Mock Version: 3.0
Mock Version: 3.0
Mock Version: 3.0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/staden-io_lib.spec'], chrootPath='/var/lib/mock/f37-build-side-32-misc-devel-161229-10722/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x3fc3d57970>timeout=864000uid=996gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/staden-io_lib.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False
Building target platforms: riscv64
Building for target riscv64
setting SOURCE_DATE_EPOCH=1658534400
Wrote: /builddir/build/SRPMS/staden-io_lib-1.12.4-24.fc37.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/staden-io_lib.spec'], chrootPath='/var/lib/mock/f37-build-side-32-misc-devel-161229-10722/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x3fc3d57970>timeout=864000uid=996gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/staden-io_lib.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False
Building target platforms: riscv64
Building for target riscv64
setting SOURCE_DATE_EPOCH=1658534400
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.9KzBWA
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf io_lib-1.12.4
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/io_lib-1.12.4.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd io_lib-1.12.4
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/staden-libs-config.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ mv io_lib-config.in staden-io_lib-config.in
+ sed -i s/libread/libstaden-read/g io_lib/Makefile.in progs/Makefile.in
+ sed -i s/lread/lstaden-read/ staden-io_lib-config.in
+ sed -i s/io_lib-config/staden-io_lib-config/g configure Makefile.in
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.4Xn7nf
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd io_lib-1.12.4
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
--- ./configure.backup	2023-01-25 17:36:59.973657773 -0500
+++ ./configure	2023-01-25 17:37:01.493657758 -0500
@@ -1943,7 +1943,7 @@
 #ifdef __cplusplus
 extern "C"
 #endif
-char $2 ();
+__attribute__ ((used)) char $2 ();
 /* The GNU C library defines this for functions which it implements
     to always fail with ENOSYS.  Some functions are actually named
     something starting with __ and the normal name is an alias.  */
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
--- ./configure.backup	2023-01-25 17:37:01.493657758 -0500
+++ ./configure	2023-01-25 17:37:02.273657750 -0500
@@ -6307,7 +6307,7 @@
 sympat='\([_A-Za-z][_A-Za-z0-9]*\)'
 
 # Transform an extracted symbol line into a proper C declaration
-lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^. .* \(.*\)$/extern int \1;/p'"
+lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'"
 
 # Transform an extracted symbol line into symbol name and symbol address
 lt_cv_sys_global_symbol_to_c_name_address="sed -n -e 's/^: \([^ ]*\) $/  {\\\"\1\\\", (lt_ptr) 0},/p' -e 's/^$symcode \([^ ]*\) \([^ ]*\)$/  {\"\2\", (lt_ptr) \&\2},/p'"
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./config.sub
++ basename ./config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config.sub
'/usr/lib/rpm/redhat/config.sub' -> './config.sub'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./config.guess
++ basename ./config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config.guess
'/usr/lib/rpm/redhat/config.guess' -> './config.guess'
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']'
++ find . -name ltmain.sh
+ for i in $(find . -name ltmain.sh)
+ /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./ltmain.sh
+ ./configure --build=riscv64-koji-linux-gnu --host=riscv64-koji-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-static
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking for riscv64-koji-linux-gnu-gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of gcc... none
checking build system type... riscv64-koji-linux-gnu
checking host system type... riscv64-koji-linux-gnu
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for /usr/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking whether ln -s works... yes
checking how to recognise dependent libraries... pass_all
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking whether we are using the GNU C++ compiler... no
checking whether g++ accepts -g... no
checking dependency style of g++... none
checking for riscv64-koji-linux-gnu-g77... no
checking for riscv64-koji-linux-gnu-xlf... no
checking for riscv64-koji-linux-gnu-f77... no
checking for riscv64-koji-linux-gnu-frt... no
checking for riscv64-koji-linux-gnu-pgf77... no
checking for riscv64-koji-linux-gnu-cf77... no
checking for riscv64-koji-linux-gnu-fort77... no
checking for riscv64-koji-linux-gnu-fl32... no
checking for riscv64-koji-linux-gnu-af77... no
checking for riscv64-koji-linux-gnu-xlf90... no
checking for riscv64-koji-linux-gnu-f90... no
checking for riscv64-koji-linux-gnu-pgf90... no
checking for riscv64-koji-linux-gnu-pghpf... no
checking for riscv64-koji-linux-gnu-epcf90... no
checking for riscv64-koji-linux-gnu-gfortran... no
checking for riscv64-koji-linux-gnu-g95... no
checking for riscv64-koji-linux-gnu-xlf95... no
checking for riscv64-koji-linux-gnu-f95... no
checking for riscv64-koji-linux-gnu-fort... no
checking for riscv64-koji-linux-gnu-ifort... no
checking for riscv64-koji-linux-gnu-ifc... no
checking for riscv64-koji-linux-gnu-efc... no
checking for riscv64-koji-linux-gnu-pgf95... no
checking for riscv64-koji-linux-gnu-lf95... no
checking for riscv64-koji-linux-gnu-ftn... no
checking for g77... no
checking for xlf... no
checking for f77... no
checking for frt... no
checking for pgf77... no
checking for cf77... no
checking for fort77... no
checking for fl32... no
checking for af77... no
checking for xlf90... no
checking for f90... no
checking for pgf90... no
checking for pghpf... no
checking for epcf90... no
checking for gfortran... no
checking for g95... no
checking for xlf95... no
checking for f95... no
checking for fort... no
checking for ifort... no
checking for ifc... no
checking for efc... no
checking for pgf95... no
checking for lf95... no
checking for ftn... no
checking whether we are using the GNU Fortran 77 compiler... no
checking whether  accepts -g... no
checking the maximum length of command line arguments... 32768
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for objdir... .libs
checking for riscv64-koji-linux-gnu-ar... no
checking for ar... ar
checking for riscv64-koji-linux-gnu-ranlib... no
checking for ranlib... ranlib
checking for riscv64-koji-linux-gnu-strip... no
checking for strip... strip
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC
checking if gcc PIC flag -fPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... cat: 'ld.so.conf.d/*.conf': No such file or directory
GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
configure: creating libtool
appending configuration tag "CXX" to libtool
appending configuration tag "F77" to libtool
host=riscv64-koji-linux-gnu
Fixing libtool for -rpath problems.
checking for gawk... (cached) gawk
checking for curl-config... /usr/bin/curl-config
checking for the version of libcurl... 7.81.0
checking whether libcurl just needs -lcurl... yes
checking whether libcurl is usable... yes
checking for curl_free... yes
checking for inflateEnd in -lz... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for library containing gethostbyname... none required
checking for library containing socket... none required
checking whether byte ordering is bigendian... no
checking for ANSI C header files... (cached) yes
checking for sys/wait.h that is POSIX.1 compatible... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking for unistd.h... (cached) yes
checking for zlib.h... (cached) yes
checking whether byte ordering is bigendian... (cached) no
checking size of short... 2
checking size of int... 4
checking size of long... 8
checking for inline... inline
checking for mode_t... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for _LARGEFILE_SOURCE value needed for large files... no
checking for library containing cos... -lm
checking for strdup... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating io_lib/Makefile
config.status: creating progs/Makefile
config.status: creating tests/Makefile
config.status: creating staden-io_lib-config
config.status: creating io_lib/os.h
config.status: creating io_lib_config.h
config.status: executing depfiles commands
+ sed -i 's+\(search_path_spec=\"\)+\1/lib64 /usr/lib64 +' libtool
+ /usr/bin/make -O -j8 V=1 VERBOSE=1
/usr/bin/make  all-recursive
Making all in io_lib
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-fpoint.lo `test -f 'fpoint.c' || echo './'`fpoint.c
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c fpoint.c  -fPIC -DPIC -o .libs/libstaden_read_la-fpoint.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-scf_extras.lo `test -f 'scf_extras.c' || echo './'`scf_extras.c
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c scf_extras.c  -fPIC -DPIC -o .libs/libstaden_read_la-scf_extras.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-Read.lo `test -f 'Read.c' || echo './'`Read.c
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c Read.c  -fPIC -DPIC -o .libs/libstaden_read_la-Read.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-ztr.lo `test -f 'ztr.c' || echo './'`ztr.c
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ztr.c  -fPIC -DPIC -o .libs/libstaden_read_la-ztr.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
ztr.c: In function 'mfread_ztr':
ztr.c:335:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  335 |     while (chunk = ztr_read_chunk_hdr(fp)) {
      |            ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-translate.lo `test -f 'translate.c' || echo './'`translate.c
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c translate.c  -fPIC -DPIC -o .libs/libstaden_read_la-translate.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
translate.c: In function 'read2exp':
translate.c:292:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  292 |         if (p = strrchr(EN, '/'))
      |             ^
translate.c:302:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  302 |             if (cp = strrchr(read->trace_name, '/'))
      |                 ^~
translate.c: In function 'exp2read':
translate.c:650:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  650 |         if (fp = open_trace_file(exp_get_entry(e, EFLT_LN), fn)) {
      |             ^~
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-ztr_translate.lo `test -f 'ztr_translate.c' || echo './'`ztr_translate.c
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ztr_translate.c  -fPIC -DPIC -o .libs/libstaden_read_la-ztr_translate.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
ztr_translate.c:335:14: warning: 'ztr_encode_confidence_1' defined but not used [-Wunused-function]
  335 | static char *ztr_encode_confidence_1(ztr_t *z,
      |              ^~~~~~~~~~~~~~~~~~~~~~~
ztr_translate.c:182:14: warning: 'ztr_encode_samples_T' defined but not used [-Wunused-function]
  182 | static char *ztr_encode_samples_T(ztr_t *z,
      |              ^~~~~~~~~~~~~~~~~~~~
ztr_translate.c:175:14: warning: 'ztr_encode_samples_G' defined but not used [-Wunused-function]
  175 | static char *ztr_encode_samples_G(ztr_t *z,
      |              ^~~~~~~~~~~~~~~~~~~~
ztr_translate.c:168:14: warning: 'ztr_encode_samples_C' defined but not used [-Wunused-function]
  168 | static char *ztr_encode_samples_C(ztr_t *z,
      |              ^~~~~~~~~~~~~~~~~~~~
ztr_translate.c:161:14: warning: 'ztr_encode_samples_A' defined but not used [-Wunused-function]
