py312 Requirement satisfied: tox (installed: tox 4.11.1) Handling pytest>3.0 from tox --print-deps-only: py312 Requirement satisfied: pytest>3.0 (installed: pytest 7.3.2) running dist_info creating neurom.egg-info writing neurom.egg-info/PKG-INFO writing dependency_links to neurom.egg-info/dependency_links.txt writing entry points to neurom.egg-info/entry_points.txt writing requirements to neurom.egg-info/requires.txt writing top-level names to neurom.egg-info/top_level.txt writing manifest file 'neurom.egg-info/SOURCES.txt' reading manifest file 'neurom.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'requirements.txt' warning: no files found matching 'requirements_dev.txt' warning: no files found matching 'README.rst' warning: no previously-included files matching '*' found under directory 'tutorial' adding license file 'LICENSE.txt' adding license file 'AUTHORS.md' writing manifest file 'neurom.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/NeuroM-3.2.5/neurom-3.2.5.dist-info' Handling click (>=7.0) from hook generated metadata: Requires-Dist (neurom) Requirement satisfied: click (>=7.0) (installed: click 8.1.3) Handling matplotlib (>=3.2.1) from hook generated metadata: Requires-Dist (neurom) Requirement satisfied: matplotlib (>=3.2.1) (installed: matplotlib 3.8.2) Handling morphio (>=3.3.6) from hook generated metadata: Requires-Dist (neurom) Requirement satisfied: morphio (>=3.3.6) (installed: morphio 3.3.7) Handling numpy (>=1.8.0) from hook generated metadata: Requires-Dist (neurom) Requirement satisfied: numpy (>=1.8.0) (installed: numpy 1.26.0) Handling pandas (>=1.0.5) from hook generated metadata: Requires-Dist (neurom) Requirement satisfied: pandas (>=1.0.5) (installed: pandas 1.5.3) Handling pyyaml (>=3.10) from hook generated metadata: Requires-Dist (neurom) Requirement satisfied: pyyaml (>=3.10) (installed: pyyaml 6.0.1) Handling scipy (>=1.2.0) from hook generated metadata: Requires-Dist (neurom) Requirement satisfied: scipy (>=1.2.0) (installed: scipy 1.11.3) Handling tqdm (>=4.8.4) from hook generated metadata: Requires-Dist (neurom) Requirement satisfied: tqdm (>=4.8.4) (installed: tqdm 4.66.1) Handling sphinx-bluebrain-theme ; extra == 'docs' from hook generated metadata: Requires-Dist (neurom) Ignoring alien requirement: sphinx-bluebrain-theme ; extra == 'docs' Handling sphinx-autorun ; extra == 'docs' from hook generated metadata: Requires-Dist (neurom) Ignoring alien requirement: sphinx-autorun ; extra == 'docs' Handling plotly (>=3.6.0) ; extra == 'plotly' from hook generated metadata: Requires-Dist (neurom) Requirement satisfied: plotly (>=3.6.0) ; extra == 'plotly' (installed: plotly 5.9.0) Handling psutil (>=5.5.1) ; extra == 'plotly' from hook generated metadata: Requires-Dist (neurom) Requirement satisfied: psutil (>=5.5.1) ; extra == 'plotly' (installed: psutil 5.9.5) + cat /builddir/build/BUILD/python-neurom-3.2.5-1.fc39.noarch-pyproject-buildrequires + rm -rfv neurom-3.2.5.dist-info/ removed 'neurom-3.2.5.dist-info/LICENSE.txt' removed 'neurom-3.2.5.dist-info/entry_points.txt' removed 'neurom-3.2.5.dist-info/top_level.txt' removed 'neurom-3.2.5.dist-info/METADATA' removed 'neurom-3.2.5.dist-info/AUTHORS.md' removed directory 'neurom-3.2.5.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-neurom-3.2.5-1.fc39.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --noclean --target noarch --nodeps /builddir/build/SPECS/python-neurom.spec'], chrootPath='/var/lib/mock/f39-build-2273863-54990/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=864000uid=997gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --noclean --target noarch --nodeps /builddir/build/SPECS/python-neurom.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: noarch Building for target noarch setting SOURCE_DATE_EPOCH=1705795200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.A2EelZ + umask 022 + cd /builddir/build/BUILD + cd NeuroM-3.2.5 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.2.5 + SETUPTOOLS_SCM_PRETEND_VERSION=3.2.5 + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/NeuroM-3.2.5/.pyproject-builddir + echo -n + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/NeuroM-3.2.5/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/NeuroM-3.2.5/pyproject-wheeldir --output /builddir/build/BUILD/python-neurom-3.2.5-1.fc39.noarch-pyproject-buildrequires -t -x plotly Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 67.7.2) Handling wheel from build-system.requires Requirement satisfied: wheel (installed: wheel 0.40.0) Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.40.0) Handling setuptools_scm from get_requires_for_build_wheel Requirement satisfied: setuptools_scm (installed: setuptools_scm 7.1.0) Handling tox-current-env >= 0.0.6 from tox itself Requirement satisfied: tox-current-env >= 0.0.6 (installed: tox-current-env 0.0.11) py312: OK (0.04 seconds) congratulations :) (0.53 seconds) Handling tox from tox --print-deps-only: py312 Requirement satisfied: tox (installed: tox 4.11.1) Handling pytest>3.0 from tox --print-deps-only: py312 Requirement satisfied: pytest>3.0 (installed: pytest 7.3.2) running dist_info writing neurom.egg-info/PKG-INFO writing dependency_links to neurom.egg-info/dependency_links.txt writing entry points to neurom.egg-info/entry_points.txt writing requirements to neurom.egg-info/requires.txt writing top-level names to neurom.egg-info/top_level.txt reading manifest file 'neurom.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'requirements.txt' warning: no files found matching 'requirements_dev.txt' warning: no files found matching 'README.rst' warning: no previously-included files matching '*' found under directory 'tutorial' adding license file 'LICENSE.txt' adding license file 'AUTHORS.md' writing manifest file 'neurom.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/NeuroM-3.2.5/neurom-3.2.5.dist-info' Handling click (>=7.0) from hook generated metadata: Requires-Dist (neurom) Requirement satisfied: click (>=7.0) (installed: click 8.1.3) Handling matplotlib (>=3.2.1) from hook generated metadata: Requires-Dist (neurom) Requirement satisfied: matplotlib (>=3.2.1) (installed: matplotlib 3.8.2) Handling morphio (>=3.3.6) from hook generated metadata: Requires-Dist (neurom) Requirement satisfied: morphio (>=3.3.6) (installed: morphio 3.3.7) Handling numpy (>=1.8.0) from hook generated metadata: Requires-Dist (neurom) Requirement satisfied: numpy (>=1.8.0) (installed: numpy 1.26.0) Handling pandas (>=1.0.5) from hook generated metadata: Requires-Dist (neurom) Requirement satisfied: pandas (>=1.0.5) (installed: pandas 1.5.3) Handling pyyaml (>=3.10) from hook generated metadata: Requires-Dist (neurom) Requirement satisfied: pyyaml (>=3.10) (installed: pyyaml 6.0.1) Handling scipy (>=1.2.0) from hook generated metadata: Requires-Dist (neurom) Requirement satisfied: scipy (>=1.2.0) (installed: scipy 1.11.3) Handling tqdm (>=4.8.4) from hook generated metadata: Requires-Dist (neurom) Requirement satisfied: tqdm (>=4.8.4) (installed: tqdm 4.66.1) Handling sphinx-bluebrain-theme ; extra == 'docs' from hook generated metadata: Requires-Dist (neurom) Ignoring alien requirement: sphinx-bluebrain-theme ; extra == 'docs' Handling sphinx-autorun ; extra == 'docs' from hook generated metadata: Requires-Dist (neurom) Ignoring alien requirement: sphinx-autorun ; extra == 'docs' Handling plotly (>=3.6.0) ; extra == 'plotly' from hook generated metadata: Requires-Dist (neurom) Requirement satisfied: plotly (>=3.6.0) ; extra == 'plotly' (installed: plotly 5.9.0) Handling psutil (>=5.5.1) ; extra == 'plotly' from hook generated metadata: Requires-Dist (neurom) Requirement satisfied: psutil (>=5.5.1) ; extra == 'plotly' (installed: psutil 5.9.5) + cat /builddir/build/BUILD/python-neurom-3.2.5-1.fc39.noarch-pyproject-buildrequires + rm -rfv neurom-3.2.5.dist-info/ removed 'neurom-3.2.5.dist-info/LICENSE.txt' removed 'neurom-3.2.5.dist-info/entry_points.txt' removed 'neurom-3.2.5.dist-info/top_level.txt' removed 'neurom-3.2.5.dist-info/METADATA' removed 'neurom-3.2.5.dist-info/AUTHORS.md' removed directory 'neurom-3.2.5.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.VbUTw4 + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd NeuroM-3.2.5 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.2.5 + SETUPTOOLS_SCM_PRETEND_VERSION=3.2.5 + mkdir -p /builddir/build/BUILD/NeuroM-3.2.5/.pyproject-builddir + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/NeuroM-3.2.5/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/NeuroM-3.2.5/pyproject-wheeldir Processing /builddir/build/BUILD/NeuroM-3.2.5 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) running dist_info creating /builddir/build/BUILD/NeuroM-3.2.5/.pyproject-builddir/pip-modern-metadata-_ghowcq9/neurom.egg-info writing /builddir/build/BUILD/NeuroM-3.2.5/.pyproject-builddir/pip-modern-metadata-_ghowcq9/neurom.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/NeuroM-3.2.5/.pyproject-builddir/pip-modern-metadata-_ghowcq9/neurom.egg-info/dependency_links.txt writing entry points to /builddir/build/BUILD/NeuroM-3.2.5/.pyproject-builddir/pip-modern-metadata-_ghowcq9/neurom.egg-info/entry_points.txt writing requirements to /builddir/build/BUILD/NeuroM-3.2.5/.pyproject-builddir/pip-modern-metadata-_ghowcq9/neurom.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/NeuroM-3.2.5/.pyproject-builddir/pip-modern-metadata-_ghowcq9/neurom.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/NeuroM-3.2.5/.pyproject-builddir/pip-modern-metadata-_ghowcq9/neurom.