  161 | static char *ztr_encode_samples_A(ztr_t *z,
      |              ^~~~~~~~~~~~~~~~~~~~
ztr_translate.c: In function 'ztr_encode_samples_4':
ztr_translate.c:29:20: warning: '%s' directive writing up to 255 bytes into a region of size 12 [-Wformat-overflow=]
   29 |         *mdbytes = sprintf(*mdata, "OFFS%c%s", 0, buf) + 1;
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:906,
                 from ztr_translate.c:5:
In function 'sprintf',
    inlined from 'ztr_encode_samples_4' at ztr_translate.c:29:13:
/usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 6 and 261 bytes into a destination of size 17
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-seqIOALF.lo `test -f 'seqIOALF.c' || echo './'`seqIOALF.c
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c seqIOALF.c  -fPIC -DPIC -o .libs/libstaden_read_la-seqIOALF.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-deflate_interlaced.lo `test -f 'deflate_interlaced.c' || echo './'`deflate_interlaced.c
mkdir .libs
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c deflate_interlaced.c  -fPIC -DPIC -o .libs/libstaden_read_la-deflate_interlaced.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-seqIOCTF.lo `test -f 'seqIOCTF.c' || echo './'`seqIOCTF.c
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c seqIOCTF.c  -fPIC -DPIC -o .libs/libstaden_read_la-seqIOCTF.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
deflate_interlaced.c: In function 'calc_bit_lengths':
deflate_interlaced.c:516:9: warning: variable 'map' set but not used [-Wunused-but-set-variable]
  516 |     int map[258];
      |         ^~~
deflate_interlaced.c: In function 'huffman_multi_decode':
deflate_interlaced.c:1760:9: warning: variable 'nc' set but not used [-Wunused-but-set-variable]
 1760 |     int nc;
      |         ^~
deflate_interlaced.c:1759:23: warning: variable 'c' set but not used [-Wunused-but-set-variable]
 1759 |     huffman_codes_t **c;
      |                       ^
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-seqIOABI.lo `test -f 'seqIOABI.c' || echo './'`seqIOABI.c
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c seqIOABI.c  -fPIC -DPIC -o .libs/libstaden_read_la-seqIOABI.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
seqIOABI.c: In function 'getABIString':
seqIOABI.c:259:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  259 |     if (off = getABIIndexEntryLW(fp, indexO, label, count, 4, &len)) {
      |         ^~~
seqIOABI.c: In function 'mfread_abi':
seqIOABI.c:657:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  657 |                 if (p = strchr(commstrp, '\n'))
      |                     ^
seqIOABI.c:662:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  662 |             } while(commstrp = p);
      |                     ^~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-seqIOPlain.lo `test -f 'seqIOPlain.c' || echo './'`seqIOPlain.c
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c seqIOPlain.c  -fPIC -DPIC -o .libs/libstaden_read_la-seqIOPlain.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
seqIOPlain.c: In function 'mfread_pln':
seqIOPlain.c:150:25: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  150 |                     if (p = strchr(type, ' '))
      |                         ^
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-misc_scf.lo `test -f 'misc_scf.c' || echo './'`misc_scf.c
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c misc_scf.c  -fPIC -DPIC -o .libs/libstaden_read_la-misc_scf.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
In file included from misc_scf.c:33:
misc_scf.c: In function 'is_scf':
../io_lib/scf.h:45:50: warning: suggest parentheses around '+' inside '<<' [-Wparentheses]
   45 | #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f')
      |                                                  ^~
misc_scf.c:151:26: note: in expansion of macro 'SCF_MAGIC'
  151 |             ok = (magic==SCF_MAGIC);
      |                          ^~~~~~~~~
../io_lib/scf.h:45:66: warning: suggest parentheses around '+' inside '<<' [-Wparentheses]
   45 | #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f')
      |                                                                  ^~
misc_scf.c:151:26: note: in expansion of macro 'SCF_MAGIC'
  151 |             ok = (magic==SCF_MAGIC);
      |                          ^~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-compression.lo `test -f 'compression.c' || echo './'`compression.c
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c compression.c  -fPIC -DPIC -o .libs/libstaden_read_la-compression.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-expFileIO.lo `test -f 'expFileIO.c' || echo './'`expFileIO.c
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c expFileIO.c  -fPIC -DPIC -o .libs/libstaden_read_la-expFileIO.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
expFileIO.c: In function 'exp_print_mline':
expFileIO.c:198:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  198 |     if (c = strchr(p, '\n'))
      |         ^
expFileIO.c:207:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  207 |         if (c = strchr(p, '\n')) {
      |             ^
expFileIO.c: In function 'opos2str':
expFileIO.c:393:12: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else]
  393 |         if (dir == 0)
      |            ^
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-read_scf.lo `test -f 'read_scf.c' || echo './'`read_scf.c
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c read_scf.c  -fPIC -DPIC -o .libs/libstaden_read_la-read_scf.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
In file included from ../io_lib/Read.h:44,
                 from read_scf.c:46:
read_scf.c: In function 'read_scf_header':
../io_lib/scf.h:45:50: warning: suggest parentheses around '+' inside '<<' [-Wparentheses]
   45 | #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f')
      |                                                  ^~
read_scf.c:67:28: note: in expansion of macro 'SCF_MAGIC'
   67 |     if (h->magic_number != SCF_MAGIC)                     return -1;
      |                            ^~~~~~~~~
../io_lib/scf.h:45:66: warning: suggest parentheses around '+' inside '<<' [-Wparentheses]
   45 | #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f')
      |                                                                  ^~
read_scf.c:67:28: note: in expansion of macro 'SCF_MAGIC'
   67 |     if (h->magic_number != SCF_MAGIC)                     return -1;
      |                            ^~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-write_scf.lo `test -f 'write_scf.c' || echo './'`write_scf.c
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c write_scf.c  -fPIC -DPIC -o .libs/libstaden_read_la-write_scf.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
In file included from write_scf.c:60:
write_scf.c: In function 'mfwrite_scf':
../io_lib/scf.h:45:50: warning: suggest parentheses around '+' inside '<<' [-Wparentheses]
   45 | #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f')
      |                                                  ^~
write_scf.c:389:32: note: in expansion of macro 'SCF_MAGIC'
  389 |     scf->header.magic_number = SCF_MAGIC;
      |                                ^~~~~~~~~
../io_lib/scf.h:45:66: warning: suggest parentheses around '+' inside '<<' [-Wparentheses]
   45 | #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f')
      |                                                                  ^~
write_scf.c:389:32: note: in expansion of macro 'SCF_MAGIC'
  389 |     scf->header.magic_number = SCF_MAGIC;
      |                                ^~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
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make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-ctfCompress.lo `test -f 'ctfCompress.c' || echo './'`ctfCompress.c
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ctfCompress.c  -fPIC -DPIC -o .libs/libstaden_read_la-ctfCompress.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
ctfCompress.c: In function 'ctfCompress2':
ctfCompress.c:270:80: warning: format '%d' expects argument of type 'int', but argument 7 has type 'size_t' {aka 'long unsigned int'} [-Wformat=]
  270 |   printf ("compress2 : %d zeros in %d bytes, %d < 7 , %d byte, %d short total %d char for %d shrt\n",
      |                                                                               ~^
      |                                                                                |
      |                                                                                int
      |                                                                               %ld
ctfCompress.c:270:92: warning: format '%d' expects argument of type 'int', but argument 8 has type 'size_t' {aka 'long unsigned int'} [-Wformat=]
  270 |   printf ("compress2 : %d zeros in %d bytes, %d < 7 , %d byte, %d short total %d char for %d shrt\n",
      |                                                                                           ~^
      |                                                                                            |
      |                                                                                            int
      |                                                                                           %ld
ctfCompress.c: In function 'ctfCompress3':
ctfCompress.c:607:116: warning: format '%d' expects argument of type 'int', but argument 8 has type 'size_t' {aka 'long unsigned int'} [-Wformat=]
  607 |     printf (" // compress3:\n//  %d zeros in %d bytes, %d values coded in %d byte, %d bytes, %d short. \n// Total %d char for %d shrt\n",
      |                                                                                                                   ~^
      |                                                                                                                    |
      |                                                                                                                    int
      |                                                                                                                   %ld
ctfCompress.c:607:128: warning: format '%d' expects argument of type 'int', but argument 9 has type 'size_t' {aka 'long unsigned int'} [-Wformat=]
  607 |     printf (" // compress3:\n//  %d zeros in %d bytes, %d values coded in %d byte, %d bytes, %d short. \n// Total %d char for %d shrt\n",
      |                                                                                                                               ~^
      |                                                                                                                                |
      |                                                                                                                                int
      |                                                                                                                               %ld
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/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-find.lo `test -f 'find.c' || echo './'`find.c
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 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c files.c  -fPIC -DPIC -o .libs/libstaden_read_la-files.o
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/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-mach-io.lo `test -f 'mach-io.c' || echo './'`mach-io.c
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c mach-io.c  -fPIC -DPIC -o .libs/libstaden_read_la-mach-io.o
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/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-read_alloc.lo `test -f 'read_alloc.c' || echo './'`read_alloc.c
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/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-srf.lo `test -f 'srf.c' || echo './'`srf.c
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c srf.c  -fPIC -DPIC -o .libs/libstaden_read_la-srf.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
srf.c: In function 'srf_write_cont_hdr':
srf.c:300:24: warning: the comparison will always evaluate as 'true' for the address of 'version' will never be NULL [-Waddress]
  300 |         + (ch->version ? strlen(ch->version) : 0) + 1
      |                        ^
In file included from srf.c:13:
../io_lib/srf.h:25:10: note: 'version' declared here
   25 |     char version[256];
      |          ^~~~~~~
srf.c:301:28: warning: the comparison will always evaluate as 'true' for the address of 'base_caller' will never be NULL [-Waddress]
  301 |         + (ch->base_caller ? strlen(ch->base_caller) : 0) + 1
      |                            ^
../io_lib/srf.h:27:10: note: 'base_caller' declared here
   27 |     char base_caller[256];
      |          ^~~~~~~~~~~
srf.c:302:36: warning: the comparison will always evaluate as 'true' for the address of 'base_caller_version' will never be NULL [-Waddress]
  302 |         + (ch->base_caller_version ? strlen(ch->base_caller_version) : 0) + 1;
      |                                    ^
../io_lib/srf.h:28:10: note: 'base_caller_version' declared here
   28 |     char base_caller_version[256];
      |          ^~~~~~~~~~~~~~~~~~~
srf.c: In function 'srf_write_trace_hdr':
srf.c:466:26: warning: the comparison will always evaluate as 'true' for the address of 'id_prefix' will never be NULL [-Waddress]
  466 |         + (th->id_prefix ? strlen(th->id_prefix) : 0) + 1
      |                          ^
../io_lib/srf.h:35:10: note: 'id_prefix' declared here
   35 |     char id_prefix[256];
      |          ^~~~~~~~~
srf.c: In function 'srf_index_write':
srf.c:976:27: warning: the comparison will always evaluate as 'true' for the address of 'ch_file' will never be NULL [-Waddress]
  976 |         1 + (idx->ch_file ? strlen(idx->ch_file) : 0) +
      |                           ^
../io_lib/srf.h:85:10: note: 'ch_file' declared here
   85 |     char ch_file[PATH_MAX+1];
      |          ^~~~~~~
srf.c:977:27: warning: the comparison will always evaluate as 'true' for the address of 'th_file' will never be NULL [-Waddress]
  977 |         1 + (idx->th_file ? strlen(idx->th_file) : 0);
      |                           ^
../io_lib/srf.h:86:10: note: 'th_file' declared here
   86 |     char th_file[PATH_MAX+1];
      |          ^~~~~~~
srf.c:1002:9: warning: the comparison will always evaluate as 'true' for the address of 'th_file' will never be NULL [-Waddress]
 1002 |     if (idx->th_file)
      |         ^~~
../io_lib/srf.h:86:10: note: 'th_file' declared here
   86 |     char th_file[PATH_MAX+1];
      |          ^~~~~~~
srf.c:1006:9: warning: the comparison will always evaluate as 'true' for the address of 'ch_file' will never be NULL [-Waddress]
 1006 |     if (idx->ch_file)
      |         ^~~
../io_lib/srf.h:85:10: note: 'ch_file' declared here
   85 |     char ch_file[PATH_MAX+1];
      |          ^~~~~~~
srf.c: In function 'get_hi_bits':
srf.c:1106:59: warning: suggest parentheses around '-' in operand of '&' [-Wparentheses]
 1106 |     val = (block->data[block->byte]) & (1<<(8-block->bit))-1;
      |                                        ~~~~~~~~~~~~~~~~~~~^~
srf.c:1126:28: warning: suggest parentheses around '-' in operand of '&' [-Wparentheses]
 1126 |         & (1<<(nbits-bnum))-1;
      |           ~~~~~~~~~~~~~~~~~^~
srf.c: In function 'pack_trace_suffix':
srf.c:1383:17: warning: variable 'width' set but not used [-Wunused-but-set-variable]
 1383 |             int width = 0;
      |                 ^~~~~
srf.c: In function 'partial_decode_ztr':
srf.c:1604:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 1604 |     while (chunk = ztr_read_chunk_hdr(mf)) {
      |            ^~~~~
srf.c: In function 'srf_find_trace':
srf.c:2025:13: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2025 |             fread(dpos, 1, item_sz, srf->fp);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c xalloc.c  -fPIC -DPIC -o .libs/libstaden_read_la-xalloc.o
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make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-strings.lo `test -f 'strings.c' || echo './'`strings.c
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c strings.c  -fPIC -DPIC -o .libs/libstaden_read_la-strings.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
strings.c: In function 'c2fstr':
strings.c:49:5: warning: 'strncpy' specified bound depends on the length of the source argument [-Wstringop-truncation]
   49 |     strncpy(f,c,i);
      |     ^
In file included from strings.c:19:
strings.c:48:18: note: length computed here
   48 |     i = min((int)strlen(c),max_f);
      |                  ^~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-vlen.lo `test -f 'vlen.c' || echo './'`vlen.c
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c vlen.c  -fPIC -DPIC -o .libs/libstaden_read_la-vlen.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
vlen.c: In function 'vflen':
vlen.c:86:19: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   86 |             for(; c=*++cp;) {
      |                   ^
vlen.c:57:9: warning: variable 'i' set but not used [-Wunused-but-set-variable]
   57 |     int i;
      |         ^
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-traceType.lo `test -f 'traceType.c' || echo './'`traceType.c
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c traceType.c  -fPIC -DPIC -o .libs/libstaden_read_la-traceType.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-open_trace_file.lo `test -f 'open_trace_file.c' || echo './'`open_trace_file.c
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c open_trace_file.c  -fPIC -DPIC -o .libs/libstaden_read_la-open_trace_file.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
open_trace_file.c: In function 'find_file_tar':
open_trace_file.c:143:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  143 |                 if (cp = strchr(path, '\n'))
      |                     ^~
open_trace_file.c: In function 'sff_hash_query':
open_trace_file.c:537:21: warning: assignment to 'FILE **' from incompatible pointer type 'FILE *' [-Wincompatible-pointer-types]
  537 |             hf->afp = hf->hfp = NULL; /* will be closed by our parent */
      |                     ^
open_trace_file.c:530:18: warning: variable 'fp_copy' set but not used [-Wunused-but-set-variable]
  530 |     static FILE *fp_copy = NULL;
      |                  ^~~~~~~
open_trace_file.c: In function 'find_file_sff':
open_trace_file.c:748:14: warning: variable 'nkey' set but not used [-Wunused-but-set-variable]
  748 |     uint32_t nkey, nflows, chdrlen, rhdrlen, dlen, magic;
      |              ^~~~
open_trace_file.c: In function 'find_file_dir':
open_trace_file.c:914:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  914 |     if (cp = strrchr(file, '/')) {
      |         ^~
open_trace_file.c: In function 'open_path_mfile':
open_trace_file.c:1087:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 1087 |         if (cp = strrchr(relative_path, '/'))
      |             ^~
open_trace_file.c:1089:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 1089 |         if (fp = find_file_dir(file, relative_path))
      |             ^~
open_trace_file.c: In function 'find_file_sff':
open_trace_file.c:798:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  798 |         fread(index_format, 1, 8, fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
open_trace_file.c: In function 'find_file_dir':
open_trace_file.c:929:13: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  929 |             fread(magic, 1, 4, fp);
      |             ^~~~~~~~~~~~~~~~~~~~~~
open_trace_file.c:940:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  940 |                 fread(magic, 1, 8, fp);
      |                 ^~~~~~~~~~~~~~~~~~~~~~
open_trace_file.c:950:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  950 |                 fread(magic, 1, 5, fp);
      |                 ^~~~~~~~~~~~~~~~~~~~~~
open_trace_file.c: In function 'sff_sorted_query':
open_trace_file.c:704:5: warning: 'offset' may be used uninitialized [-Wmaybe-uninitialized]
  704 |     fseek(fp, offset, SEEK_SET);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
open_trace_file.c:595:14: note: 'offset' was declared here
  595 |     uint32_t offset;
      |              ^~~~~~
In file included from /usr/include/curl/curl.h:3090,
                 from open_trace_file.c:33:
In function 'find_file_url',
    inlined from 'open_path_mfile' at open_trace_file.c:1054:22:
open_trace_file.c:458:14: warning: call to '_curl_easy_setopt_err_write_callback' declared with attribute warning: curl_easy_setopt expects a curl_write_callback argument for this option [-Wattribute-warning]
  458 |     if (0 != curl_easy_setopt(handle, CURLOPT_WRITEFUNCTION, mfwrite))
      |              ^~~~~~~~~~~~~~~~
open_trace_file.c:462:14: warning: call to '_curl_easy_setopt_err_write_callback' declared with attribute warning: curl_easy_setopt expects a curl_write_callback argument for this option [-Wattribute-warning]
  462 |     if (0 != curl_easy_setopt(handle, CURLOPT_HEADERFUNCTION, mfwrite))
      |              ^~~~~~~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-jenkins_lookup3.lo `test -f 'jenkins_lookup3.c' || echo './'`jenkins_lookup3.c
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c jenkins_lookup3.c  -fPIC -DPIC -o .libs/libstaden_read_la-jenkins_lookup3.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
jenkins_lookup3.c:654:17: warning: 'hashbig' defined but not used [-Wunused-function]
  654 | static uint32_t hashbig( const void *key, size_t length, uint32_t initval)
      |                 ^~~~~~~
jenkins_lookup3.c:288:17: warning: 'hashlittle' defined but not used [-Wunused-function]
  288 | static uint32_t hashlittle( const void *key, size_t length, uint32_t initval)
      |                 ^~~~~~~~~~
jenkins_lookup3.c:223:13: warning: 'hashword2' defined but not used [-Wunused-function]
  223 | static void hashword2 (
      |             ^~~~~~~~~
jenkins_lookup3.c:179:17: warning: 'hashword' defined but not used [-Wunused-function]
  179 | static uint32_t hashword(
      |                 ^~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-pooled_alloc.lo `test -f 'pooled_alloc.c' || echo './'`pooled_alloc.c
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pooled_alloc.c  -fPIC -DPIC -o .libs/libstaden_read_la-pooled_alloc.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
pooled_alloc.c: In function 'new_pool':
pooled_alloc.c:37:11: warning: unused variable 'cp' [-Wunused-variable]
   37 |     char *cp;
      |           ^~
pooled_alloc.c:35:12: warning: unused variable 'i' [-Wunused-variable]
   35 |     size_t i, n = PSIZE / p->dsize;
      |            ^
pooled_alloc.c: In function 'pool_alloc':
pooled_alloc.c:65:12: warning: unused variable 'i' [-Wunused-variable]
   65 |     size_t i;
      |            ^
pooled_alloc.c: In function 'pool_free':
pooled_alloc.c:95:19: warning: unused variable 'i' [-Wunused-variable]
   95 |     size_t psize, i;
      |                   ^
pooled_alloc.c:95:12: warning: unused variable 'psize' [-Wunused-variable]