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/NeuroM-3.2.5/.pyproject-builddir/pip-modern-metadata-_ghowcq9/neurom.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'requirements.txt' warning: no files found matching 'requirements_dev.txt' warning: no files found matching 'README.rst' warning: no previously-included files matching '*' found under directory 'tutorial' adding license file 'LICENSE.txt' adding license file 'AUTHORS.md' writing manifest file '/builddir/build/BUILD/NeuroM-3.2.5/.pyproject-builddir/pip-modern-metadata-_ghowcq9/neurom.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/NeuroM-3.2.5/.pyproject-builddir/pip-modern-metadata-_ghowcq9/neurom-3.2.5.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: neurom Building wheel for neurom (pyproject.toml): started Running command Building wheel for neurom (pyproject.toml) running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/neurom copying neurom/stats.py -> build/lib/neurom copying neurom/viewer.py -> build/lib/neurom copying neurom/__init__.py -> build/lib/neurom copying neurom/morphmath.py -> build/lib/neurom copying neurom/utils.py -> build/lib/neurom copying neurom/exceptions.py -> build/lib/neurom creating build/lib/tests creating build/lib/tests/features copying tests/features/test_get_features.py -> build/lib/tests/features copying tests/features/test_bifurcation.py -> build/lib/tests/features copying tests/features/test_morphology.py -> build/lib/tests/features copying tests/features/__init__.py -> build/lib/tests/features copying tests/features/test_neurite.py -> build/lib/tests/features copying tests/features/test_section.py -> build/lib/tests/features creating build/lib/neurom/features copying neurom/features/population.py -> build/lib/neurom/features copying neurom/features/bifurcationfunc.py -> build/lib/neurom/features copying neurom/features/sectionfunc.py -> build/lib/neurom/features copying neurom/features/morphology.py -> build/lib/neurom/features copying neurom/features/neurite.py -> build/lib/neurom/features copying neurom/features/__init__.py -> build/lib/neurom/features copying neurom/features/section.py -> build/lib/neurom/features copying neurom/features/bifurcation.py -> build/lib/neurom/features creating build/lib/neurom/check copying neurom/check/morphtree.py -> build/lib/neurom/check copying neurom/check/runner.py -> build/lib/neurom/check copying neurom/check/__init__.py -> build/lib/neurom/check copying neurom/check/morphology_checks.py -> build/lib/neurom/check copying neurom/check/neuron_checks.py -> build/lib/neurom/check creating build/lib/neurom/view copying neurom/view/matplotlib_utils.py -> build/lib/neurom/view copying neurom/view/__init__.py -> build/lib/neurom/view copying neurom/view/dendrogram.py -> build/lib/neurom/view copying neurom/view/plotly_impl.py -> build/lib/neurom/view copying neurom/view/matplotlib_impl.py -> build/lib/neurom/view creating build/lib/neurom/io copying neurom/io/__init__.py -> build/lib/neurom/io copying neurom/io/utils.py -> build/lib/neurom/io creating build/lib/neurom/apps copying neurom/apps/morph_stats.py -> build/lib/neurom/apps copying neurom/apps/__init__.py -> build/lib/neurom/apps copying neurom/apps/annotate.py -> build/lib/neurom/apps copying neurom/apps/cli.py -> build/lib/neurom/apps copying neurom/apps/morph_check.py -> build/lib/neurom/apps creating build/lib/neurom/core copying neurom/core/neuron.py -> build/lib/neurom/core copying neurom/core/population.py -> build/lib/neurom/core copying neurom/core/soma.py -> build/lib/neurom/core copying neurom/core/morphology.py -> build/lib/neurom/core copying neurom/core/__init__.py -> build/lib/neurom/core copying neurom/core/dataformat.py -> build/lib/neurom/core copying neurom/core/types.py -> build/lib/neurom/core creating build/lib/neurom/geom copying neurom/geom/__init__.py -> build/lib/neurom/geom copying neurom/geom/transform.py -> build/lib/neurom/geom running egg_info writing neurom.egg-info/PKG-INFO writing dependency_links to neurom.egg-info/dependency_links.txt writing entry points to neurom.egg-info/entry_points.txt writing requirements to neurom.egg-info/requires.txt writing top-level names to neurom.egg-info/top_level.txt reading manifest file 'neurom.