   95 |     size_t psize, i;
      |            ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-mFILE.lo `test -f 'mFILE.c' || echo './'`mFILE.c
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c mFILE.c  -fPIC -DPIC -o .libs/libstaden_read_la-mFILE.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
mFILE.c: In function 'mfreopen':
mFILE.c:194:16: warning: variable 'w' set but not used [-Wunused-but-set-variable]
  194 |     int r = 0, w = 0, a = 0, b = 0, x = 0, mode = 0;
      |                ^
mFILE.c: In function 'mfflush':
mFILE.c:487:17: warning: suggest parentheses around operand of '!' or change '&' to '&&' or '!' to '~' [-Wparentheses]
  487 |             if (!mf->mode & MF_MODEX)
      |                 ^~~~~~~~~
mFILE.c:493:9: warning: ignoring return value of 'ftruncate' declared with attribute 'warn_unused_result' [-Wunused-result]
  493 |         ftruncate(fileno(mf->fp), ftell(mf->fp));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-hash_table.lo `test -f 'hash_table.c' || echo './'`hash_table.c
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c hash_table.c  -fPIC -DPIC -o .libs/libstaden_read_la-hash_table.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
hash_table.c: In function 'HashFileFopen':
hash_table.c:1140:13: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1140 |             fread(hf->archives[i], 1, fnamelen, fp);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hash_table.c:1156:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1156 |         fread(&hf->headers[i].pos,  8, 1, hf->hfp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hash_table.c:1157:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1157 |         fread(&hf->headers[i].size, 4, 1, hf->hfp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hash_table.c:1169:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1169 |         fread(&hf->footers[i].pos,  8, 1, hf->hfp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hash_table.c:1170:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1170 |         fread(&hf->footers[i].size, 4, 1, hf->hfp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hash_table.c: In function 'HashFileQuery':
hash_table.c:1368:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1368 |         fread(k, klen, 1, hf->hfp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~
hash_table.c:1369:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1369 |         fread(&headfoot, 1, 1, hf->hfp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hash_table.c:1372:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1372 |         fread(&pos, 8, 1, hf->hfp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~
hash_table.c:1376:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1376 |         fread(&size, 4, 1, hf->hfp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~
hash_table.c: In function 'HashFileExtract':
hash_table.c:1506:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1506 |         fread(&data[pos], head->size, 1, hf->afp[head->archive_no]);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hash_table.c:1516:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1516 |     fread(&data[pos], hfi.size, 1, hf->afp[hfi.archive]);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hash_table.c:1526:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1526 |         fread(&data[pos], foot->size, 1, hf->afp[foot->archive_no]);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o libstaden-read.la -rpath /usr/lib64 -version-info 2:2:1  libstaden_read_la-Read.lo libstaden_read_la-scf_extras.lo libstaden_read_la-translate.lo libstaden_read_la-compression.lo libstaden_read_la-ztr.lo libstaden_read_la-ztr_translate.lo libstaden_read_la-deflate_interlaced.lo libstaden_read_la-fpoint.lo libstaden_read_la-seqIOABI.lo libstaden_read_la-seqIOALF.lo libstaden_read_la-ctfCompress.lo libstaden_read_la-seqIOCTF.lo libstaden_read_la-expFileIO.lo libstaden_read_la-seqIOPlain.lo libstaden_read_la-misc_scf.lo libstaden_read_la-read_scf.lo libstaden_read_la-write_scf.lo libstaden_read_la-sff.lo libstaden_read_la-srf.lo libstaden_read_la-array.lo libstaden_read_la-compress.lo libstaden_read_la-error.lo libstaden_read_la-files.lo libstaden_read_la-find.lo libstaden_read_la-mach-io.lo libstaden_read_la-open_trace_file.lo libstaden_read_la-read_alloc.lo libstaden_read_la-strings.lo libstaden_read_la-traceType.lo libstaden_read_la-xalloc.lo libstaden_read_la-vlen.lo libstaden_read_la-hash_table.lo libstaden_read_la-jenkins_lookup3.lo libstaden_read_la-mFILE.lo libstaden_read_la-pooled_alloc.lo -lz  -lcurl -lm 
gcc -shared  .libs/libstaden_read_la-Read.o .libs/libstaden_read_la-scf_extras.o .libs/libstaden_read_la-translate.o .libs/libstaden_read_la-compression.o .libs/libstaden_read_la-ztr.o .libs/libstaden_read_la-ztr_translate.o .libs/libstaden_read_la-deflate_interlaced.o .libs/libstaden_read_la-fpoint.o .libs/libstaden_read_la-seqIOABI.o .libs/libstaden_read_la-seqIOALF.o .libs/libstaden_read_la-ctfCompress.o .libs/libstaden_read_la-seqIOCTF.o .libs/libstaden_read_la-expFileIO.o .libs/libstaden_read_la-seqIOPlain.o .libs/libstaden_read_la-misc_scf.o .libs/libstaden_read_la-read_scf.o .libs/libstaden_read_la-write_scf.o .libs/libstaden_read_la-sff.o .libs/libstaden_read_la-srf.o .libs/libstaden_read_la-array.o .libs/libstaden_read_la-compress.o .libs/libstaden_read_la-error.o .libs/libstaden_read_la-files.o .libs/libstaden_read_la-find.o .libs/libstaden_read_la-mach-io.o .libs/libstaden_read_la-open_trace_file.o .libs/libstaden_read_la-read_alloc.o .libs/libstaden_read_la-strings.o .libs/libstaden_read_la-traceType.o .libs/libstaden_read_la-xalloc.o .libs/libstaden_read_la-vlen.o .libs/libstaden_read_la-hash_table.o .libs/libstaden_read_la-jenkins_lookup3.o .libs/libstaden_read_la-mFILE.o .libs/libstaden_read_la-pooled_alloc.o  -lz -lcurl -lm -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -Wl,--build-id=sha1 -Wl,-soname -Wl,libstaden-read.so.1 -o .libs/libstaden-read.so.1.1.2
(cd .libs && rm -f libstaden-read.so.1 && ln -s libstaden-read.so.1.1.2 libstaden-read.so.1)
(cd .libs && rm -f libstaden-read.so && ln -s libstaden-read.so.1.1.2 libstaden-read.so)
creating libstaden-read.la
(cd .libs && rm -f libstaden-read.la && ln -s ../libstaden-read.la libstaden-read.la)
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
Making all in progs
In function 'find_file_url',
    inlined from 'open_path_mfile' at open_trace_file.c:1054:22:
open_trace_file.c:458:14: warning: call to '_curl_easy_setopt_err_write_callback' declared with attribute warning: curl_easy_setopt expects a curl_write_callback argument for this option [-Wattribute-warning]
  458 |     if (0 != curl_easy_setopt(handle, CURLOPT_WRITEFUNCTION, mfwrite))
      |              ^
open_trace_file.c:462:14: warning: call to '_curl_easy_setopt_err_write_callback' declared with attribute warning: curl_easy_setopt expects a curl_write_callback argument for this option [-Wattribute-warning]
  462 |     if (0 != curl_easy_setopt(handle, CURLOPT_HEADERFUNCTION, mfwrite))
      |              ^
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c scf_info.c
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c index_tar.c
index_tar.c: In function 'main':
index_tar.c:72:21: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   72 |                     fread(member, 1, size > 256 ? 256 : size, fp);
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
index_tar.c:82:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   82 |                 fread(member, 1, size > 256 ? 256 : size, fp);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c scf_dump.c
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c extract_fastq.c
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
extract_fastq.c: In function 'main':
extract_fastq.c:141:25: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  141 |                     if (cp = strchr(line, '\n'))
      |                         ^~
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c extract_seq.c
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
extract_seq.c: In function 'main':
extract_seq.c:199:25: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  199 |                     if (cp = strchr(line, '\n'))
      |                         ^~
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c scf_update.c
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c extract_qual.c
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
extract_qual.c: In function 'main':
extract_qual.c:317:25: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  317 |                     if (cp = strchr(line, '\n'))
      |                         ^~
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c get_comment.c
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c hash_extract.c
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
hash_extract.c: In function 'extract':
hash_extract.c:20:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   20 |     if (data = HashFileExtract(hf, file, &len)) {
      |         ^~~~
hash_extract.c: In function 'main':
hash_extract.c:74:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   74 |             if (c = strchr(file, '\n'))
      |                 ^
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c hash_list.c
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c trace_dump.c
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c makeSCF.c
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c append_sff.c
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
append_sff.c: In function 'main':
append_sff.c:116:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  116 |     fread(chdr, 1, 31, fpout);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c hash_tar.c
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
hash_tar.c: In function 'load_map':
hash_tar.c:78:5: warning: implicit declaration of function 'close'; did you mean 'pclose'? [-Wimplicit-function-declaration]
   78 |     close(fp);
      |     ^~~~~
      |     pclose
hash_tar.c: In function 'main':
hash_tar.c:273:11: warning: unused variable 'fp' [-Wunused-variable]
  273 |     FILE *fp;
      |           ^~
hash_tar.c: In function 'accumulate':
hash_tar.c:136:21: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  136 |                     fread(member, 1, size > 256 ? 256 : size, fp);
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hash_tar.c:146:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  146 |                 fread(member, 1, size > 256 ? 256 : size, fp);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hash_tar.c:204:1: warning: control reaches end of non-void function [-Wreturn-type]
  204 | }
      | ^
hash_tar.c: In function 'main':
hash_tar.c:327:27: warning: 'hf' may be used uninitialized [-Wmaybe-uninitialized]
  327 |                 realloc(hf->headers, (hf->nheaders+1) *
      |                         ~~^~~~~~~~~
hash_tar.c:274:15: note: 'hf' was declared here
  274 |     HashFile *hf;
      |               ^~
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c convert_trace.c
convert_trace.c:16:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=]
   16 | static char const rcsid[] = "$Id: convert_trace.c,v 1.12 2008-02-20 16:07:44 jkbonfield Exp $";
      |                   ^~~~~
convert_trace.c: In function 'main':
convert_trace.c:743:37: warning: '%s' directive writing up to 8191 bytes into a region of size 2042 [-Wformat-overflow=]
  724 |             infname = line2;
      |                       ~~~~~          
......
  743 |                 sprintf(buf, "ERROR %s", infname);
      |                                     ^~
In file included from /usr/include/stdio.h:906,
                 from convert_trace.c:5:
In function 'sprintf',
    inlined from 'main' at convert_trace.c:743:3:
/usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 7 and 8198 bytes into a destination of size 2048
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c srf_index_hash.c
srf_index_hash.c: In function 'main':
srf_index_hash.c:138:5: warning: ignoring return value of 'ftruncate' declared with attribute 'warn_unused_result' [-Wunused-result]
  138 |     ftruncate(fileno(srf->fp), ftello(srf->fp));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c srf_extract_linear.c
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c hash_sff.c
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
hash_sff.c: In function 'main':
hash_sff.c:207:20: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  207 |             while (len = fread(block, 1, 8192, fp)) {
      |                    ^~~
hash_sff.c:230:13: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  230 |             fread(hdr, 1, 31, fp);
      |             ^~~~~~~~~~~~~~~~~~~~~
hash_sff.c:258:13: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  258 |             fread(hdr, 1, 31, fpout);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c ztr_dump.c
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c srf2fasta.c
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c srf_extract_hash.c
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c srf_list.c
srf_list.c: In function 'count_file':
srf_list.c:75:19: warning: unused variable 'data' [-Wunused-variable]
   75 |     unsigned char data[16];
      |                   ^~~~
srf_list.c:74:22: warning: unused variable 'i' [-Wunused-variable]
   74 |     int item_sz = 9, i;
      |                      ^
srf_list.c:73:11: warning: variable 'ipos' set but not used [-Wunused-but-set-variable]
   73 |     off_t ipos, skip;
      |           ^~~~
srf_list.c:72:13: warning: unused variable 'count' [-Wunused-variable]
   72 |     int64_t count = 0;
      |             ^~~~~
srf_list.c: In function 'main':
srf_list.c:158:26: warning: format '%d' expects argument of type 'int', but argument 3 has type 'int64_t' {aka 'long int'} [-Wformat=]
  158 |             printf("%s: %d sequences\n", argv[i], c);
      |                         ~^                        ~
      |                          |                        |
      |                          int                      int64_t {aka long int}
      |                         %ld
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c srf2fastq.c
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
srf2fastq.c: In function 'ztr2fastq':
srf2fastq.c:369:17: warning: variable 'start' set but not used [-Wunused-but-set-variable]
  369 |             int start, length;
      |                 ^~~~~
srf2fastq.c:480:21: warning: variable 'start' set but not used [-Wunused-but-set-variable]
  480 |                 int start, length;
      |                     ^~~~~
srf2fastq.c:366:26: warning: 'regn' may be used uninitialized [-Wmaybe-uninitialized]
  366 |              iregion<regn->nregions && iregion<MAX_REGIONS;
      |                      ~~~~^~~~~~~~~~
srf2fastq.c:248:13: note: 'regn' was declared here
  248 |     regn_t *regn;
      |             ^~~~
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c srf_info.c
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
srf_info.c: In function 'partial_decode_ztr2':
srf_info.c:411:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  411 |     while (chunk = ztr_read_chunk_hdr(mf)) {
      |            ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c srf_dump_all.c
srf_dump_all.c: In function 'dump_solexa':
srf_dump_all.c:309:57: warning: pointer targets in passing argument 3 of 'dump_conf4_solexa' differ in signedness [-Wpointer-sign]
  309 |         dump_conf4_solexa(files[1], seq, chunks[0]->data+1, chunks[0]->dlength-1);
      |                                          ~~~~~~~~~~~~~~~^~
      |                                                         |
      |                                                         char *
srf_dump_all.c:227:58: note: expected 'signed char *' but argument is of type 'char *'
  227 | void dump_conf4_solexa(FILE *fp, char *seq, signed char *bytes, int nbytes) {
      |                                             ~~~~~~~~~~~~~^~~~~
srf_dump_all.c:320:53: warning: pointer targets in passing argument 7 of 'dump_samples4_solexa' differ in signedness [-Wpointer-sign]
  320 |                                      chunks[i]->data+2, chunks[i]->dlength-2);
      |                                      ~~~~~~~~~~~~~~~^~
      |                                                     |
      |                                                     char *
srf_dump_all.c:195:56: note: expected 'unsigned char *' but argument is of type 'char *'
  195 |                           int baseline, unsigned char *bytes, int nbytes) {
      |                                         ~~~~~~~~~~~~~~~^~~~~
srf_dump_all.c:333:53: warning: pointer targets in passing argument 7 of 'dump_samples4_solexa' differ in signedness [-Wpointer-sign]
  333 |                                      chunks[i]->data+2, chunks[i]->dlength-2);
      |                                      ~~~~~~~~~~~~~~~^~
      |                                                     |
      |                                                     char *
srf_dump_all.c:195:56: note: expected 'unsigned char *' but argument is of type 'char *'
  195 |                           int baseline, unsigned char *bytes, int nbytes) {
      |                                         ~~~~~~~~~~~~~~~^~~~~
srf_dump_all.c:346:53: warning: pointer targets in passing argument 7 of 'dump_samples4_solexa' differ in signedness [-Wpointer-sign]
  346 |                                      chunks[i]->data+2, chunks[i]->dlength-2);
      |                                      ~~~~~~~~~~~~~~~^~
      |                                                     |
      |                                                     char *
srf_dump_all.c:195:56: note: expected 'unsigned char *' but argument is of type 'char *'
  195 |                           int baseline, unsigned char *bytes, int nbytes) {
      |                                         ~~~~~~~~~~~~~~~^~~~~
srf_dump_all.c: In function 'read_filter_from_file':
srf_dump_all.c:484:11: warning: variable 'lStartPos' set but not used [-Wunused-but-set-variable]
  484 |     long  lStartPos;              /* Offset of start of current line */
      |           ^~~~~~~~~
srf_dump_all.c:483:11: warning: variable 'lLineLen' set but not used [-Wunused-but-set-variable]
  483 |     long  lLineLen;               /* Current line length */
      |           ^~~~~~~~
srf_dump_all.c:506:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  506 |     fread(cFile, lFileLen, 1, input); /* Read the entire file into cFile */
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
srf_dump_all.c:566:49: warning: '%s' directive argument is null [-Wformat-overflow=]
  566 |                     fprintf(stderr, "Bad read \"%s\" in read filter \"%s\".\n", read, cThisLine);
      |                                                 ^~
srf_dump_all.c:555:51: warning: '%s' directive argument is null [-Wformat-overflow=]
  555 |                     fprintf(stderr, "Bad prefix \"%s\" in read filter \"%s\".\n", prefix, cThisLine);
      |                                                   ^~
srf_dump_all.c: In function 'get_read_filter':
srf_dump_all.c:651:41: warning: '%s' directive argument is null [-Wformat-overflow=]
  651 |             fprintf(stderr, "Bad read \"%s\" in read filter \"%s\".\n", read, filter_value);
      |                                         ^~
srf_dump_all.c:640:43: warning: '%s' directive argument is null [-Wformat-overflow=]
  640 |             fprintf(stderr, "Bad prefix \"%s\" in read filter \"%s\".\n", prefix, filter_value);
      |                                           ^~
srf_dump_all.c:622:46: warning: '%s' directive argument is null [-Wformat-overflow=]
  622 |             fprintf(stderr, "Bad file name \"%s\" in read filter \"%s\".\n", file_name, filter_value);
      |                                              ^~
srf_dump_all.c: In function 'process_srf_to_text_files':
srf_dump_all.c:940:20: warning: '/s_' directive writing 3 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
  940 |     sprintf(fn, "%s/s_%d_%04d_dump.txt", dir, lane, tile);
      |                    ^~~
In file included from /usr/include/stdio.h:906,
                 from srf_dump_all.c:37:
In function 'sprintf',
    inlined from 'fopen_text' at srf_dump_all.c:940:5,
    inlined from 'process_srf_to_text_files' at srf_dump_all.c:988:14:
/usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 19 and 1059 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -c srf_filter.c
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
srf_filter.c: In function 'read_filter_from_file':
srf_filter.c:164:11: warning: variable 'lStartPos' set but not used [-Wunused-but-set-variable]
  164 |     long  lStartPos;              /* Offset of start of current line */
      |           ^~~~~~~~~
srf_filter.c:163:11: warning: variable 'lLineLen' set but not used [-Wunused-but-set-variable]
  163 |     long  lLineLen;               /* Current line length */
      |           ^~~~~~~~
srf_filter.c: In function 'dump_read_filter':
srf_filter.c:457:33: warning: format '%d' expects argument of type 'int', but argument 2 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=]
  457 |                 printf("\tread[%d] = %s\n", hi->data.i, hi->key);
      |                                ~^           ~~~~~~~~~~
      |                                 |                   |
      |                                 int                 uint64_t {aka long unsigned int}
      |                                %ld
srf_filter.c: In function 'add_readpair_region':
srf_filter.c:587:16: warning: pointer targets in assignment from 'unsigned char *' to 'char *' differ in signedness [-Wpointer-sign]
  587 |     c.data     = data;
      |                ^
srf_filter.c: In function 'srf_filter':