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'requirements.txt' warning: no files found matching 'requirements_dev.txt' warning: no files found matching 'README.rst' warning: no previously-included files matching '*' found under directory 'tutorial' adding license file 'LICENSE.txt' adding license file 'AUTHORS.md' writing manifest file 'neurom.egg-info/SOURCES.txt' /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'neurom.apps.config' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'neurom.apps.config' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'neurom.apps.config' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'neurom.apps.config' to be distributed and are already explicitly excluding 'neurom.apps.config' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) creating build/lib/neurom/apps/config copying neurom/apps/config/morph_check.yaml -> build/lib/neurom/apps/config copying neurom/apps/config/morph_stats.yaml -> build/lib/neurom/apps/config installing to build/bdist.linux-riscv64/wheel running install running install_lib creating build/bdist.linux-riscv64 creating build/bdist.linux-riscv64/wheel creating build/bdist.linux-riscv64/wheel/tests creating build/bdist.linux-riscv64/wheel/tests/features copying build/lib/tests/features/test_get_features.py -> build/bdist.linux-riscv64/wheel/tests/features copying build/lib/tests/features/test_bifurcation.py -> build/bdist.linux-riscv64/wheel/tests/features copying build/lib/tests/features/test_morphology.py -> build/bdist.linux-riscv64/wheel/tests/features copying build/lib/tests/features/__init__.py -> build/bdist.linux-riscv64/wheel/tests/features copying build/lib/tests/features/test_neurite.py -> build/bdist.linux-riscv64/wheel/tests/features copying build/lib/tests/features/test_section.py -> build/bdist.linux-riscv64/wheel/tests/features creating build/bdist.linux-riscv64/wheel/neurom creating build/bdist.linux-riscv64/wheel/neurom/features copying build/lib/neurom/features/population.py -> build/bdist.linux-riscv64/wheel/neurom/features copying build/lib/neurom/features/bifurcationfunc.py -> build/bdist.linux-riscv64/wheel/neurom/features copying build/lib/neurom/features/sectionfunc.py -> build/bdist.linux-riscv64/wheel/neurom/features copying build/lib/neurom/features/morphology.py -> build/bdist.linux-riscv64/wheel/neurom/features copying build/lib/neurom/features/neurite.py -> build/bdist.linux-riscv64/wheel/neurom/features copying build/lib/neurom/features/__init__.py -> build/bdist.linux-riscv64/wheel/neurom/features copying build/lib/neurom/features/section.py -> build/bdist.linux-riscv64/wheel/neurom/features copying build/lib/neurom/features/bifurcation.py -> build/bdist.linux-riscv64/wheel/neurom/features copying build/lib/neurom/stats.py -> build/bdist.linux-riscv64/wheel/neurom creating build/bdist.linux-riscv64/wheel/neurom/check copying build/lib/neurom/check/morphtree.py -> build/bdist.linux-riscv64/wheel/neurom/check copying build/lib/neurom/check/runner.py -> build/bdist.linux-riscv64/wheel/neurom/check copying build/lib/neurom/check/__init__.py -> build/bdist.linux-riscv64/wheel/neurom/check copying build/lib/neurom/check/morphology_checks.py -> build/bdist.linux-riscv64/wheel/neurom/check copying build/lib/neurom/check/neuron_checks.py -> build/bdist.linux-riscv64/wheel/neurom/check creating build/bdist.linux-riscv64/wheel/neurom/view copying build/lib/neurom/view/matplotlib_utils.py -> build/bdist.linux-riscv64/wheel/neurom/view copying build/lib/neurom/view/__init__.py -> build/bdist.linux-riscv64/wheel/neurom/view copying build/lib/neurom/view/dendrogram.py -> build/bdist.linux-riscv64/wheel/neurom/view copying build/lib/neurom/view/plotly_impl.py -> build/bdist.linux-riscv64/wheel/neurom/view copying build/lib/neurom/view/matplotlib_impl.py -> build/bdist.linux-riscv64/wheel/neurom/view copying build/lib/neurom/viewer.py -> build/bdist.linux-riscv64/wheel/neurom copying build/lib/neurom/__init__.py -> build/bdist.linux-riscv64/wheel/neurom copying build/lib/neurom/morphmath.py -> build/bdist.linux-riscv64/wheel/neurom creating build/bdist.linux-riscv64/wheel/neurom/io copying build/lib/neurom/io/__init__.py -> build/bdist.linux-riscv64/wheel/neurom/io copying build/lib/neurom/io/utils.py -> build/bdist.linux-riscv64/wheel/neurom/io copying build/lib/neurom/utils.py -> build/bdist.linux-riscv64/wheel/neurom creating build/bdist.linux-riscv64/wheel/neurom/apps copying build/lib/neurom/apps/morph_stats.py -> build/bdist.linux-riscv64/wheel/neurom/apps copying build/lib/neurom/apps/__init__.py -> build/bdist.linux-riscv64/wheel/neurom/apps copying build/lib/neurom/apps/annotate.py -> build/bdist.linux-riscv64/wheel/neurom/apps copying build/lib/neurom/apps/cli.py -> build/bdist.linux-riscv64/wheel/neurom/apps copying build/lib/neurom/apps/morph_check.py -> build/bdist.linux-riscv64/wheel/neurom/apps creating build/bdist.linux-riscv64/wheel/neurom/apps/config copying build/lib/neurom/apps/config/morph_stats.yaml -> build/bdist.linux-riscv64/wheel/neurom/apps/config copying build/lib/neurom/apps/config/morph_check.yaml -> build/bdist.linux-riscv64/wheel/neurom/apps/config creating build/bdist.linux-riscv64/wheel/neurom/core copying build/lib/neurom/core/neuron.py -> build/bdist.linux-riscv64/wheel/neurom/core copying