srf_filter.c:699:24: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  699 |                 while (chunk = ztr_read_chunk_hdr(in_srf->mf)) {
      |                        ^~~~~
srf_filter.c:788:23: warning: left-hand operand of comma expression has no effect [-Wunused-value]
  788 |                 stderr, "Error making trace header.\nExiting.\n";
      |                       ^
srf_filter.c:788:23: warning: statement with no effect [-Wunused-value]
srf_filter.c:794:73: warning: pointer targets in passing argument 3 of 'srf_construct_trace_hdr' differ in signedness [-Wpointer-sign]
  794 |             srf_construct_trace_hdr(&out_srf->th, in_srf->th.id_prefix, trace_hdr, trace_hdr_size);
      |                                                                         ^~~~~~~~~
      |                                                                         |
      |                                                                         char *
In file included from srf_filter.c:47:
../io_lib/srf.h:146:57: note: expected 'unsigned char *' but argument is of type 'char *'
  146 |                                          unsigned char *header,
      |                                          ~~~~~~~~~~~~~~~^~~~~~
srf_filter.c:894:24: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  894 |                 while (chunk = ztr_read_chunk_hdr(in_srf->mf)) {
      |                        ^~~~~
srf_filter.c:980:92: warning: pointer targets in passing argument 4 of 'srf_construct_trace_body' differ in signedness [-Wpointer-sign]
  980 |                 srf_construct_trace_body(&new_tb, name+strlen(in_srf->th.id_prefix), -1, mf->data, mf->size, old_tb.flags);
      |                                                                                          ~~^~~~~~
      |                                                                                            |
      |                                                                                            char *
../io_lib/srf.h:155:59: note: expected 'unsigned char *' but argument is of type 'char *'
  155 |                                            unsigned char *body,
      |                                            ~~~~~~~~~~~~~~~^~~~
srf_filter.c: In function 'read_filter_from_file':
srf_filter.c:186:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  186 |     fread(cFile, lFileLen, 1, input); /* Read the entire file into cFile */
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
srf_filter.c:246:49: warning: '%s' directive argument is null [-Wformat-overflow=]
  246 |                     fprintf(stderr, "Bad read \"%s\" in read filter \"%s\".\n", read, cThisLine);
      |                                                 ^~
srf_filter.c:235:51: warning: '%s' directive argument is null [-Wformat-overflow=]
  235 |                     fprintf(stderr, "Bad prefix \"%s\" in read filter \"%s\".\n", prefix, cThisLine);
      |                                                   ^~
srf_filter.c: In function 'get_read_filter':
srf_filter.c:348:41: warning: '%s' directive argument is null [-Wformat-overflow=]
  348 |             fprintf(stderr, "Bad read \"%s\" in read filter \"%s\".\n", read, filter_value);
      |                                         ^~
srf_filter.c:337:43: warning: '%s' directive argument is null [-Wformat-overflow=]
  337 |             fprintf(stderr, "Bad prefix \"%s\" in read filter \"%s\".\n", prefix, filter_value);
      |                                           ^~
srf_filter.c:319:46: warning: '%s' directive argument is null [-Wformat-overflow=]
  319 |             fprintf(stderr, "Bad file name \"%s\" in read filter \"%s\".\n", file_name, filter_value);
      |                                              ^~
srf_filter.c: In function 'srf_filter':
srf_filter.c:970:19: warning: 'output_trace_header' may be used uninitialized [-Wmaybe-uninitialized]
  970 |                 if( output_trace_header ) {
      |                   ^
srf_filter.c:613:9: note: 'output_trace_header' was declared here
  613 |     int output_trace_header;
      |         ^~~~~~~~~~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o index_tar  index_tar.o  -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o index_tar index_tar.o  -lm
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o extract_seq  extract_seq.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/extract_seq extract_seq.o  ../io_lib/.libs/libstaden-read.so -lm
creating extract_seq
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o extract_qual  extract_qual.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/extract_qual extract_qual.o  ../io_lib/.libs/libstaden-read.so -lm
creating extract_qual
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o makeSCF  makeSCF.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/makeSCF makeSCF.o  ../io_lib/.libs/libstaden-read.so -lm
creating makeSCF
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o convert_trace  convert_trace.o ../io_lib/libstaden-read.la -lm 
mkdir .libs
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/convert_trace convert_trace.o  ../io_lib/.libs/libstaden-read.so -lm
creating convert_trace
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make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o extract_fastq  extract_fastq.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/extract_fastq extract_fastq.o  ../io_lib/.libs/libstaden-read.so -lm
creating extract_fastq
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/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o scf_dump  scf_dump.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/scf_dump scf_dump.o  ../io_lib/.libs/libstaden-read.so -lm
creating scf_dump
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/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o scf_info  scf_info.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/scf_info scf_info.o  ../io_lib/.libs/libstaden-read.so -lm
creating scf_info
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/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o scf_update  scf_update.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/scf_update scf_update.o  ../io_lib/.libs/libstaden-read.so -lm
creating scf_update
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/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o get_comment  get_comment.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/get_comment get_comment.o  ../io_lib/.libs/libstaden-read.so -lm
creating get_comment
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/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o hash_extract  hash_extract.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/hash_extract hash_extract.o  ../io_lib/.libs/libstaden-read.so -lm
creating hash_extract
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/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o hash_list  hash_list.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/hash_list hash_list.o  ../io_lib/.libs/libstaden-read.so -lm
creating hash_list
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/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o trace_dump  trace_dump.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/trace_dump trace_dump.o  ../io_lib/.libs/libstaden-read.so -lm
creating trace_dump
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/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o hash_tar  hash_tar.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/hash_tar hash_tar.o  ../io_lib/.libs/libstaden-read.so -lm
creating hash_tar
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/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o append_sff  append_sff.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/append_sff append_sff.o  ../io_lib/.libs/libstaden-read.so -lm
creating append_sff
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/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o hash_sff  hash_sff.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/hash_sff hash_sff.o  ../io_lib/.libs/libstaden-read.so -lm
creating hash_sff
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/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o ztr_dump  ztr_dump.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/ztr_dump ztr_dump.o  ../io_lib/.libs/libstaden-read.so -lm
creating ztr_dump
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o srf_index_hash  srf_index_hash.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/srf_index_hash srf_index_hash.o  ../io_lib/.libs/libstaden-read.so -lm
creating srf_index_hash
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o srf_extract_linear  srf_extract_linear.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/srf_extract_linear srf_extract_linear.o  ../io_lib/.libs/libstaden-read.so -lm
creating srf_extract_linear
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o srf_extract_hash  srf_extract_hash.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/srf_extract_hash srf_extract_hash.o  ../io_lib/.libs/libstaden-read.so -lm
creating srf_extract_hash
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o srf2fasta  srf2fasta.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/srf2fasta srf2fasta.o  ../io_lib/.libs/libstaden-read.so -lm
creating srf2fasta
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o srf_dump_all  srf_dump_all.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/srf_dump_all srf_dump_all.o  ../io_lib/.libs/libstaden-read.so -lm
creating srf_dump_all
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o srf2fastq  srf2fastq.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/srf2fastq srf2fastq.o  ../io_lib/.libs/libstaden-read.so -lm
creating srf2fastq
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o srf_filter  srf_filter.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/srf_filter srf_filter.o  ../io_lib/.libs/libstaden-read.so -lm
creating srf_filter
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o srf_list  srf_list.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/srf_list srf_list.o  ../io_lib/.libs/libstaden-read.so -lm
creating srf_list
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o srf_info  srf_info.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/srf_info srf_info.o  ../io_lib/.libs/libstaden-read.so -lm
creating srf_info
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
Making all in tests
make[2]: Nothing to be done for 'all'.