build/lib/neurom/core/population.py -> build/bdist.linux-riscv64/wheel/neurom/core copying build/lib/neurom/core/soma.py -> build/bdist.linux-riscv64/wheel/neurom/core copying build/lib/neurom/core/morphology.py -> build/bdist.linux-riscv64/wheel/neurom/core copying build/lib/neurom/core/__init__.py -> build/bdist.linux-riscv64/wheel/neurom/core copying build/lib/neurom/core/dataformat.py -> build/bdist.linux-riscv64/wheel/neurom/core copying build/lib/neurom/core/types.py -> build/bdist.linux-riscv64/wheel/neurom/core creating build/bdist.linux-riscv64/wheel/neurom/geom copying build/lib/neurom/geom/__init__.py -> build/bdist.linux-riscv64/wheel/neurom/geom copying build/lib/neurom/geom/transform.py -> build/bdist.linux-riscv64/wheel/neurom/geom copying build/lib/neurom/exceptions.py -> build/bdist.linux-riscv64/wheel/neurom running install_egg_info Copying neurom.egg-info to build/bdist.linux-riscv64/wheel/neurom-3.2.5-py3.12.egg-info running install_scripts creating build/bdist.linux-riscv64/wheel/neurom-3.2.5.dist-info/WHEEL creating '/builddir/build/BUILD/NeuroM-3.2.5/.pyproject-builddir/pip-wheel-p0_r_15q/.tmp-39x5shss/neurom-3.2.5-py3-none-any.whl' and adding 'build/bdist.linux-riscv64/wheel' to it adding 'neurom/__init__.py' adding 'neurom/exceptions.py' adding 'neurom/morphmath.py' adding 'neurom/stats.py' adding 'neurom/utils.py' adding 'neurom/viewer.py' adding 'neurom/apps/__init__.py' adding 'neurom/apps/annotate.py' adding 'neurom/apps/cli.py' adding 'neurom/apps/morph_check.py' adding 'neurom/apps/morph_stats.py' adding 'neurom/apps/config/morph_check.yaml' adding 'neurom/apps/config/morph_stats.yaml' adding 'neurom/check/__init__.py' adding 'neurom/check/morphology_checks.py' adding 'neurom/check/morphtree.py' adding 'neurom/check/neuron_checks.py' adding 'neurom/check/runner.py' adding 'neurom/core/__init__.py' adding 'neurom/core/dataformat.py' adding 'neurom/core/morphology.py' adding 'neurom/core/neuron.py' adding 'neurom/core/population.py' adding 'neurom/core/soma.py' adding 'neurom/core/types.py' adding 'neurom/features/__init__.py' adding 'neurom/features/bifurcation.py' adding 'neurom/features/bifurcationfunc.py' adding 'neurom/features/morphology.py' adding 'neurom/features/neurite.py' adding 'neurom/features/population.py' adding 'neurom/features/section.py' adding 'neurom/features/sectionfunc.py' adding 'neurom/geom/__init__.py' adding 'neurom/geom/transform.py' adding 'neurom/io/__init__.py' adding 'neurom/io/utils.py' adding 'neurom/view/__init__.py' adding 'neurom/view/dendrogram.py' adding 'neurom/view/matplotlib_impl.py' adding 'neurom/view/matplotlib_utils.py' adding 'neurom/view/plotly_impl.py' adding 'tests/features/__init__.py' adding 'tests/features/test_bifurcation.py' adding 'tests/features/test_get_features.py' adding 'tests/features/test_morphology.py' adding 'tests/features/test_neurite.py' adding 'tests/features/test_section.py' adding 'neurom-3.2.5.dist-info/AUTHORS.md' adding 'neurom-3.2.5.dist-info/LICENSE.txt' adding 'neurom-3.2.5.dist-info/METADATA' adding 'neurom-3.2.5.dist-info/WHEEL' adding 'neurom-3.2.5.dist-info/entry_points.txt' adding 'neurom-3.2.5.dist-info/top_level.txt' adding 'neurom-3.2.5.dist-info/RECORD' removing build/bdist.linux-riscv64/wheel Building wheel for neurom (pyproject.toml): finished with status 'done' Created wheel for neurom: filename=neurom-3.2.5-py3-none-any.whl size=126948 sha256=5158c59374647dc56a056a3f04276130b8d498ceaa0b2aa81713a3a9704ae513 Stored in directory: /builddir/.cache/pip/wheels/fb/f2/48/b64d4579b77dd97b3033f0c236d23dc74b8f7f94ea5b2477ce Successfully built neurom + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.4VgIlY + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/python-neurom-3.2.5-1.fc39.noarch '!=' / ']' + rm -rf /builddir/build/BUILDROOT/python-neurom-3.2.5-1.fc39.noarch ++ dirname /builddir/build/BUILDROOT/python-neurom-3.2.5-1.fc39.noarch + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/python-neurom-3.2.5-1.fc39.noarch + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd NeuroM-3.2.5 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.2.5 + SETUPTOOLS_SCM_PRETEND_VERSION=3.2.5 ++ ls /builddir/build/BUILD/NeuroM-3.2.5/pyproject-wheeldir/neurom-3.2.5-py3-none-any.whl ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=neurom==3.2.5 + '[' -z neurom==3.2.5 ']' + TMPDIR=/builddir/build/BUILD/NeuroM-3.2.5/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/python-neurom-3.2.5-1.fc39.noarch --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/NeuroM-3.2.5/pyproject-wheeldir neurom==3.2.5 Using pip 23.2.1 from /usr/lib/python3.12/site-packages/pip (python 3.12) Looking in links: /builddir/build/BUILD/NeuroM-3.2.5/pyproject-wheeldir Processing ./pyproject-wheeldir/neurom-3.2.5-py3-none-any.whl