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.yqReQZ
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64
++ dirname /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd io_lib-1.12.4
+ /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64 'INSTALL=/usr/bin/install -p'
Making install in io_lib
make[1]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
test -z "/usr/lib64" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/lib64"
 /bin/sh ../libtool --mode=install /usr/bin/install -p  'libstaden-read.la' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/lib64/libstaden-read.la'
/usr/bin/install -p .libs/libstaden-read.so.1.1.2 /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/lib64/libstaden-read.so.1.1.2
(cd /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/lib64 && { ln -s -f libstaden-read.so.1.1.2 libstaden-read.so.1 || { rm -f libstaden-read.so.1 && ln -s libstaden-read.so.1.1.2 libstaden-read.so.1; }; })
(cd /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/lib64 && { ln -s -f libstaden-read.so.1.1.2 libstaden-read.so || { rm -f libstaden-read.so && ln -s libstaden-read.so.1.1.2 libstaden-read.so; }; })
/usr/bin/install -p .libs/libstaden-read.lai /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/lib64/libstaden-read.la
libtool: install: warning: remember to run `libtool --finish /usr/lib64'
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
make[1]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
Making install in progs
make[1]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
test -z "/usr/bin" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin"
  /bin/sh ../libtool --mode=install /usr/bin/install -p 'convert_trace' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/convert_trace'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -p .libs/convert_trace /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/convert_trace
  /bin/sh ../libtool --mode=install /usr/bin/install -p 'makeSCF' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/makeSCF'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -p .libs/makeSCF /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/makeSCF
  /bin/sh ../libtool --mode=install /usr/bin/install -p 'extract_seq' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/extract_seq'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -p .libs/extract_seq /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/extract_seq
  /bin/sh ../libtool --mode=install /usr/bin/install -p 'extract_qual' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/extract_qual'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -p .libs/extract_qual /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/extract_qual
  /bin/sh ../libtool --mode=install /usr/bin/install -p 'extract_fastq' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/extract_fastq'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -p .libs/extract_fastq /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/extract_fastq
  /bin/sh ../libtool --mode=install /usr/bin/install -p 'index_tar' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/index_tar'
/usr/bin/install -p index_tar /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/index_tar
  /bin/sh ../libtool --mode=install /usr/bin/install -p 'scf_dump' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/scf_dump'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -p .libs/scf_dump /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/scf_dump
  /bin/sh ../libtool --mode=install /usr/bin/install -p 'scf_info' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/scf_info'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -p .libs/scf_info /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/scf_info
  /bin/sh ../libtool --mode=install /usr/bin/install -p 'scf_update' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/scf_update'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -p .libs/scf_update /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/scf_update
  /bin/sh ../libtool --mode=install /usr/bin/install -p 'get_comment' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/get_comment'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -p .libs/get_comment /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/get_comment
  /bin/sh ../libtool --mode=install /usr/bin/install -p 'hash_tar' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/hash_tar'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -p .libs/hash_tar /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/hash_tar
  /bin/sh ../libtool --mode=install /usr/bin/install -p 'hash_extract' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/hash_extract'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -p .libs/hash_extract /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/hash_extract
  /bin/sh ../libtool --mode=install /usr/bin/install -p 'hash_list' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/hash_list'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -p .libs/hash_list /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/hash_list
  /bin/sh ../libtool --mode=install /usr/bin/install -p 'trace_dump' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/trace_dump'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -p .libs/trace_dump /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/trace_dump
  /bin/sh ../libtool --mode=install /usr/bin/install -p 'hash_sff' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/hash_sff'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -p .libs/hash_sff /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/hash_sff
  /bin/sh ../libtool --mode=install /usr/bin/install -p 'append_sff' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/append_sff'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -p .libs/append_sff /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/append_sff
  /bin/sh ../libtool --mode=install /usr/bin/install -p 'ztr_dump' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/ztr_dump'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -p .libs/ztr_dump /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/ztr_dump
  /bin/sh ../libtool --mode=install /usr/bin/install -p 'srf_dump_all' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/srf_dump_all'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -p .libs/srf_dump_all /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/srf_dump_all
  /bin/sh ../libtool --mode=install /usr/bin/install -p 'srf_index_hash' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/srf_index_hash'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -p .libs/srf_index_hash /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/srf_index_hash
  /bin/sh ../libtool --mode=install /usr/bin/install -p 'srf_extract_linear' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/srf_extract_linear'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -p .libs/srf_extract_linear /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/srf_extract_linear
  /bin/sh ../libtool --mode=install /usr/bin/install -p 'srf_extract_hash' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/srf_extract_hash'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -p .libs/srf_extract_hash /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/srf_extract_hash
  /bin/sh ../libtool --mode=install /usr/bin/install -p 'srf2fastq' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/srf2fastq'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -p .libs/srf2fastq /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/srf2fastq
  /bin/sh ../libtool --mode=install /usr/bin/install -p 'srf2fasta' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/srf2fasta'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -p .libs/srf2fasta /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/srf2fasta
  /bin/sh ../libtool --mode=install /usr/bin/install -p 'srf_filter' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/srf_filter'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -p .libs/srf_filter /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/srf_filter
  /bin/sh ../libtool --mode=install /usr/bin/install -p 'srf_info' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/srf_info'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -p .libs/srf_info /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/srf_info
  /bin/sh ../libtool --mode=install /usr/bin/install -p 'srf_list' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/srf_list'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -p .libs/srf_list /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/srf_list
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
make[1]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
Making install in tests
make[1]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/tests'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/tests'
make[2]: Nothing to be done for 'install-exec-am'.
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/tests'
make[1]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/tests'
make[1]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4'
test -z "/usr/bin" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin"
 /usr/bin/install -p 'staden-io_lib-config' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/staden-io_lib-config'
test -z "/usr/share/man/man1" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/share/man/man1"
 /usr/bin/install -p -m 644 './man/man1/srf_index_hash.1' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/share/man/man1/srf_index_hash.1'
 /usr/bin/install -p -m 644 './man/man1/srf_info.1' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/share/man/man1/srf_info.1'
 /usr/bin/install -p -m 644 './man/man1/srf_list.1' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/share/man/man1/srf_list.1'
 /usr/bin/install -p -m 644 './man/man1/srf2fasta.1' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/share/man/man1/srf2fasta.1'
 /usr/bin/install -p -m 644 './man/man1/srf2fastq.1' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/share/man/man1/srf2fastq.1'
test -z "/usr/share/man/man3" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/share/man/man3"
 /usr/bin/install -p -m 644 './man/man3/read_scf_header.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/share/man/man3/read_scf_header.3'
 /usr/bin/install -p -m 644 './man/man3/read_allocate.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/share/man/man3/read_allocate.3'
 /usr/bin/install -p -m 644 './man/man3/ExperimentFile.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/share/man/man3/ExperimentFile.3'
 /usr/bin/install -p -m 644 './man/man3/write_reading.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/share/man/man3/write_reading.3'
 /usr/bin/install -p -m 644 './man/man3/write_scf.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/share/man/man3/write_scf.3'
 /usr/bin/install -p -m 644 './man/man3/read_deallocate.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/share/man/man3/read_deallocate.3'
 /usr/bin/install -p -m 644 './man/man3/fwrite_reading.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/share/man/man3/fwrite_reading.3'
 /usr/bin/install -p -m 644 './man/man3/read2scf.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/share/man/man3/read2scf.3'
 /usr/bin/install -p -m 644 './man/man3/scf2read.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/share/man/man3/scf2read.3'
 /usr/bin/install -p -m 644 './man/man3/fwrite_scf.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/share/man/man3/fwrite_scf.3'
 /usr/bin/install -p -m 644 './man/man3/write_scf_header.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/share/man/man3/write_scf_header.3'
 /usr/bin/install -p -m 644 './man/man3/read_reading.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/share/man/man3/read_reading.3'