Installing collected packages: neurom Creating /builddir/build/BUILDROOT/python-neurom-3.2.5-1.fc39.noarch/usr/bin changing mode of /builddir/build/BUILDROOT/python-neurom-3.2.5-1.fc39.noarch/usr/bin/neurom to 755 Successfully installed neurom-3.2.5 + '[' -d /builddir/build/BUILDROOT/python-neurom-3.2.5-1.fc39.noarch/usr/bin ']' + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP /builddir/build/BUILDROOT/python-neurom-3.2.5-1.fc39.noarch/usr/bin/neurom /builddir/build/BUILDROOT/python-neurom-3.2.5-1.fc39.noarch/usr/bin/neurom: updating + rm -rfv /builddir/build/BUILDROOT/python-neurom-3.2.5-1.fc39.noarch/usr/bin/__pycache__ + rm -f /builddir/build/BUILD/python-neurom-3.2.5-1.fc39.noarch-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/python-neurom-3.2.5-1.fc39.noarch/usr/lib/python3.12/site-packages ']' + site_dirs+=("/usr/lib/python3.12/site-packages") + '[' /builddir/build/BUILDROOT/python-neurom-3.2.5-1.fc39.noarch/usr/lib64/python3.12/site-packages '!=' /builddir/build/BUILDROOT/python-neurom-3.2.5-1.fc39.noarch/usr/lib/python3.12/site-packages ']' + '[' -d /builddir/build/BUILDROOT/python-neurom-3.2.5-1.fc39.noarch/usr/lib64/python3.12/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/python-neurom-3.2.5-1.fc39.noarch$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.12/site-packages/neurom-3.2.5.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/python-neurom-3.2.5-1.fc39.noarch/usr/lib/python3.12/site-packages/neurom-3.2.5.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/python-neurom-3.2.5-1.fc39.noarch --record /builddir/build/BUILDROOT/python-neurom-3.2.5-1.fc39.noarch/usr/lib/python3.12/site-packages/neurom-3.2.5.dist-info/RECORD --output /builddir/build/BUILD/python-neurom-3.2.5-1.fc39.noarch-pyproject-record + rm -fv /builddir/build/BUILDROOT/python-neurom-3.2.5-1.fc39.noarch/usr/lib/python3.12/site-packages/neurom-3.2.5.dist-info/RECORD removed '/builddir/build/BUILDROOT/python-neurom-3.2.5-1.fc39.noarch/usr/lib/python3.12/site-packages/neurom-3.2.5.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/python-neurom-3.2.5-1.fc39.noarch/usr/lib/python3.12/site-packages/neurom-3.2.5.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/python-neurom-3.2.5-1.fc39.noarch/usr/lib/python3.12/site-packages/neurom-3.2.5.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/python-neurom-3.2.5-1.fc39.noarch-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_PERCENTAGES_COUNT=2 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-neurom-3.2.5-1.fc39.noarch-pyproject-files --output-modules /builddir/build/BUILD/python-neurom-3.2.5-1.fc39.noarch-pyproject-modules --buildroot /builddir/build/BUILDROOT/python-neurom-3.2.5-1.fc39.noarch --sitelib /usr/lib/python3.12/site-packages --sitearch /usr/lib64/python3.12/site-packages --python-version 3.12 --pyproject-record /builddir/build/BUILD/python-neurom-3.2.5-1.fc39.noarch-pyproject-record --prefix /usr neurom + rm -rf /builddir/build/BUILDROOT/python-neurom-3.2.5-1.fc39.noarch//usr/lib/python3.12/site-packages/tests/ + /usr/bin/find-debuginfo -j64 --strict-build-id -m -i --build-id-seed 3.2.5-1.fc39 --unique-debug-suffix -3.2.5-1.fc39.noarch --unique-debug-src-base python-neurom-3.2.5-1.fc39.noarch --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/NeuroM-3.2.5 find-debuginfo: starting Extracting debug info from 0 files Creating .debug symlinks for symlinks to ELF files find: ‘debug’: No such file or directory find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j64 Bytecompiling .py files below /builddir/build/BUILDROOT/python-neurom-3.2.5-1.fc39.noarch/usr/lib/python3.12 using python3.12 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.0sd4vJ + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd NeuroM-3.2.5 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.2.5 + SETUPTOOLS_SCM_PRETEND_VERSION=3.2.5 + k='not test_extract_dataframe_multiproc' + k='not test_extract_dataframe_multiproc and not test_extract_stats_scalar_feature' + k='not test_extract_dataframe_multiproc and not test_extract_stats_scalar_feature and not test_markers' + k='not test_extract_dataframe_multiproc and not test_extract_stats_scalar_feature and not test_markers and not test_single_neurite_no_soma' + k='not test_extract_dataframe_multiproc and not test_extract_stats_scalar_feature and not test_markers and not test_single_neurite_no_soma and not test_skip_header' + TOX_TESTENV_PASSENV='*' + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + PATH=/builddir/build/BUILDROOT/python-neurom-3.2.5-1.fc39.noarch/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/python-neurom-3.2.5-1.fc39.noarch/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/python-neurom-3.2.5-1.fc39.noarch/usr/lib/python3.12/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/NeuroM-3.2.5/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=64 + HOSTNAME=rpmbuild + /usr/bin/python3 -m tox --current-env -q --recreate -e py312 -- -k 'not test_extract_dataframe_multiproc and not test_extract_stats_scalar_feature and not test_markers and not test_single_neurite_no_soma and not test_skip_header' ============================= test session starts ============================== platform linux -- Python 3.12.0, pytest-7.3.2, pluggy-1.2.0 cachedir: .tox/py312/.pytest_cache rootdir: /builddir/build/BUILD/NeuroM-3.2.5 collected 474 items / 5 deselected / 469 selected tests/test_import.py . [ 0%] tests/test_morphmath.py ............................................... [ 10%] tests/test_stats.py ..................... [ 14%] tests/test_utils.py ...... [ 15%] tests/test_viewer.py ............. [ 18%] tests/apps/test_annotate.py .. [ 19%] tests/apps/test_cli.py ......... [ 21%] tests/apps/test_config.py .. [ 21%] tests/apps/test_morph_stats.py ................ [ 24%] tests/check/test_check.py . [ 25%] tests/check/test_morphology_checks.py .............................. [ 31%] tests/check/test_morphtree.py ...... [ 32%] tests/check/test_runner.py .......... [ 34%] tests/core/test_dataformat.py .. [ 35%] tests/core/test_iter.py ................... [ 39%] tests/core/test_neurite.py ...... [ 40%] tests/core/test_neuron.py ........ [ 42%] tests/core/test_population.py ........... [ 44%] tests/core/test_section.py .... [ 45%] tests/core/test_soma.py ......F.... [ 47%] tests/core/test_types.py .... [ 48%] tests/features/test_bifurcation.py ...... [ 50%] tests/features/test_get_features.py .................................... [ 57%] .................... [ 62%] tests/features/test_morphology.py .......................... [ 67%] tests/features/test_neurite.py ............................... [ 74%] tests/features/test_section.py .................. [ 78%] tests/geom/test_geom.py ...... [ 79%] tests/geom/test_transform.py .................. [ 83%] tests/io/test_io_utils.py ......................... [ 88%] tests/io/test_neurolucida.py ......... [ 90%] tests/io/test_swc_reader.py ......... [ 92%] tests/view/test_dendrogram.py ....... [ 93%] tests/view/test_matplotlib_impl.py .............. [ 96%] tests/view/test_matplotlib_utils.py ............ [ 99%] tests/view/test_plotly_impl.py ... [100%] =================================== FAILURES =================================== _____________________ test_Soma_ThreePointCylinder_invalid _____________________ def test_Soma_ThreePointCylinder_invalid(): try: set_raise_warnings(True) with pytest.raises(MorphioError, match='Warning: the soma does not conform the three point soma spec'): > load_morphology(StringIO(u""" 1 1 0 0 0 1e-4 -1 2 1 0 -44 0 1e-4 1 3 1 0 +44 0 1e-4 1"""), reader='swc') tests/core/test_soma.py:104: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ morph = <_io.StringIO object at 0x3f074d7940>, reader = 'swc' def load_morphology(morph, reader=None): """Build section trees from a morphology or a h5, swc or asc file. Args: morph (str|Path|Morphology|morphio.Morphology|morphio.mut.Morphology): a morphology representation. It can be: - a filename with the h5, swc or asc extension - a NeuroM Neuron object - a morphio mutable or immutable Morphology object - a stream that can be put into a io.StreamIO object. In this case, the READER argument must be passed with the corresponding file format (asc, swc and h5) reader (str): Optional, must be provided if morphology is a stream to specify the file format (asc, swc, h5) Returns: A Morphology object Examples:: morphology = neurom.load_morphology('my_morphology_file.h5') morphology = neurom.load_morphology(morphio.Morphology('my_morphology_file.h5')) morphology = nm.load_morphology(io.StringIO('''((Dendrite) (3 -4 0 2) (3 -6 0 2) (3 -8 0 2) (3 -10 0 2) ( (0 -10 0 2) (-3 -10 0 2) | (6 -10 0 2) (9 -10 0 2) ) )'''), reader='asc') """ if isinstance(morph, (Morphology, morphio.Morphology, morphio.mut.Morphology)): return Morphology(morph) if reader: > return Morphology(_get_file(morph, reader)) ../../BUILDROOT/python-neurom-3.2.5-1.fc39.noarch/usr/lib/python3.12/site-packages/neurom/io/utils.py:163: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'Morphology' object has no attribute 'neurom_soma'") raised in repr()] Morphology object at 0x3ee5dbb890> filename = '/tmp/neurom-4lcb6d2w210fab35-90d8-4d4a-b24d-885fc432b8cb.swc' name = None def __init__(self, filename, name=None): """Morphology constructor. Args: filename (str|Path): a filename name (str): a option morphology name """ > super().