 /usr/bin/install -p -m 644 './man/man3/read_scf.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/share/man/man3/read_scf.3'
 /usr/bin/install -p -m 644 './man/man3/exp2read.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/share/man/man3/exp2read.3'
 /usr/bin/install -p -m 644 './man/man3/fread_reading.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/share/man/man3/fread_reading.3'
 /usr/bin/install -p -m 644 './man/man3/read2exp.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/share/man/man3/read2exp.3'
 /usr/bin/install -p -m 644 './man/man3/fread_scf.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/share/man/man3/fread_scf.3'
test -z "/usr/share/man/man4" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/share/man/man4"
 /usr/bin/install -p -m 644 './man/man4/Read.4' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/share/man/man4/Read.4'
test -z "/usr/include/io_lib" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/include/io_lib"
 /usr/bin/install -p -m 644 'io_lib/Read.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/include/io_lib/Read.h'
 /usr/bin/install -p -m 644 'io_lib/scf_extras.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/include/io_lib/scf_extras.h'
 /usr/bin/install -p -m 644 'io_lib/translate.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/include/io_lib/translate.h'
 /usr/bin/install -p -m 644 'io_lib/abi.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/include/io_lib/abi.h'
 /usr/bin/install -p -m 644 'io_lib/fpoint.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/include/io_lib/fpoint.h'
 /usr/bin/install -p -m 644 'io_lib/seqIOABI.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/include/io_lib/seqIOABI.h'
 /usr/bin/install -p -m 644 'io_lib/alf.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/include/io_lib/alf.h'
 /usr/bin/install -p -m 644 'io_lib/seqIOCTF.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/include/io_lib/seqIOCTF.h'
 /usr/bin/install -p -m 644 'io_lib/expFileIO.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/include/io_lib/expFileIO.h'
 /usr/bin/install -p -m 644 'io_lib/plain.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/include/io_lib/plain.h'
 /usr/bin/install -p -m 644 'io_lib/scf.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/include/io_lib/scf.h'
 /usr/bin/install -p -m 644 'io_lib/sff.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/include/io_lib/sff.h'
 /usr/bin/install -p -m 644 'io_lib/array.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/include/io_lib/array.h'
 /usr/bin/install -p -m 644 'io_lib/compress.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/include/io_lib/compress.h'
 /usr/bin/install -p -m 644 'io_lib/error.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/include/io_lib/error.h'
 /usr/bin/install -p -m 644 'io_lib/mach-io.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/include/io_lib/mach-io.h'
 /usr/bin/install -p -m 644 'io_lib/misc.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/include/io_lib/misc.h'
 /usr/bin/install -p -m 644 'io_lib/open_trace_file.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/include/io_lib/open_trace_file.h'
 /usr/bin/install -p -m 644 'io_lib/tar_format.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/include/io_lib/tar_format.h'
 /usr/bin/install -p -m 644 'io_lib/traceType.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/include/io_lib/traceType.h'
 /usr/bin/install -p -m 644 'io_lib/xalloc.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/include/io_lib/xalloc.h'
 /usr/bin/install -p -m 644 'io_lib/mFILE.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/include/io_lib/mFILE.h'
 /usr/bin/install -p -m 644 'io_lib/stdio_hack.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/include/io_lib/stdio_hack.h'
 /usr/bin/install -p -m 644 'io_lib/vlen.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/include/io_lib/vlen.h'
 /usr/bin/install -p -m 644 'io_lib/hash_table.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/include/io_lib/hash_table.h'
 /usr/bin/install -p -m 644 'io_lib/jenkins_lookup3.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/include/io_lib/jenkins_lookup3.h'
 /usr/bin/install -p -m 644 'io_lib/os.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/include/io_lib/os.h'
 /usr/bin/install -p -m 644 'io_lib/compression.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/include/io_lib/compression.h'
 /usr/bin/install -p -m 644 'io_lib/ztr.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/include/io_lib/ztr.h'
 /usr/bin/install -p -m 644 'io_lib/deflate_interlaced.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/include/io_lib/deflate_interlaced.h'
 /usr/bin/install -p -m 644 'io_lib/srf.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/include/io_lib/srf.h'
 /usr/bin/install -p -m 644 'io_lib/pooled_alloc.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/include/io_lib/pooled_alloc.h'
 /usr/bin/install -p -m 644 'io_lib_config.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/include/io_lib/io_lib_config.h'
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4'
make[1]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4'
+ find /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64 -name '*.la' -delete
+ /usr/bin/find-debuginfo -j8 --strict-build-id -m -i --build-id-seed 1.12.4-24.fc37 --unique-debug-suffix -1.12.4-24.fc37.riscv64 --unique-debug-src-base staden-io_lib-1.12.4-24.fc37.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/io_lib-1.12.4
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/append_sff
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/extract_qual
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/extract_seq
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/extract_fastq
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/convert_trace
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/get_comment
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/hash_list
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/hash_extract
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/index_tar
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/hash_sff
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/hash_tar
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/makeSCF
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/scf_dump
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/scf_update
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/scf_info
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/srf2fasta
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/srf2fastq
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/srf_dump_all
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/srf_extract_hash
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/srf_extract_linear
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/srf_index_hash
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/srf_info
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/srf_filter
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/srf_list
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/trace_dump
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/bin/ztr_dump
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/lib64/libstaden-read.so.1.1.2
original debug info size: 4056kB, size after compression: 3932kB
/usr/bin/sepdebugcrcfix: Updated 27 CRC32s, 0 CRC32s did match.
1828 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/bin/staden-io_lib-config from /bin/sh to #!/usr/bin/sh
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0
+ /usr/lib/rpm/redhat/brp-python-hardlink
Processing files: staden-io_lib-1.12.4-24.fc37.riscv64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.DQ4tYs
+ umask 022
+ cd /builddir/build/BUILD
+ cd io_lib-1.12.4
+ DOCDIR=/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/share/doc/staden-io_lib
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/share/doc/staden-io_lib
+ cp -pr README /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/share/doc/staden-io_lib
+ cp -pr COPYRIGHT /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/share/doc/staden-io_lib
+ cp -pr CHANGES /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/share/doc/staden-io_lib
+ cp -pr docs/ /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64/usr/share/doc/staden-io_lib
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: libstaden-read.so.1()(64bit) staden-io_lib = 1.12.4-24.fc37 staden-io_lib(riscv-64) = 1.12.4-24.fc37
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libcurl.so.4()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libstaden-read.so.1()(64bit) libz.so.1()(64bit) rtld(GNU_HASH)
Processing files: staden-io_lib-devel-1.12.4-24.fc37.riscv64
Provides: staden-io_lib-devel = 1.12.4-24.fc37 staden-io_lib-devel(riscv-64) = 1.12.4-24.fc37
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/sh libstaden-read.so.1()(64bit)
Processing files: staden-io_lib-debugsource-1.12.4-24.fc37.riscv64
Provides: staden-io_lib-debugsource = 1.12.4-24.fc37 staden-io_lib-debugsource(riscv-64) = 1.12.4-24.fc37
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: staden-io_lib-debuginfo-1.12.4-24.fc37.riscv64
Provides: debuginfo(build-id) = 0b3467913352d4fef76373f68374207937a3d2fd debuginfo(build-id) = 0e7abf696f767b8cfa9fffae9ae4e14bcb16fa1d debuginfo(build-id) = 1557860ac600982a1b2dee9447d4a3619aae06d8 debuginfo(build-id) = 179e938ccb4c619b0786af55b1633961ca69929b debuginfo(build-id) = 1dfe1bda40b079c42f3d08b7df126e4222a8f0a1 debuginfo(build-id) = 1fe4f1390e7011d03ddff063c161537e87e6a975 debuginfo(build-id) = 206c339ac122eeb9284bc1ea0fc118228cc838a8 debuginfo(build-id) = 29bcfebd913cc4f34ed75febcad3c9f809a84258 debuginfo(build-id) = 31e60a8dc0d738947842cf102a2bbcd01943c542 debuginfo(build-id) = 3736812a7e55d9ac89800c352ec60e5317515a1d debuginfo(build-id) = 4e8f97f657e53bf35ed2476f389b4781209d1491 debuginfo(build-id) = 6162ef6c6b6333953aebd94db7e4e70e96db8fe4 debuginfo(build-id) = 6215f98b48617052bb22583d696ff16c1a153969 debuginfo(build-id) = 7d2dd189aca669eccf2f3b1c1342171ba28caad8 debuginfo(build-id) = 8a9b9d3f7e051d5822a0957fe44060c5921d84dc debuginfo(build-id) = 927dc5e14c2d9601fa7af234070d284a2f6d2b47 debuginfo(build-id) = a016ac321177d30d96b6b9e450a8639581420e03 debuginfo(build-id) = aa92b26e4c41fcb335299af91fcd36ab59c92919 debuginfo(build-id) = ab99042d7445d8397ed1f1f738100642193c1940 debuginfo(build-id) = affb0f843a81c5c461c89937358a64f9d0d7f97a debuginfo(build-id) = bded1a912d0a98a8681f67dc5fe9dacb9a4bcd90 debuginfo(build-id) = d22bf667505b0bacf920af03e7c3c5288458c4a2 debuginfo(build-id) = db16a5122fada428adf383cf5397277deb9cf887 debuginfo(build-id) = e133f66dc95aeae678efb78cc20e2bd9097012dd debuginfo(build-id) = e60023215f704ebc1ab2766b631ec468b7564a79 debuginfo(build-id) = e62f0a2be155ae068fcd592c0bdaa0c7f341ced8 debuginfo(build-id) = e87005fa27e3895d57366605d2dc774a0d2c77b8 libstaden-read.so.1.1.2-1.12.4-24.fc37.riscv64.debug()(64bit) staden-io_lib-debuginfo = 1.12.4-24.fc37 staden-io_lib-debuginfo(riscv-64) = 1.12.4-24.fc37
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: staden-io_lib-debugsource(riscv-64) = 1.12.4-24.fc37
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64
Wrote: /builddir/build/RPMS/staden-io_lib-devel-1.12.4-24.fc37.riscv64.rpm
Wrote: /builddir/build/RPMS/staden-io_lib-1.12.4-24.fc37.riscv64.rpm
Wrote: /builddir/build/RPMS/staden-io_lib-debugsource-1.12.4-24.fc37.riscv64.rpm
Wrote: /builddir/build/RPMS/staden-io_lib-debuginfo-1.12.4-24.fc37.riscv64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.ThIBXN
+ umask 022
+ cd /builddir/build/BUILD
+ cd io_lib-1.12.4
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc37.riscv64
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.c9nvMY
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf io_lib-1.12.4 io_lib-1.12.4.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
Child return code was: 0