__init__(filename) E morphio._morphio.MorphioError: E /tmp/neurom-4lcb6d2w210fab35-90d8-4d4a-b24d-885fc432b8cb.swc:0:warning E The non-constant columns is not offset by +/- the radius from the initial sample. ../../BUILDROOT/python-neurom-3.2.5-1.fc39.noarch/usr/lib/python3.12/site-packages/neurom/core/morphology.py:435: MorphioError During handling of the above exception, another exception occurred: def test_Soma_ThreePointCylinder_invalid(): try: set_raise_warnings(True) > with pytest.raises(MorphioError, match='Warning: the soma does not conform the three point soma spec'): E AssertionError: Regex pattern did not match. E Regex: 'Warning: the soma does not conform the three point soma spec' E Input: '\n\x1b[1;33m/tmp/neurom-4lcb6d2w210fab35-90d8-4d4a-b24d-885fc432b8cb.swc:0:warning\x1b[0m\nThe non-constant columns is not offset by +/- the radius from the initial sample.' tests/core/test_soma.py:102: AssertionError =============================== warnings summary =============================== ../../BUILDROOT/python-neurom-3.2.5-1.fc39.noarch/usr/lib/python3.12/site-packages/neurom/viewer.py:50 /builddir/build/BUILDROOT/python-neurom-3.2.5-1.fc39.noarch/usr/lib/python3.12/site-packages/neurom/viewer.py:50: NeuroMDeprecationWarning: Module `viewer` is deprecated. See the documentation's migration page. ../../../../usr/lib/python3.12/site-packages/pkg_resources/__init__.py:121 /usr/lib/python3.12/site-packages/pkg_resources/__init__.py:121: DeprecationWarning: pkg_resources is deprecated as an API tests/test_import.py::test_import_neurom /usr/lib/python3.12/site-packages/_pytest/python.py:198: PytestReturnNotNoneWarning: Expected None, but tests/test_import.py::test_import_neurom returned True, which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`? tests/test_stats.py::test_compare_two_ttest /usr/lib64/python3.12/site-packages/scipy/stats/_axis_nan_policy.py:523: RuntimeWarning: Precision loss occurred in moment calculation due to catastrophic cancellation. This occurs when the data are nearly identical. Results may be unreliable. tests/apps/test_cli.py::test_morph_stat_full_config /builddir/build/BUILDROOT/python-neurom-3.2.5-1.fc39.noarch/usr/lib/python3.12/site-packages/neurom/core/soma.py:84: UserWarning: Approximating soma volume by a sphere. SomaSimpleContour(array([[0. , 0. , 0. , 0.1], [0. , 0.2, 0. , 0.1], [0.1, 0.1, 0. , 0.1]])) tests/apps/test_morph_stats.py::test_extract_dataframe tests/apps/test_morph_stats.py::test_extract_dataframe tests/apps/test_morph_stats.py::test_extract_dataframe tests/apps/test_morph_stats.py::test_extract_dataframe tests/apps/test_morph_stats.py::test_extract_dataframe_with_kwargs /usr/lib64/python3.12/site-packages/pandas/core/algorithms.py:522: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) tests/apps/test_morph_stats.py::test_extract_dataframe /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) tests/geom/test_geom.py::test_bounding_box tests/geom/test_geom.py::test_convex_hull_points /usr/lib/python3.12/site-packages/_pytest/python.py:194: DeprecationWarning: `alltrue` is deprecated as of NumPy 1.25.0, and will be removed in NumPy 2.0. Please use `all` instead. tests/view/test_matplotlib_utils.py::test_plot_style /builddir/build/BUILDROOT/python-neurom-3.2.5-1.fc39.noarch/usr/lib/python3.12/site-packages/neurom/view/matplotlib_utils.py:223: PendingDeprecationWarning: The set_tight_layout function will be deprecated in a future version. Use set_layout_engine instead. -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========================== short test summary info ============================ FAILED tests/core/test_soma.py::test_Soma_ThreePointCylinder_invalid - Assert... ===== 1 failed, 468 passed, 5 deselected, 14 warnings in 110.79s (0:01:50) ===== py312: exit 1 (113.63 seconds) /builddir/build/BUILD/NeuroM-3.2.5> pytest -k 'not test_extract_dataframe_multiproc and not test_extract_stats_scalar_feature and not test_markers and not test_single_neurite_no_soma and not test_skip_header' pid=189513 py312: FAIL code 1 (113.80 seconds) evaluation failed :( (114.22 seconds) error: Bad exit status from /var/tmp/rpm-tmp.0sd4vJ (%check) Bad exit status from /var/tmp/rpm-tmp.0sd4vJ (%check) RPM build errors: Child return code was: 1 EXCEPTION: [Error("Command failed: \n # bash --login -c '/usr/bin/rpmbuild -ba --noprep --noclean --target noarch --nodeps /builddir/build/SPECS/python-neurom.spec'\n", 1)] Traceback (most recent call last): File "/usr/lib/python3.12/site-packages/mockbuild/trace_decorator.py", line 93, in trace result = func(*args, **kw) ^^^^^^^^^^^^^^^^^ File "/usr/lib/python3.12/site-packages/mockbuild/util.py", line 597, in do_with_status raise exception.Error("Command failed: \n # %s\n%s" % (cmd_pretty(command, env), output), child.returncode) mockbuild.exception.Error: Command failed: # bash --login -c '/usr/bin/rpmbuild -ba --noprep --noclean --target noarch --nodeps /builddir/build/SPECS/python-neurom.spec'